LOC110514303 (prdm1)


Basic Information

Item Value
gene id LOC110514303
gene name prdm1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22903729 ~ 22919447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593764.2
AAGGCACTCActagaacagacacacacacgctcacacacagcaCTCGCACTCTGGAGTAGCGCTTGGattggagggggagagggtgaactgcacctgtcccacacacacacacaaataaaacacTCACCCAGGGGAGAGATCATTCGGCCCTATGTGTGGCTGGGACCAAAGCTTCTCGGCTACCTCTCATAGCTCGGCCATGTTGACTACTGAGGGGGCCCACACTGTAGAGCACGACAACGTCAAGATGGACACCGAACCCCATAGGGACACGGAAACCCAGATGGACACGAGATCCAAAATGGCCACCGACACAGACTCTAAGATGGAGGAGGCGGACATGATGAAGTGGACGGAGGTGGAGTTTGAGGAGAAGTGTACCTACATCGTCAAGGATACTCCGCGGGAGGCAGGGACAGAGAGCAAGGGGTTAACGAGAGCAGAGGCCTCACTGCCTCGTAACCTGGCCTTCAAACAACTAGCTGATTCCAAAGAGgTGATTGGAGTGGCCAGCAGAGAGTACATCCCCAAAGGAACACGCTTCGGCCCCCTGGTGGGTCAGAGCTACACTGCAGACAGCGTCCCCAAAGACGCCAACAGGAAGTACTTCTGGAGGATCTACTCGGAGGGCGACTTCCACCACTTTGTGGACGGCCTGGACGAGGAGCGGTCTAACTGGATGCGCTACGTCAACCCGATCCACTCGGCGGGGGAGCAAAACCTGGCGGCGTGCCAGAATGGCACGAACATCTACTTCTACACGGTGAGGGCCATCCCCCCTGGCACCGAGCTGCTGGTGTGGTACTGCCCAGAGTTCGCTCTCCGCCTCCACTACCTGCCTTCTGAAGAGCTCATGATGCAGAAACTGAaGCAGTCTCTGCTGGAAGCCAAGCAGCAGGCCAGTGAGGAGCATGTTAGCAGCAGCAGCGCCCCAGTCAAGATAGAACACAGTGTCTCCTCCATCCTCGGGGGCCCCACCACCTCTAGCAAGAAGGAGCCCAGCCGGCCACTGGCCACGCGACCCCGCTGTGCCCTCTACCCCCCATTCCGCCCCCACCCTCATCTAACGGAAGAGTTCCTGAGCCTTAAGACCAGCCCGGTACAGTTTTGTTACACAGTAATCAGATCACCAGGCAACCAGTCGTCGGCGACCCCGAGTCCGTCGGCGCGGAGCAGTCCGGAGAGTAGCCCCGATGGTAGCCCCGCAGCTCCCCAACCCACACACCAATCCTCCTCTTTTTACTCCCGAGGTTTGGGTCCCTACCCAGGCTATTCTCCACCAGCCGCCCCCCTTTCCTCGCCCTTCTACCCTCCCGGCCCCCACTATTCCCGCTACATGCTACCCCACCACTACCCACTACCTGGGGGTGGGGTGCCCGCTGTCGGGGGAATGTTTCCAAGAATGTACCCTCTCTTCAGCAGCCTGCTGCCCCCCAACATGCCCCTGCTGCCTGGGGAGGCGGGGAGCAGGTTCTTACTACCTAACTCCTCCCACCCCTCATTCTCCACCCACCGGGACTTCCTCCTCTCCGCCACCACCAGTGCCTTCTCAGCCGCCACCACCCTCGGGGACAAAGCCGGCCCCCACTACCCCCATCACCCCTACTCTGGCAATGATCATCCTCACCCACACGGGCACCCCCACGCCCCCACCAGCGGCTCACCTACAGCGGGCACGGCGGCCCCTAGCGAGCACATGCCCACCAAGCCTACCTCAGCCCTACTGGGCAGTGCCAGCGGCCGGCAGGAGGAGGCCATGAACCTGAGCAAgatgaagcgtggtggtggctcTACAGGCTACAAGACCCTGCCTTACCCACTCAAGAAGCAGAACGGCAAAATCAAGTACGAGTGTAACGTCTGCAGCAAGACCTTCGGCCAGCTCTCTAACCTCAAGGTGCACTTGCGTGTCCACAGCGGTGAGCGGCCCTTCAAGTGTTCGACCTGCAGTAAAGGCTTCACCCAGCTGGCCCACCTGCAGAAACACTTCCTGgtgcacactggagagaagccccATGAGTGCTCGGTGTGCCATAAGCGCTTCAGCAGCACCAGCAACCTAAAGACCCACCTGCGCCTCCACTCGGGTGAGAAGCCCTACTTGTGCAAGCTCTGCCCTGCCAAGTTCACTCAGTTTGTCCACCTGAAGCTGCACAAGCGCCTTCACTCCCGCGAGCGGCCACACAAGTGCCCCCACTGCCACCGCCACTACATTCACCTGTGCAGCCTGCAGCTACACCTGAAGGGCTACTGTCTGGCTGCCGTCACCTCCTCAGGTGGCCCCACCCCCAGCCCCTCCACCCAGGAAGAGCTCCAGCGCATCAATGAGGAGATTGAGCGCTTCGACATGAGCGACCACGCTGAGAGGCTGGACCAGCTCCAGGGAGGGGTTGAGGTTGAGGCTGTCCTGGAGAAGCAGGTCCTGGGGATGCTGTGGAGGGAGATGGACCTCAAGACCTCCGGCTACCACCACCACAAGGGCGGCGCCAGTGAGCTCCAGTCTACAGGTTACGGCCTCTACAATTCAGTCAATGAGACGTCGGTTATCAAACTGCGCCGAAGCAGTCCGCTTCTTCCTTCCAACGTCACGATCAAGCAGGAGTCTGAGGAACAGGCTTGAGCTCACCGTTTGAAGGACGTTGAGTCAGACTGTGGCTCTGAGAACTTGGTTAGCAGGAGCAACGAgtgtaaatatattttgatggtTGTAGCGACTGGGGTTTTCAAACTTTCAGGGACTTATGTACTCAGGGCTCCAAGAGACACTGTCCCCAGATTACTTAACTGTTCCACTGTGTCCTACACTTAAGACAGGACAATCATCCACCcatatcattgttattattactgTTTATTTTCAATTTTATTTTTGTTGAATTTATTATAACCTCCTTAATTTATTATGCAATTATTCTGTCTTCAAAAAGCAATATGTGGAAGTGATGTTTACAATGACCAGGTAATTCATTGTAATTTACTGTTTGTTTTTCTGATTTTGATTTCACTCTGGGGCCATTTCTTTGTAGatactttctctctctgcctgtatccATCCTGTGTGACCTGTTGAGAAGCAGGGGtgcctacttttttttttttttttttaaatatttaaacaATATAGCAGGTTAAAAAGGGTCAAAGGTCGCAACTTTGTTTTGCCAAAGGTGAACACAAACTTTTGATTAGAAAGAAAAGGCATTGCTTGACCTTCTGACCCTTCCAGCAAGCTTCTCTATGTCCACACTCATCCTGAGTTCTGCAAAAATTGCATTTTTTGTTTTATGTATTTTCAACAACGGTTACCTCAGTGTGTGTATGATTGTATGCCtgtgagtatgtgtgtctgtacgtTCAGAGGGAAGCTGAAGGAGAGTGTGTTTTCTATTTATTGCTTTTGCTACTTGAAGAAGAAACCAAAATGAACTGGAGTGCCTCTCCACATGATCCAAAGAGCAGGAAAGTCTGCTCAATATGTAGCATATAAAGACTGCGAGTCCAGGAATCCTTCCCCCCCCAACAGTCCAAGGGAACTTCAATACACTGTTAATGGCAAAAGGAGACACTGTAAAGTTTACTTGGCTTTAGTTTCAAACACACCAAAAAGAGACTTATATTATTGAAAAGAAGACCAAGAGAATACTGTTTGTCTGTGATGAAGTGTTAGCTCTTTAGCTGTGGTTTTGTTTGAGAAAAATGTATCCCCCTTCTCATTTTTAAATGGCACAGACCAAAGCACCTTGGCCTTCTTATGCACTGGCCCCTTCCCTTTATGACTTAAGTGCCGGTGCTTGCTCCTCCCACTATTCAATATGATTGGACTGTTATAATGGCTTTAAGACGACATATGGTTTGTCTCCATAGCAACTGTGAGCCCAGGCCGGTGACCTGGAAGCAGTTGCACATCAGCCCCCATCCCCtcgcttttttctctctccctccaaccctgaAGTATGACCAAAGCATCCCCTTTCATCTTTAGCCCTAGAGGAGAAAAAAATACTGTCTCTGTTTACATACTCGTTTACATTGTTATTTATGTGCAAAATGTAAATTTATGATAAATGTCCACAGTTCTAATCTGA
>XM_021593770.2
GGTAGGCTACTTTGTATGGAAACTGTAGACTACAGATTCACCTCGACAATTTCATAGTATACACGCACTACAAAGAGAGACGATCGGACCTAGGCCAGCAGCGCCTGAGTTTGGAAATTGGGATAAGGATATCTTCCAGCGCTCCGCGACAGGCGCGTCATAACGCGGACAGGCTACCTCTCATAGCTCGGCCATGTTGACTACTGAGGGGGCCCACACTGTAGAGCACGACAACGTCAAGATGGACACCGAACCCCATAGGGACACGGAAACCCAGATGGACACGAGATCCAAAATGGCCACCGACACAGACTCTAAGATGGAGGAGGCGGACATGATGAAGTGGACGGAGGTGGAGTTTGAGGAGAAGTGTACCTACATCGTCAAGGATACTCCGCGGGAGGCAGGGACAGAGAGCAAGGGGTTAACGAGAGCAGAGGCCTCACTGCCTCGTAACCTGGCCTTCAAACAACTAGCTGATTCCAAAGAGgTGATTGGAGTGGCCAGCAGAGAGTACATCCCCAAAGGAACACGCTTCGGCCCCCTGGTGGGTCAGAGCTACACTGCAGACAGCGTCCCCAAAGACGCCAACAGGAAGTACTTCTGGAGGATCTACTCGGAGGGCGACTTCCACCACTTTGTGGACGGCCTGGACGAGGAGCGGTCTAACTGGATGCGCTACGTCAACCCGATCCACTCGGCGGGGGAGCAAAACCTGGCGGCGTGCCAGAATGGCACGAACATCTACTTCTACACGGTGAGGGCCATCCCCCCTGGCACCGAGCTGCTGGTGTGGTACTGCCCAGAGTTCGCTCTCCGCCTCCACTACCTGCCTTCTGAAGAGCTCATGATGCAGAAACTGAaGCAGTCTCTGCTGGAAGCCAAGCAGCAGGCCAGTGAGGAGCATGTTAGCAGCAGCAGCGCCCCAGTCAAGATAGAACACAGTGTCTCCTCCATCCTCGGGGGCCCCACCACCTCTAGCAAGAAGGAGCCCAGCCGGCCACTGGCCACGCGACCCCGCTGTGCCCTCTACCCCCCATTCCGCCCCCACCCTCATCTAACGGAAGAGTTCCTGAGCCTTAAGACCAGCCCGGTACAGTTTTGTTACACAGTAATCAGATCACCAGGCAACCAGTCGTCGGCGACCCCGAGTCCGTCGGCGCGGAGCAGTCCGGAGAGTAGCCCCGATGGTAGCCCCGCAGCTCCCCAACCCACACACCAATCCTCCTCTTTTTACTCCCGAGGTTTGGGTCCCTACCCAGGCTATTCTCCACCAGCCGCCCCCCTTTCCTCGCCCTTCTACCCTCCCGGCCCCCACTATTCCCGCTACATGCTACCCCACCACTACCCACTACCTGGGGGTGGGGTGCCCGCTGTCGGGGGAATGTTTCCAAGAATGTACCCTCTCTTCAGCAGCCTGCTGCCCCCCAACATGCCCCTGCTGCCTGGGGAGGCGGGGAGCAGGTTCTTACTACCTAACTCCTCCCACCCCTCATTCTCCACCCACCGGGACTTCCTCCTCTCCGCCACCACCAGTGCCTTCTCAGCCGCCACCACCCTCGGGGACAAAGCCGGCCCCCACTACCCCCATCACCCCTACTCTGGCAATGATCATCCTCACCCACACGGGCACCCCCACGCCCCCACCAGCGGCTCACCTACAGCGGGCACGGCGGCCCCTAGCGAGCACATGCCCACCAAGCCTACCTCAGCCCTACTGGGCAGTGCCAGCGGCCGGCAGGAGGAGGCCATGAACCTGAGCAAgatgaagcgtggtggtggctcTACAGGCTACAAGACCCTGCCTTACCCACTCAAGAAGCAGAACGGCAAAATCAAGTACGAGTGTAACGTCTGCAGCAAGACCTTCGGCCAGCTCTCTAACCTCAAGGTGCACTTGCGTGTCCACAGCGGTGAGCGGCCCTTCAAGTGTTCGACCTGCAGTAAAGGCTTCACCCAGCTGGCCCACCTGCAGAAACACTTCCTGgtgcacactggagagaagccccATGAGTGCTCGGTGTGCCATAAGCGCTTCAGCAGCACCAGCAACCTAAAGACCCACCTGCGCCTCCACTCGGGTGAGAAGCCCTACTTGTGCAAGCTCTGCCCTGCCAAGTTCACTCAGTTTGTCCACCTGAAGCTGCACAAGCGCCTTCACTCCCGCGAGCGGCCACACAAGTGCCCCCACTGCCACCGCCACTACATTCACCTGTGCAGCCTGCAGCTACACCTGAAGGGCTACTGTCTGGCTGCCGTCACCTCCTCAGGTGGCCCCACCCCCAGCCCCTCCACCCAGGAAGAGCTCCAGCGCATCAATGAGGAGATTGAGCGCTTCGACATGAGCGACCACGCTGAGAGGCTGGACCAGCTCCAGGGAGGGGTTGAGGTTGAGGCTGTCCTGGAGAAGCAGGTCCTGGGGATGCTGTGGAGGGAGATGGACCTCAAGACCTCCGGCTACCACCACCACAAGGGCGGCGCCAGTGAGCTCCAGTCTACAGGTTACGGCCTCTACAATTCAGTCAATGAGACGTCGGTTATCAAACTGCGCCGAAGCAGTCCGCTTCTTCCTTCCAACGTCACGATCAAGCAGGAGTCTGAGGAACAGGCTTGAGCTCACCGTTTGAAGGACGTTGAGTCAGACTGTGGCTCTGAGAACTTGGTTAGCAGGAGCAACGAgtgtaaatatattttgatggtTGTAGCGACTGGGGTTTTCAAACTTTCAGGGACTTATGTACTCAGGGCTCCAAGAGACACTGTCCCCAGATTACTTAACTGTTCCACTGTGTCCTACACTTAAGACAGGACAATCATCCACCcatatcattgttattattactgTTTATTTTCAATTTTATTTTTGTTGAATTTATTATAACCTCCTTAATTTATTATGCAATTATTCTGTCTTCAAAAAGCAATATGTGGAAGTGATGTTTACAATGACCAGGTAATTCATTGTAATTTACTGTTTGTTTTTCTGATTTTGATTTCACTCTGGGGCCATTTCTTTGTAGatactttctctctctgcctgtatccATCCTGTGTGACCTGTTGAGAAGCAGGGGtgcctacttttttttttttttttttaaatatttaaacaATATAGCAGGTTAAAAAGGGTCAAAGGTCGCAACTTTGTTTTGCCAAAGGTGAACACAAACTTTTGATTAGAAAGAAAAGGCATTGCTTGACCTTCTGACCCTTCCAGCAAGCTTCTCTATGTCCACACTCATCCTGAGTTCTGCAAAAATTGCATTTTTTGTTTTATGTATTTTCAACAACGGTTACCTCAGTGTGTGTATGATTGTATGCCtgtgagtatgtgtgtctgtacgtTCAGAGGGAAGCTGAAGGAGAGTGTGTTTTCTATTTATTGCTTTTGCTACTTGAAGAAGAAACCAAAATGAACTGGAGTGCCTCTCCACATGATCCAAAGAGCAGGAAAGTCTGCTCAATATGTAGCATATAAAGACTGCGAGTCCAGGAATCCTTCCCCCCCCAACAGTCCAAGGGAACTTCAATACACTGTTAATGGCAAAAGGAGACACTGTAAAGTTTACTTGGCTTTAGTTTCAAACACACCAAAAAGAGACTTATATTATTGAAAAGAAGACCAAGAGAATACTGTTTGTCTGTGATGAAGTGTTAGCTCTTTAGCTGTGGTTTTGTTTGAGAAAAATGTATCCCCCTTCTCATTTTTAAATGGCACAGACCAAAGCACCTTGGCCTTCTTATGCACTGGCCCCTTCCCTTTATGACTTAAGTGCCGGTGCTTGCTCCTCCCACTATTCAATATGATTGGACTGTTATAATGGCTTTAAGACGACATATGGTTTGTCTCCATAGCAACTGTGAGCCCAGGCCGGTGACCTGGAAGCAGTTGCACATCAGCCCCCATCCCCtcgcttttttctctctccctccaaccctgaAGTATGACCAAAGCATCCCCTTTCATCTTTAGCCCTAGAGGAGAAAAAAATACTGTCTCTGTTTACATACTCGTTTACATTGTTATTTATGTGCAAAATGTAAATTTATGATAAATGTCCACAGTTCTAATCTGA
>TU269838
TTTGATTAGAAAGAAAAGGCATTGCTTGACCTTCTGACCCTTCCAGCAAGCTTCTCTATGTCCACACTCATCCTGAGTTCTGCAAAAATTGCATTTTTTGTTTTATGTATTTTCAACAACGGTTACCTCAGTGTGTGTATGATTGTATGCCtgtgagtatgtgtgtctgtacgtTCAGAGGGAAGCTGAAGGAGAGTGTGTTTTCTATTTATTGCTTTTGCTACTTGAAGAAGAAACCAAAA

Function

symbol description
prdm1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus.

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0045597 positive regulation of cell differentiation biological_process
GO:0035138 pectoral fin morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593764.2 False 4086 mRNA 0.53 7 22903729 22915153
XM_021593770.2 False 4079 mRNA 0.52 7 22903729 22919447
TU269838 True 242 lncRNA 0.40 1 22904392 22904633

Neighbor

gene id symbol gene type direction distance location
LOC110514295 LOC106605350 coding downstream 33982 22867615 ~ 22869747 (-)
LOC110503928 LOC106581194 coding downstream 37326 22849505 ~ 22866403 (-)
trnap-agg-7 NA coding downstream 54434 22849224 ~ 22849295 (-)
bbs9 bbs9 coding downstream 54974 22643841 ~ 22848755 (-)
bmper LOC106581223 coding downstream 261968 22618094 ~ 22641761 (-)
LOC110514322 LOC106581161 coding upstream 118313 23037760 ~ 23051032 (-)
LOC110514382 NA coding upstream 219189 23138636 ~ 23140888 (-)
LOC118944658 LOC100136303 coding upstream 221387 23140834 ~ 23142966 (-)
LOC110514348 LOC106581121 coding upstream 225069 23144516 ~ 23164384 (-)
LOC110514368 LOC106581124 coding upstream 253163 23172610 ~ 23196343 (-)
G236085 NA non-coding downstream 2959 22900527 ~ 22900770 (-)
G236084 NA non-coding downstream 3796 22899717 ~ 22899933 (-)
G236082 NA non-coding downstream 6193 22897320 ~ 22897536 (-)
G236049 NA non-coding downstream 54576 22848844 ~ 22849153 (-)
G236003 NA non-coding downstream 133066 22769166 ~ 22770663 (-)
G236095 NA non-coding upstream 1391 22920838 ~ 22921076 (-)
G236120 NA non-coding upstream 36160 22955607 ~ 22955819 (-)
G236133 NA non-coding upstream 47899 22967346 ~ 22967571 (-)
G236169 NA non-coding upstream 74321 22993768 ~ 22994150 (-)
G236174 NA non-coding upstream 78184 22997631 ~ 22997973 (-)
G235881 NA other downstream 328740 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1148228 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1160318 21738845 ~ 21743411 (-)
G234621 NA other downstream 1404897 21498408 ~ 21498832 (-)
G234600 NA other downstream 1433784 21469661 ~ 21469945 (-)
G237047 NA other upstream 237662 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 852077 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1261109 24180556 ~ 24183964 (-)
G237832 NA other upstream 1601772 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1850115 24767049 ~ 24799511 (-)

Expression


Co-expression Network