LOC110514348 (LOC106581121)


Basic Information

Item Value
gene id LOC110514348
gene name LOC106581121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23144516 ~ 23164384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593788.2
CGATGTGGGGCTGGAAGTCAAACTATGGAACAGTAGTGCAGGTGACTAGTTATCATGGTATGGTAAATTGTTAGGAGGATGTCCTTGGAGACGAGGGGGGTGGGCAGGGTCATTGACTTTGTGACTGGTGTATAAATGAATCAGTCAGATTCAGTTGTCTACAGAGCTTTTACCTACATCAGCATCAAAAGTGACCTTGTTTTTTTAAGgatgATGAGATCGACCACGATGTTCCTCTTGTTGACTCTCCTGGGATTGGCATGCTCTATTGGCCCTACAGTCCCAAGAAATCTTGCCTTGCGTGGAAAAGCTACACAGTCAGACCTCATCGAGAGCCCATGGCACGGTTTGAGTCATGCCTCCAATGCCATTGATGGGAACCGCGATTCACATTTCCATCATGGGTCCTGTACTGCCACTGACGAATCCACTAACCCTTGGTGGAGAGTGGACCTGCTTGACACCTACATAGTCacctccatcaccatcaccaacaGAGGGGATGCTGTTCCTGAGAGGCTTAACGGGGCTGAGATACGAATAGGAAATTCTTTAGTGGACAATGGCATTCATAACCCTCTGGTTAAAACAATTCCCTCTGTTCCAGCCGGCAGTTCTCTCACCCTTGCTTTTGACCCAAGTTTCGAAGGACGTTATGTGATTGTGGTTCTACCAGGCCAGCATAGACTTCTGACACTCTGTGAAGTGGAAGTTTACGGATACCTTGCCCCAACTGGAGAGAATGTGGCTCTATATGGAAAGGCCACCCAGTCGTCTTTGAATGAGTTTGGCATTCCAGGCAATGCTATTGACGGGAATCGCAACGCTATTTGGATAGGAGGGTCCTGCACCCACACTCTACAGGACATCAACGCCTGGTGGAGGGTGGACCTTCTGAAGACCTACAAAGTGTtctccatcatcatcaccaacacaGTCGACAGTGTTCCCAGCAGACTCAATGGAGCTGAGATTCGCATTGGAGATTCCCTGAAAGACAACGGCATCAATAATCCTAGGTGTGCTGTGATCTCCTCTATCCCAGCTGGCAATTCAAGCACCTTCCAGTGTCCGGGCATGGAGGGTCGATATGTCATCGTGGTCATTCCAGGGAGGAAGGAGTACCTGACCTTGTGTGAGGTGGAGGTGTACGGATCACCCCTGGATGGGACTGGGCCTACATGTAACTAAATCAGATCGTTAACTCTTAACAGCACCCTGCAATGTTTGGGGAATGTATTGTCTTACGAAAACAATTCAACTTTTCAGTATACTATCACTATTCTGTAAGTTCGTCTTGCACACTGTTTTTGGATGTTTGGGTATAAATTGACGAACACTTTTTGTAACACTTTTTAAGAACAACTTTCATGAATTATTATGTAGCCTAATTATTGGTTAGACAGTTATCATTCATACCTTGAAATGCATGTAATGCTGTGAAGTAATGCTATTATGTTAGAATGAATGGTCCCGCTTTAAATGACGTTCAgattataaaggcttcataaagccttAATAATGCCTTCATAAGCAGTACATAAATGTTTACAAAGCATCTATAACcatatgtcatgctttataaaaggttcataaatgtggcataactgtgtgacataatCACCTATATCAAATGTGATATAACCCACTAAGTCAAATATGATATAAAcatgtgctttataaagggtgacGTGCTGAAGGATGGAAAACGCTCTAAAGGGATGTCATCTTAGTCACATTACACCTAATCTCGTTCCCAGACACTTCCGCCCAAATGCTCAGAAGGTCTGATGGACCAATGCATCAAACTTGGCCTTCATTAGTCAGGGTTAGgtttcaaatcacattttaacaAGATAAAGTGTGGAAATGGGCAGGGTTTAGCCAAAATTATGACTTTTTTGTTTGTTAAGTAGTGACGATGACAAATACTTTACTCAGTAAGGTCACTGCTATAGAATTCTATAGTCACTCCCACTATGCCCAATTTTGAATGGTTGATATCCCAGGCGTCAATGTGCTGTGTGAGCAATAGCCTGAGAGCAACATTACACCAAGAAACACTTACCTTGGTGAAAGTCCCCAATCTAAAGACATTGAAAGTGTCTTTCTTCTGGAACCAAGTTACATGTTCCTCATTACACAAACATGAAAACAACAAAAACGAGCCATACCACACAGTGCTGGGCCCTGTGAAGTCTTTGACACATTCACCCATTTCCCCGCTGAAAGATCAGCCACAAAATGTTGTAATCAAGTCTGTCTACTTTGGTCATTTATGACACATGCATAAATGCCTTATATTATATGACGCTGTACTTAATATAAGGTCAGACACCTTTGGTCATTCCTAACACATGCATAATGGCTTAATGATGTTAACACAACTGTATTAACACATAGGGAATTGGCATTAAATGATAAAACAAGAAAACATTAAAGAAATGTTTAAaccatacagtacatttattttatttatacatttttaaaacaatacaaatacatGACATTTCAAAAAGTCCAGCAATGCCATTACattgaacattacacagggctgtgaatagtccAGCTTGTCCCTGAGCTGGCAGGAGAACGGTTCTTGACTCCCTTCTTGCTGGAGGTACTGGGTGTTGGTTCCAACCTAAATGAACAACAAAGTTAGCAGGTCTGTTAGGAAAGGTCGTTTGTCACACCATCTAGATAAGGGCATTTCTGTGCTGCACAAGAAACTCTAAACGGGAAGATGGGGAAACTCCATTAAAAATGTATTGTTACAATACAGCTATGAGACATGTATGTATGTAGGGGATATGTATTTAGCTGAGCCTGCTAGCTAACTACATTTTGTCTAGCTAGTAATTGCTGTGAAGTCACCGAAATGATTTGAAATAATGATTgaggtagctacagtatgtaatcTAACTCAACACTTAACTACTACCAACACATTTAAATCacaataaataaaggttaacttaCTTGTTTTGGGCATTATTCCCATTCAAACTCCTAGAATTTTGGAAATGTTCCAAATAAAGTCCCCCACGTAATAACAGAAAAGTCTCAAAAACCATTCATGATATATGAAAAATAATTGTCTAAATATTAAACATATTTTTAAGTGACATTTGCATTAAATGTGGGTTTTAAAACATGTTCCAAGGTCAAATAAGTGCTCCCAATGCAAATCACCATATATAGAATACATATTGGCTTAGAGCAATAACTATTCTGGGTGCAGCAGTACAAGTATTGCAGGGAATACTCAATAGGGTCTGTAGAAtgaatgtacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcatgtagaggtctgtattttttttttatcataggtacacttcaactgtgagagatggaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgcatcttattgcatgacataagtatttgatacatcagaaaactGTATATATACGTTGTCATTTCATGGGGCTCAAAATAATTTTGGAATGTGGCCGGCCTTTTACTCTACCCATTCTATTGGCGGCCAGATCACATCATGAGTGCTTACTGCACTACAGAAAGAAAACCTGCTAACAAAACAACAGTGCAGAGCATGCTCAGTGAATTAAAGAGCAACTACACTTACAAATATACGTTTCTTCGATTTTTCACAGACCTCAAAAGTCTGATGTGGTTTAAGAATTGTTGTGAACACAGAAAATGaaatgttgtttttctattaagAAAGTGCGAAAACACTGGGGGAAACCAGAAAGAATGGGGAAAATCTGAAACCCGGAAAAACAAAACCAAGAAAACAGAATTTGGTGGGGAAAAAGAAGTAGGCAACTACAACAAACAGACTAACGATTGTAAAAGGCCCTACCAAGGTTTTTTGCTTTGCATGACTGCACTTTAGAGTCTGTGTTCTCCTGCAGCACAGCATTTTGGGGGAAGCTGAAGTCAAGTCCAATATTGACTATGCACCCAagagggaaaggggaaaggggttGGGCCAATCTAGAAatgacacttttatccaaagcgacttacagtcagtcATACGTGAATACATTTTTACGTATTATAGGGTGTTGAATCGAATCGAACCCAATATCCTGTCGTTGCAATGCTCTACCAAGATGTATGACAGGGTTATAAATGCTTTGTGAAGCCACAATTGAATATGATTTATAAGCTCTTTATTAAGCGGTGCTCATGCCACCCTTTATAAAGGACAGGTTTGTATCATTTTTGACATAGTGGGTTTTGTCCCCTTAGACATTGGTGGTTATGGAGAACAGTgatgccacatttatgaaccctttataaagcatggCATACGGTTATAGATGATGTGTAACacatttatgtagtgtttatgaaggTTTTAGGAAGCCTTTATAAGCTGCACGTCATTTAAAGTGGGACCAAATTCATGAATAAACTTAATTAATACATCTGGAA

Function

NR:

description
uncharacterized protein LOC110514348 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593788.2 True 4511 mRNA 0.40 6 23144516 23164384

Neighbor

gene id symbol gene type direction distance location
LOC118944658 LOC100136303 coding downstream 1550 23140834 ~ 23142966 (-)
LOC110514382 NA coding downstream 3628 23138636 ~ 23140888 (-)
LOC110514322 LOC106581161 coding downstream 93484 23037760 ~ 23051032 (-)
LOC110514303 prdm1 coding downstream 225069 22903729 ~ 22919447 (-)
LOC110514295 LOC106605350 coding downstream 274769 22867615 ~ 22869747 (-)
LOC110514368 LOC106581124 coding upstream 8226 23172610 ~ 23196343 (-)
LOC110503934 LOC106581009 coding upstream 177739 23342123 ~ 23368891 (-)
LOC110514498 LOC106580978 coding upstream 241869 23406253 ~ 23563491 (-)
LOC110514548 LOC106580919 coding upstream 545620 23710004 ~ 23713322 (-)
LOC110514538 tmod4 coding upstream 555005 23719389 ~ 23729898 (-)
G237028 NA non-coding downstream 126 23143960 ~ 23144390 (-)
G237033 NA non-coding downstream 612 23143514 ~ 23143904 (-)
G237041 NA non-coding downstream 21440 23122483 ~ 23123076 (-)
G237009 NA non-coding downstream 79556 23064754 ~ 23064960 (-)
G236994 NA non-coding downstream 107813 23036088 ~ 23036703 (-)
G237068 NA non-coding upstream 26227 23190611 ~ 23191037 (-)
G237069 NA non-coding upstream 29639 23194023 ~ 23194443 (-)
G237080 NA non-coding upstream 43366 23207750 ~ 23207980 (-)
G237092 NA non-coding upstream 71354 23235738 ~ 23235942 (-)
G237108 NA non-coding upstream 101685 23266069 ~ 23280190 (-)
G235881 NA other downstream 569527 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1389015 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1401105 21738845 ~ 21743411 (-)
G234621 NA other downstream 1645684 21498408 ~ 21498832 (-)
G234600 NA other downstream 1674571 21469661 ~ 21469945 (-)
LOC110514600 ensa other upstream 607140 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 1016172 24180556 ~ 24183964 (-)
G237832 NA other upstream 1356835 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1605178 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1772132 24936516 ~ 25052970 (-)

Expression


Co-expression Network