LOC110514368 (LOC106581124)


Basic Information

Item Value
gene id LOC110514368
gene name LOC106581124
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23172610 ~ 23196343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593802.2
GGTAAATTGTTAGGAGGATGTCCTtggagacgaggggtgggggCGTGTTTGACTTTGTGACTGGTGTATAAATGAATCAGTCAGATTCAGCTGTCTACAGAGCTTTTTGCCtacatcaacatcaacagtgacCTTATTTTGTTGAGTGTGAAGGATGGTGAGATCAGCCATGATGTTCCTCTTGTTGAATCTCCTGGGACTGGCAGGCTCTATTGGCGCGACCGTCCCAAGAAATCTTGCCTTGCGTGGAAAAGCAACACAGTCAGACCTCATCGAGAACCCATGGCACGGTTTGAGTCATGCCTCCAATGCCATTGATGGGAACCGCGATTCACATTTCCATCATGGGTCCTGCACTGCCACTGACGAATCCACTAACCCCTGGTGGAGAGTGGACCTGCTTGATACCTACATAGTCACCTCCATCACCGTCACCAACAGAGGGGATGCTGTTCCTGAGAGGCTTAACGGGGCTGAGATACGAATAGGAAATTCTTTAGTGGACAATGGCATTCATAACCCTCTGGTTAAAACAATTCCCTCCGTTCCAGTTGGCAGTTCTCTCACCCTTGCCTTTGACCCAGGCTTCAAAGGACGCTATGTGACTGTGGTTCTACCAGGCCAGAAAAGACTTCTGACACTCTGTGAAGTGGAGGTTTATGGCTACCTTGCCCCAACCGGAGAGAATGTGGCTCTATATGGAAAGGCCACCCAGTCGTCTTTGTATGGGTTTGGCATTCCAGGCAATGCTATTGACGGGAATCGCAACGCTATTTGGATAGGAGGGTCCTGCACCCACACTCTACAGGACATCAACGCCTGGTGGAGGGTGGACCTTCTGAAGACCTACAAAGTGTtctccatcatcatcaccaacacaGTCGACAGTGTTCCCAGCAGACTCAATGGAGCTGAGATACTCATTGGAGACTCCCTGGAAAACAACGGCATCGACAATCCTAGGTGTGCTGTGATCTCCTCTATCCCAGCTGGCACTTCTAGCACCTTCCAGTGTCCGGGCATGGAGGGTCGATATGTCATCGTGGTCATTCCAGGGAGGAAGGAGTACCTGACCTTGTGTGAGGTGGAGGTGTACGGATCACCCCTGGATGGGACTGGGCCTACATGTAACTAAATCAGATCGTTAACTCTTAACAGCACCCTGCAATGTTTGGGGAATGTATTGTCTTACGAAAAACAATGAATGTTTTTTAGTATACTTCCAGTATGTTAATGATCAAAAATGTGTATTTACTTTCAGTATACAAAAACAAATTTGGTCCCCTGTTCTGGACACTGTTTTTGGAAGTTTGGGTATAAATTGGCCAACTTTTTGTGTAACACAAAAATATTCATACATTTCTTGTAGCCTAATTATTGGTTGGATGGTTCACATTGATACTTAGAAATACATATAATGCTTTAATACTATTGCTATTATGCTAAAATGAATTAAAGGTGAAATCTTGGATCTGGAATGTTTCCATGATGTATTTGGTTGTTTGTGCTCGTAGTCTGTAAATAGGTCCATTTTGGGCTCTGTACAATAATCCACTCTTTGCCATAGCCTGTTCCCTCTAAAGTTGTATCCCTATCTTCTACTCTAAATTATTCTATTGTGGTCGGAATTACTGCAGATGACTTTATTGCTTGCTGCCCTCATATCATAAAACATGGTGAACAAAGTTTGAAAGACCATAAACATAAGCAAATATTTACCAGCTACATTAATATACGGCTGAATGCTACTCAGATGACCAGACGAGGACCAGACCAAATCAAGCATACATCAACATACGTTTAAACTCCACTGGACTTTAGGTTAGAGAATATGACAGAATCCACCACTAGTCCGCCTGGgattgtgtatgtgacaaataaaatttgatttgatttgaa
>XM_036972420.1
TATTATTTTGAGTGTGAAGGATGGTGAGATCAGCCATGATGTTCCTCTTGTTGAATCTCCTGGGACTGGCAGGCTCTATTGGCGCGACCGTCCCAAGAAATCTTGCCTTGCGTGGAAAAGCAACACAGTCAGACCTCATCGAGAACCCATGGCACGGTTTGAGTCATGCCTCCAATGCCATTGATGGGAACCGCGATTCACATTTCCATCATGGGTCCTGCACTGCCACTGACGAATCCACTAACCCCTGGTGGAGAGTGGACCTGCTTGATACCTACATAGTCACCTCCATCACCGTCACCAACAGAGGGGATGCTGTTCCTGAGAGGCTTAACGGGGCTGAGATACGAATAGGAAATTCTTTAGTGGACAATGGCATTCATAACCCTCTGGTTAAAACAATTCCCTCCGTTCCAGTTGGCAGTTCTCTCACCCTTGCCTTTGACCCAGGCTTCAAAGGACGCTATGTGACTGTGGTTCTACCAGGCCAGAAAAGACTTCTGACACTCTGTGAAGTGGAGGTTTATGGCTACCTTGCCCCAACCGGAGAGAATGTGGCTCTATATGGAAAGGCCACCCAGTCGTCTTTGTATGGGTTTGGCATTCCAGGCAATGCTATTGACGGGAATCGCAACGCTATTTGGATAGGAGGGTCCTGCACCCACACTCTACAGGACATCAACGCCTGGTGGAGGGTGGACCTTCTGAAGACCTACAAAGTGTtctccatcatcatcaccaacacaGTCGACAGTGTTCCCAGCAGACTCAATGGAGCTGAGATACTCATTGGAGACTCCCTGGAAAACAACGGCATCGACAATCCTAGGTGTGCTGTGATCTCCTCTATCCCAGCTGGCACTTCTAGCACCTTCCAGTGTCCGGGCATGGAGGGTCGATATGTCATCGTGGTCATTCCAGGGAGGAAGGAGTACCTGACCTTGTGTGAGGTGGAGGTGTACGGATCACCCCTGGATGGGACTGGGCCTACATGTAACTAAATCAGATCGTTAACTCTTAACAGCACCCTGCAATGTTTGGGGAATGTATTGTCTTACGAAAAACAATGAATGTTTTTTAGTATACTTCCAGTATGTTAATGATCAAAAATGTGTATTTACTTTCAGTATACAAAAACAAATTTGGTCCCCTGTTCTGGACACTGTTTTTGGAAGTTTGGGTATAAATTGGCCAACTTTTTGTGTAACACAAAAATATTCATACATTTCTTGTAGCCTAATTATTGGTTGGATGGTTCACATTGATACTTAGAAATACATATAATGCTTTAATACTATTGCTATTATGCTAAAATGAATTAAAGGTGAAATCTTGGATCTGGAATGTTTCCATGATGTATTTGGTTGTTTGTGCTCGTAGTCTGTAAATAGGTCCATTTTGGGCTCTGTACAATAATCCACTCTTTGCCATAGCCTGTTCCCTCTAAAGTTGTATCCCTATCTTCTACTCTAAATTATTCTATTGTGGTCGGAATTACTGCAGATGACTTTATTGCTTGCTGCCCTCATATCATAAAACATGGTGAACAAAGTTTGAAAGACCATAAACATAAGCAAATATTTACCAGCTACATTAATATACGGCTGAATGCTACTCAGATGACCAGACGAGGACCAGACCAAATCAAGCATACATCAACATACGTTTAAACTCCACTGGACTTTAGGTTAGAGAATATGACAGAATCCACCACTAGTCCGCCTGGgattgtgtatgtgacaaataaaatttgatttgatttgaa

Function

NR:

description
fucolectin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593802.2 False 1899 mRNA 0.44 6 23172610 23192782
XM_036972420.1 True 1765 mRNA 0.44 6 23172610 23196343

Neighbor

gene id symbol gene type direction distance location
LOC110514348 LOC106581121 coding downstream 8226 23144516 ~ 23164384 (-)
LOC118944658 LOC100136303 coding downstream 29644 23140834 ~ 23142966 (-)
LOC110514382 NA coding downstream 31722 23138636 ~ 23140888 (-)
LOC110514322 LOC106581161 coding downstream 121578 23037760 ~ 23051032 (-)
LOC110514303 prdm1 coding downstream 253163 22903729 ~ 22919447 (-)
LOC110503934 LOC106581009 coding upstream 145780 23342123 ~ 23368891 (-)
LOC110514498 LOC106580978 coding upstream 209910 23406253 ~ 23563491 (-)
LOC110514548 LOC106580919 coding upstream 513661 23710004 ~ 23713322 (-)
LOC110514538 tmod4 coding upstream 523046 23719389 ~ 23729898 (-)
LOC110514588 LOC106580904 coding upstream 571756 23768099 ~ 23770876 (-)
G237028 NA non-coding downstream 28220 23143960 ~ 23144390 (-)
G237033 NA non-coding downstream 28706 23143514 ~ 23143904 (-)
G237041 NA non-coding downstream 49534 23122483 ~ 23123076 (-)
G237009 NA non-coding downstream 107650 23064754 ~ 23064960 (-)
G236994 NA non-coding downstream 135907 23036088 ~ 23036703 (-)
G237080 NA non-coding upstream 11407 23207750 ~ 23207980 (-)
G237092 NA non-coding upstream 39395 23235738 ~ 23235942 (-)
G237108 NA non-coding upstream 69726 23266069 ~ 23280190 (-)
G237086 NA non-coding upstream 93189 23289532 ~ 23290982 (-)
G237114 NA non-coding upstream 97777 23294120 ~ 23294323 (-)
G235881 NA other downstream 597621 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1417109 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1429199 21738845 ~ 21743411 (-)
G234621 NA other downstream 1673778 21498408 ~ 21498832 (-)
G234600 NA other downstream 1702665 21469661 ~ 21469945 (-)
LOC110514600 ensa other upstream 575181 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 984213 24180556 ~ 24183964 (-)
G237832 NA other upstream 1324876 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1573219 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1740173 24936516 ~ 25052970 (-)

Expression


Co-expression Network