elp6 (LOC106581052)


Basic Information

Item Value
gene id elp6
gene name LOC106581052
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23302772 ~ 23306081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972443.1
AAGAAGTCGAAACGCTTTTCACATACTCAGATTCTACTGCACGAAGAGAGGGACAAACTACGGTCGTGTATCATGCTACTTTTTCACAACAAACATTCGGAAAAAGAAGTAGCTATGAATAGGGAATTGTTTTGAACATATTCAATTAATGTAGTTATTATTGATGAAAATGTACTTTGAGTTGTTGTGATTTGTCCTGGATAACGCAAAAAAAAATCGTGTCAACAATCTAGCCAACTTCATAGCCTCCCTCGACAGTCTGCactactactgtagctagctaaatgtACTTTCTTGGTAGTGTTAAGCTTTCATATGTAAAGACATTGGTTAagatatctagctagctattAATAAAGTATTATCTAGCTAACTAGCAACTCACCAGAAGACATCCCAAAGATTCGTATGAGATAAATCTTCACTCCTTCGCAAGATGTTTGCAGAGCTCAACAGTATTCTCAATACTAGTCCTGACAGCTTCAAGCCGgGAGAGTTTATTTTAGTGTCTGACAAACATACAGACGCGTCCTTCCTCATTCACCATTTCCTCTCCTTTTATTTACGAGCGGGCTGTAAGGTGTGTTTCCTGGGTCTTGTGCAGTCCTTCAGTCACTACAGTGCAATCAGTCAACGGTTGGGTGTGAGTTTGACCCAGGGAAGGGAGAAAGGGCAGCTGGTGTTCCTAGAGGGACTAAAGGAATCCTTGGGGGTACTGCTTCAGGGGGAGGCCAGCAAAGAAACCCGGACAATGGACTTCCTCAGAGATCCCAGTTCCGGCCTGCGGGGTCTATATGACTTTGTGCGAGACAATGTAAGGGGGGCAGTGGGTGGAGCTGAGGAGTGGGGTCCCCCTGTGCTCCTGGTGGATGACCTCAGTGTGGTCCTGAGTCTGGGGGTCAGTGTTGGGGCAGCGCTGGACTTCAGTCATTACTGCAGAGCCACTGTCTGCTCCGAGCTGCAGGGCAGCATGGTGATGTTGGTGCGATGTGAggcagaagaagaagaggagagtgaTGATGAAGGCTCAGAGCGGCTCCTGAGGGGCCTTATACACCAGTGCAGCCTCACACTCCAAGTACAGGGTCTTCCCACTGGCTACTGCAGGGACATCCACGGACAAGTCAGATGGATTacatgatttgtgtggaAGTGTGCTGGCGAGGACAATGTGACAGGCAGCAGGCCCAGAAGAAACTCTTCCAGTACAAGGTCCATGACAAGGGGGCTTCCTTTTTCGCCAGGGGGATGTCCAGTGCAGTCCTTTGAGCCCTCAATGGATCCCT
>XM_021593832.2
AAGAAGTCGAAACGCTTTTCACATACTCAGATTCTACTGCACGAAGAGAGGGACAAACTACGGTCGTGTATCATGCTACTTTTTCACAACAAACATTCGGAAAAAGAAGTAGCTATGAATAGGGAATTGTTTTGAACATATTCAATTAATGTAGTTATTATTGATGAAAATGTACTTTGAGTTGTTGTGATTTGTCCTGGATAACGCAAAAAAAAATCGTGTCAACAATCTAGCCAACTTCATAGCCTCCCTCGACAGTCTGCactactactgtagctagctaaatgtACTTTCTTGGTAGTGTTAAGCTTTCATATGTAAAGACATTGGTTAagatatctagctagctattAATAAAGTATTATCTAGCTAACTAGCAACTCACCAGAAGACATCCCAAAGATTCGTATGAGATAAATCTTCACTCCTTCGCAAGATGTTTGCAGAGCTCAACAGTATTCTCAATACTAGTCCTGACAGCTTCAAGCCGgGAGAGTTTATTTTAGTGTCTGACAAACATACAGACGCGTCCTTCCTCATTCACCATTTCCTCTCCTTTTATTTACGAGCGGGCTGTAAGGTGTGTTTCCTGGGTCTTGTGCAGTCCTTCAGTCACTACAGTGCAATCAGTCAACGGTTGGGTGTGAGTTTGACCCAGGGAAGGGAGAAAGGGCAGCTGGTGTTCCTAGAGGGACTAAAGGAATCCTTGGGGGTACTGCTTCAGGGGGAGGCCAGCAAAGAAACCCGGACAATGGACTTCCTCAGAGATCCCAGTTCCGGCCTGCGGGGTCTATATGACTTTGTGCGAGACAATGTAAGGGGGGCAGTGGGTGGAGCTGAGGAGTGGGGTCCCCCTGTGCTCCTGGTGGATGACCTCAGTGTGGTCCTGAGTCTGGGGGTCAGTGTTGGGGCAGCGCTGGACTTCAGTCATTACTGCAGAGCCACTGTCTGCTCCGAGCTGCAGGGCAGCATGGTGATGTTGGTGCGATGTGAggcagaagaagaagaggagagtgaTGATGAAGGCTCAGAGCGGCTCCTGAGGGGCCTTATACACCAGTGCAGCCTCACACTCCAAGTACAGGGTCTTCCCACTGGCTACTGCAGGGACATCCACGGACAAgtggaAGTGTGCTGGCGAGGACAATGTGACAGGCAGCAGGCCCAGAAGAAACTCTTCCAGTACAAGGTCCATGACAAGGGGGCTTCCTTTTTCGCCAGGGGGATGTCCAGTGCAGTCCTTTGAGCCCTCAATGGATCCCTTCTGCCTCCCTTCCCAGTGTTGATCCCCATTCCCTCACCTCTCAGTCACATGGCTCTCTGGGCTcaaccatagagaatgatagagaccAAAAGGCTATATTAGCATGGGCAGCTATTGTACCTccgccattttaaagtagtcaacctCATGgaacttccaacttcattggctgatccctcctggtgactGTTGGAATCATGTCCAACTGGGTCATCAGAAGGGATCAGTCAATTGtgaagaagaaaatggactacttcaaaatggagatgccTTAATGGAGCTGCCTATGCTGTCATATATGTAATGGCACAGCTACAAAGATGGTAATGATCATGAAACAGGTCGGGATCAGTTTTGAACTGGAGATGTGGTATTGAATTGAACATTGGATTTCCGCTTTAAAACCAACCCAGCACATGCATTGCAAAGCTGACATAGGAAGCCTGGGTGAATAGGTAATTTCTCAAGCCACATGTGAACTGACCTGACTAGGTTGCACTTGTgttatacaaaacaataaacggcACATTTAA

Function

NR:

description
elongator complex protein 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972443.1 False 1286 mRNA 0.48 7 23302772 23305547
XM_021593832.2 True 1797 mRNA 0.47 7 23302772 23306081

Neighbor

gene id symbol gene type direction distance location
LOC110514420 LOC106581064 coding upstream 11776 23236262 ~ 23290996 (+)
smarcc1a LOC106605342 coding upstream 75204 23210418 ~ 23227568 (+)
LOC110514335 LOC106581155 coding upstream 169698 23119383 ~ 23133074 (+)
LOC110514282 LOC106581183 coding upstream 408996 22869740 ~ 22893776 (+)
LOC110514168 LOC106581241 coding upstream 684689 22612036 ~ 22618089 (+)
LOC110514448 LOC106581016 coding downstream 151 23306232 ~ 23342019 (+)
LOC110514472 LOC106581037 coding downstream 62923 23369004 ~ 23374440 (+)
LOC110514513 LOC106580947 coding downstream 371281 23677362 ~ 23696446 (+)
LOC110514526 LOC106605333 coding downstream 396584 23702665 ~ 23708816 (+)
LOC110514561 NA coding downstream 407290 23713371 ~ 23718761 (+)
G236359 NA non-coding upstream 4875 23297610 ~ 23297897 (+)
G236356 NA non-coding upstream 20505 23281412 ~ 23282267 (+)
G236330 NA non-coding upstream 67833 23234719 ~ 23234939 (+)
G236314 NA non-coding upstream 93254 23209289 ~ 23209518 (+)
G236312 NA non-coding upstream 94557 23208008 ~ 23208215 (+)
G236325 NA non-coding downstream 774 23306855 ~ 23307684 (+)
G236363 LOC100194703 non-coding downstream 4479 23310560 ~ 23310914 (+)
G236615 NA non-coding downstream 442348 23748429 ~ 23748663 (+)
G236301 NA other upstream 103697 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 122473 23144516 ~ 23191853 (+)
G235571 NA other upstream 603938 22672736 ~ 22698834 (+)
G235569 NA other upstream 622044 22673525 ~ 22685509 (+)
LOC110514034 NA other upstream 829855 22460524 ~ 22472917 (+)
G236370 LOC106581434 other downstream 40799 23346880 ~ 23349378 (+)
G236372 LOC106581434 other downstream 44010 23350091 ~ 23350815 (+)
LOC110514613 hormad1 other downstream 486716 23780400 ~ 23795199 (+)
LOC110514733 LOC106580799 other downstream 602669 23908750 ~ 23932207 (+)
G236753 NA other downstream 749238 24055319 ~ 24055667 (+)

Expression


Co-expression Network