LOC110503934 (LOC106581009)


Basic Information

Item Value
gene id LOC110503934
gene name LOC106581009
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23342123 ~ 23368891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972432.1
ATATGTAATGTAGTTATTGCCCAACCAAAAATACTGAATATAGCAAGATGTTTCAAATTCAAACCTCTGGTGAAACAACTAGTCTGATCTAATATAGTGAACTACATTTTCCATAAACATTTGCACACTGGAACATTCCTTCTGGCGTCACGTCCCTTAGCATCCATCGTTTCCTGTTGAAGTGTAAATGGGGACATGACAGTTGTTTGGGGATTATAAGAAACAATATAGTATAAATCCACTGAATTCAAAACTGCTGAAGTGATATTTAAATAGTCACTTGAACTCAGGCTCGGTGCAGTCGCTGGCAGCGATGGAGGCGGTCCCCCGTATGCCAATGATCTGGCTGGATCTGAAAGAGGCAGGAGAGTTTGAGTTCAGCCCGTCCGTGAGGCAGTTCATCCTGAAGAACTATGGGGAGAATCCAGACAGCTATAATGAACAGCTGAAGAAGCTGGAGACACTGAGACAGGGTGCGGTGAATGTGACGCGGGACTTTGAGGGCTGCAGCATTTTGAGGAAGTACTTTGGGCAGCTGCACTACCTCCAGAGCCGTGTGCCTCTGGGGCCTGGGCAGGAAGCAGCAGTACCCATCTCATGGACAGAAATATTTTCTGGAAAAACAGTCACTCATGATGACATCAGCTATGAGCAAGCCTGCATCCTCTACAACCTGGGTGCTCTCCACTCCATGTTGGGAGCCATGGATAACAGGGTGTCTGAAGAGggGATGAAGGTATCATGTACACACTTCCAGTGCTCCGCGGGGGCCTTCTCCTACCTGAGGGACCACTTCAGCCACAACTTCAGCGTGGACATGAGTCACCAGATCCTTAACCTCAACATCAACCTCATGCTGGGTCAGGCTCAAGAGTGTCTCCTGGAGAAGTCCATGCTGGACAACAGGAAGAGTTTCCTTGTAGCCCGCATCAGTGCTCAGGTGGTGGACTACTATAAGGAGGCATGCAGGGCTCTGGAGAACTCTGACACGGCTTCCATGCTGGGTAAAATCCAGAAGGACTGGAAGAAACTGGTGCAAATGAAGATCTCCTACTTTGCTTCCATCGCCCATCTGCATATGGGGAAGCAGGCTGAGGAACAACAGAAATATGGAGAGCGGCTGGCTTACCTGCAGAGCTCATTAGACAAACTCAGTGAAGCCATCAAGTTGGCCAAGGGTCAGCCGGACAGTGTGCAGGAGGCCTTGAAGTTCACCATGGACGTGATAGGGGGAAAGTTCAACTCTGCCAAGAAAGACAATGACTTCATCTACCATGAGACTGTCCCCTCGTTGGAGACTCTTGCTTCCGTCAAAGGTGCCCCCTTGGTGAAGGCCTTGCCCGTGAACCCAACTGATCCCAGTGTCACAGGACCAGACCTGTTTGCCAAGCTGGTGCCCATGGCTGCCCACGaggcctcctctctctacagtgaagAGAAGGCCAAGTTGCTACGGGACATCATGGCCAAGATAGACAGCAGGAATGAGACTCTAGAGCAGTTTATGGACTCTCTGGGTCTGGAGCCAGACTCTGTAGATAACCTGGACATGTACACTCACATCCCCCCTGTACTGATGGAGAAGTGTGCTGCGCTCAGTGTCAGACCAGACACCGTCAAGAGCCTCATTCAGTCCATGCAGGtcctgtctggtgtgttcaCGGACGTGGAGGCGTCTCTGAGGGAGATCCGGGATGTGCTGGAGGAGGACGAGGCCGGGGTGCGGGCGCTGCAAGAGGCGGCAGGAGGAGGCCACGCAGCGGAGCTGCACCCCCAGGCACATGCCCAGACCCTGGCTGAGATCCGCAGGGACCTGGAGAAGTACATGGAGGCCCATGAGAAGGCCAGCTTCaccaacacagagttgcacagaGCCATGAACCTGCACATCAGTAACCTGAGGCTGCTGGGGGGACCACTGGATGCCCTGAGAGACGCCCTGCCGAGGCCACAACTCAACCAGGAGGAGGTGGCGGGGCTGCAGTGCATGAAGAGGATCCTGGGTAAGGTGCAGGAGATGAGGGACCAGAGGAGCACCCTAGAGAAACAGCTGCGTGACCTCGTCCAGCAGGACGACATCACTTCCTCCCTGGTCACTACCGAGCGCACTGACATGAAGaGGTTGTTTGAGGAGCAGTTGAAGAAGTATGAGCAGGTGAAGGTGTACATCGACCAGAACCTGTCTGCCCAGGAGAACATCCTCAAGGCTCTGACGGAAGCCAACGTGCAATACGCCTCGGTCCGCAAGGGCCTCGCCGAGACGGAACACAAGTGGAACGGCACGGTGCAGACCCTGGTGGCGTCCTACGAGGCTTACGAGGACCTGATGAAGAAGTCCCAGGAGGGGAAGGAGTTCTATGAGGACCTGGAGACCAAGTCCTCCCGCCTGCTGGAGAGAGCTAAGACTCTGTGTCAggccagggaggaggagaggaaggccgTGCTGGACAGGGAGACCCAGAAGAATCCCCCTTCTCGGCCCACTGCAGCCAAACCGTCCCTGGGGTCCAAGGGGGGCTCTGACGTGGACTCTGCCTGTTCTAGTTTGGAGGATGCCGAGCTAGCCCAGATCAACGCTGCTATACTGAGCCTGGGAGGAGACCTGCCTGACGAGCTCCGTAGTATACCCCCCGACCACCCCTCCCTGCACTCTGCCATTCGCCCGGGACCTGAGGCTTTCCTTCCTAGTGCCAACCTGGGTGGCAATGCTTCATTACCCTGGCCAGGGGCGCCTGGGGCACCGCTCTATACCCCTCAGTTCCCACCAAACCATCGCCCGCCTCAGTTCCCCGGCCCACTCCCCGCCCAGCGTTTCCCTCGCGGACCCTTCACTCAGCTACCCCCCCAGCAGACCCCTGTTTCTGGCTATGGCCCTCCCCAGCCGCAAGCCCCCCAAGCTGGGGGAGTCGGGCCTGCCTGTGCCCATTTCCGTCCCTCCACTActacagtagatagtatccagaccCCCATCCCCAGTTATAACTCAGCCCCACGCCACCCTGTACCACCTACTGTCTCTGCAGGCTACGCTGTTCCCCCACAGATGGGTATGTACCCACAGTACATGACCCAGCCTGGGGTGCCCATGCAAGCGCCCAGCCAGGTGCCACACCAACATCCACAGCATCAGTACCAACACCCTCCTGGGCAGCTGCCCCCTGGCTACCAGTCTGCCCCCAGGGCGATGCCCGGGCCCCGACCCCCTCCCCAGGCACAGCAGGGTTACCCACAGTACATCCCCCCCCAGCACCAGCCCCGGCCACCCATGCCCCCCCAGTATCAGCAGCCATATCCTGGTCAGCCCCAGCCACAaccccagcatggctaccagcccCAGTTACCACAGGGCTATCAGCCTCAACACCCTCAGCAGGGCTACCTGCCCCAACAGCCCCCACACATGATCCCAAGGGGCCCTCACCCACAGATGCCCACCACTTCCCAGCCCATGCCTCCTGTCTCCCAACCATACATGCAACCTGCCAACCAACAGATGCCCCTGCACCCTCATCAGCAGATGCTACCtccccaacaacaacaaatgcATCCCAACACCCAGCAAATGCACCCGCATCCACAAATGCACCCTGGCCCTCATCAGCAGATACCCCCTAACAGCCAGCCAATGCCCCCAGTTTCCCAGGCTTACCTGCCCCCCACCAGCCAGCCCATGCCCCCTGGCCTGCACCAGCCCATGCCCCCTGCTTCCCAGCCCCAACATGTCCACCTCCCTCAGGCTTACCTGCCCAGGGGCCCCCTCCCACCTCAGGGGCCCCAGATGCCCCACCCTGGTCAACCCCCCCAACATGTCTACCAGCCCCAGTTACCACAGGGCTACCAGCCTCCTATAATGCCTCAATCAGCCCCCCAACAGTCCCAGGTTCCCCAGCCTGTAGCCCCCATGACCCCCACCATGTACCCTACTCCTCCAGGTGTGAACGGCTCTCCTGGAGTCCCACCACAGCCCACCTCTATGGGCCAACCTCGGCCCCCTCCCCAGCACATGATTCCACCAACTGCTGGAGCTCCTCCAGTGGCCCTCCCACCTAACGTCATCCTTCCCTCGccctccccttccccttctccctccccggGCCCCTCTTCCCTAGGCCTGGCTCCTCAGAGGCCCTCCCCAGCCCCCACCCCTGGTggtccaccctctctcccttcctccttatccccctccacctccctcttcccGCGCCAGAACTCCATCACAGACGACCTGCTCTCCTCCAGCCCAGAGAGCCAGCCCGGCGGCCCCAAAGCCCCCGCCAACGTCCTCCAACCCACCAAGGCTGACCCTCAGGACGGGGAGCGCCGCAAGAAGAGCTCCCAGGGCGTCCGGCTGATCCAGGGTGACCCGTACCAAGCCCCCGAACGCGTAGCCCGCCTCTGCGGCGAACTCGAACGCTTCCGGTCGGCCGTGGAGTCTCTGGAGCGCCCGTCGGTGGACGAAGGTGGCCTGTCGCCGCTGGATGCCCGCTGGAAGGAGCTCCAGGAAGGGCAGGAGAGGGACGCCAGGCAGCTGTCCATCGCCATCGCCCGCTGCTACACCATGAAGAACCGTCACCAGGACGTGATGCCCTACGACTGTAACCGCGTCCTGCTGCGCTCTGGCAAGGACGACTACATCAACGGCAGCTTTGTGGAGGAGCTGTCGCCCTACTGCCCGCGCCTCATCGCCACGCAGGCGCCGCTGTCGGGCACGGCCGCCGACTTCTGGCTCATGGTGTGGGAGCAGAAGGTTTCGCTGGTGGTCATGCTGGTCTCAGAGCAGGAGTTAGATAAGGGAAAGGTTTTGTGCTATTTCCCGACAGAACGCGGCCAGCAGCTTGCTCAGGGACCAATCACAGTCACCCTGACTACGCAGAAGACCACACCCACCCACGTGGAGCGAATGATTGGCCTGCAATACCGTGACCAGAGCCTCAAACGCACCGTCATACACCTACAGTTCACCTCCTGGCCTGAGCTGGGTCTTCCTGAGAGCAAGAGCAATCTAATCTGCTTCATCCAGGAGGTTCATGGATACTACCTGCACCAGAGGCCCTTACACACACCTATTGTTGTGCACTGCAGCTCTGGCGTGGGGCGTACCGGCGCCCTCTGTCTGCTGTATGCAGCGGTACAGGAGCTGGAGGCAGGGAACAGCATCCCTGACCTACCTCTACTGGTCCAGAAGATGAGGCAGCAGAGGAAGAACATGCTGCAGGAGAAGCTGCACCTGAAGTTCTGTTACGAGGCGGTGCTGAAACACGCTGAGCAGGTCCTCCAGAGACACGGCTACCTCCCTACCGCCCCCTGCAGCAAGACACCCAGCACTGCTGCCACCAAGCCTTACTCTCGCCAGGAGTCCCAACAGGACATCATTCTGGGAGGTGACATGACCATCAGCTCCATTCAGGCCACCATCGCCAAACTCAGCATCCGGCCCCCCAGTGCCACTGACCCAGCCATGGACCCTGTCCCTGACATTGGTGCCCCCTCTGGCCTAGAGGACCAACCCTTCACCTCCCCCACCGGCCTGCCCTTGGATAGAGAGCTAGAGCCAGCCGCCACCCCCGCCCGGGACCCCTCTCCCAGCGGAACCCAACCCTCCTCCCTCAGTCCCCCACTCTCCTCCCCAGAGGAGGTTCAGTCCCCACCACCCAATGGTGTGGATACCACCGCCCCTTCCTCGCCCCCCACAGCCAATAACCAGGTGACCCCTGATCCAGCCCCTTCCTCTGGCCCGGCCCTGAACTCTCTGGAGCTGCTGGCCTCTCTGACAGCCGAGGCCTTCTCCATGGAGGGTGGTGGGTGCAAGGGGAAGCACCGTGTCACTAAGCAGAGCTTCCTGCAGCCTGCCGAGGGCCAGGGCCTCCACCAGGGGCCCCGCGAGGAGGAGGGAGACGACCCCCTGAGCAACCTCGACCCCCTCTGGAGCCTCAACAAGAACTGAAACACAGCCACGATGCCCTCGCTCTCACTTCATAGCTGTGTCAAACTGACCTGTAGCCTTTAGTACTAGTTCTTCTTGATTCTCTGCTAATGAACCAAAATGACTAGAATGGTGGAAACTCCAAGATTCACAACTAGAAGTTATTAGTGGTAGGGGCTGGTTTGAACCTGGTTTTGAACGCTTTAGGGACACTTCAGGGGTCCTACATTCCGTCACTGGTGGCCTGGCTGTGCTTCTGGGACCGAATCACTGCACTTGTCTTTTCTTTCCCTGTCTTTCTACCTGTACCATATGGGTCTGTTCTTCACTCGCTGCTTCAGAGCTGGCCACTCAGCATCCCAGCATGCACTCCTAGCAGCAGTGTCTATGGTTCCCTCTTACAGCTGGTCGCTCTGGGCAAGGGGTTGGCGTGGACTCAGATGATAGTGACTGATAGGATTGCCAAAGGGTGGGGGAGGAGCTTGCAGACGCAGGCTCTCGTTATGTTAACCGCATACATAGAGCAGAATCAGCACGTCttaacaatattttttttcttgtcTTTCATTAACACTGTAAATATATCTTGAATAAATTTAGGTTGGCATGG

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 23-like

GO: NA

KEGG:

id description
K18040 PTPN23; tyrosine-protein phosphatase non-receptor type 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972432.1 True 6533 mRNA 0.58 23 23342123 23368891

Neighbor

gene id symbol gene type direction distance location
LOC110514368 LOC106581124 coding downstream 145780 23172610 ~ 23196343 (-)
LOC110514348 LOC106581121 coding downstream 177739 23144516 ~ 23164384 (-)
LOC118944658 LOC100136303 coding downstream 199157 23140834 ~ 23142966 (-)
LOC110514382 NA coding downstream 201235 23138636 ~ 23140888 (-)
LOC110514322 LOC106581161 coding downstream 291091 23037760 ~ 23051032 (-)
LOC110514498 LOC106580978 coding upstream 37362 23406253 ~ 23563491 (-)
LOC110514548 LOC106580919 coding upstream 341113 23710004 ~ 23713322 (-)
LOC110514538 tmod4 coding upstream 350498 23719389 ~ 23729898 (-)
LOC110514588 LOC106580904 coding upstream 399208 23768099 ~ 23770876 (-)
LOC110514600 ensa coding upstream 402620 23771511 ~ 23780158 (-)
G237114 NA non-coding downstream 47800 23294120 ~ 23294323 (-)
G237086 NA non-coding downstream 51141 23289532 ~ 23290982 (-)
G237108 NA non-coding downstream 61933 23266069 ~ 23280190 (-)
G237092 NA non-coding downstream 106181 23235738 ~ 23235942 (-)
G237080 NA non-coding downstream 134143 23207750 ~ 23207980 (-)
G237162 NA non-coding upstream 10155 23379046 ~ 23386403 (-)
G237366 LOC106580947 non-coding upstream 316263 23685154 ~ 23686730 (-)
G237396 NA non-coding upstream 380663 23749554 ~ 23749821 (-)
G237457 NA non-coding upstream 498381 23867272 ~ 23867534 (-)
G237462 NA non-coding upstream 502779 23871670 ~ 23871871 (-)
G237047 NA other downstream 153092 23157109 ~ 23189031 (-)
G235881 NA other downstream 767134 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1586622 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1598712 21738845 ~ 21743411 (-)
G234621 NA other downstream 1843291 21498408 ~ 21498832 (-)
G237657 LOC106605316 other upstream 811665 24180556 ~ 24183964 (-)
G237832 NA other upstream 1152328 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1400671 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1567625 24936516 ~ 25052970 (-)

Expression


Co-expression Network