LOC110514472 (LOC106581037)


Basic Information

Item Value
gene id LOC110514472
gene name LOC106581037
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23369004 ~ 23374440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593851.2
GGCCGCCATATTTGattctgcaaaaaatataaatattatgtTTGTTTAGCTGTGTAGAAGTTACGAAAGTGTAATAAACACACATTCGGCGGCAGAAATTAGAAGAGTTGCACTTTTAGCTAACGACTAGCTAAGtaGATGTCACTGGTGGACCTGGGGAAGCGGCTGCTGGAGGCTGCACGGGCAGGGCTGGATGATGATGTCAGGACCCTCATGGTCAATGGAGCTCCCTTCACCACTGATTGGCTGGGGACTTCCCCGCTCCATCTAGCTGCTCAGTACGGACACCACTCCACGGCTGAGGTGCTTCTCCGAGCAGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCACTCCACATGGCGGCCACAGAGGGCCACTCTAATATAGTGGAGCTGCTAGTCAGTAGCGGAGCGGACATCAACGCTAAGGACATGCTGAAGATGACAGCCCTGCATTGGGCGGCCCAGCACGGTCATAGAGAGGTGGCAGAGCTGCTGCTCAAATATGGAGCAGACGTCCACTCCCTCAGCAAGTTTGACAAGACGCCCTTTGACATCGCCATGGATACCAGCAACACTGAGCTCATGATACTGTTACAGGATGGCATGCAGAACCAAGTGAACATGAACCCCGAGCCCCAGTTCATCATCTCCTCTGCTGGGGTCGTGAACCTCTCTGACCTCGTCAACACCACCGCCAAGTCAGGTATGGGCAACTGGAGCACAGGTTACAGAGAATCTGTCTCTACCACCTCAGTCCTGGCAACACTGGCAGCCCTGGCAGAAGCCTCAGGTCCCATGGGTAAAAATGCAGGCAAATCTGAGGACGCAATCGCTGCAGATTCTGTGGATTCGGCCATTCAGCATGTAGTGGGTGATGGAGGTCAGAGGGTCATCACCATAGTGACGGACCAACACGGCAACTTGCAGCCAGCGGGACTTGGGCAGCAGTTCTTTGTCACTATGCAGGGGCAGCAAATGGTGGCAGTCCCGACTGGTCAGATCACAGAGGAGGTGGTGGAACAGGAGCCTTATCCCTCTCCTGCACGCAAGAGGAGAATAGAGCCTGCAGCCATCCTAACCAGACCCAAAGACAAGAAAGCGAAGTCGGGGGACAGCAGTCGGGAGCAGCTCCAGAAGCAGTTGCAGGAGGCCAACCGGAAGGCCCAGGAGTACCGCACACAGCTCCTACAGAAGGAGCAGGAGGCTGAGCAGTACCGCCTCCGACTAGAGGAGGCCATAGAGCAACAACAGAGCAACAATACCAGCAATGCTACTGGTTCTACCTGCACAGGTGTCCAGGAGGCAGAAGAGGAGGTGGTCCAAATGGAAAAACAACACGAGACCGAGGAGAGAGTTGTGGAGGAGGACAaagtggaaggggaggaggacgTCCCATTTCCGGAAGACACCATTCTGGTTAAAGTGGAGGAGGAGCTGGATTCAGGGGAGGGAGAACAGATAACAGTGGATGATACAGAGGAAACGGAGAAGGCTTCAACTAAGGTCACAACGACCCCCAaacgggggagagggaggggacgagGACGTGGAAGGAGGCGGTAGTCAAGCGTCCCTCTGTTCTCTTGGTGTTCTCTCATGATATGTCTTGTTTTATGCATTTATATTAATATTAACGGTTATTACTTGTTTATTTTAGAACGATAACATTGTATTTGTAACTAGGTTTTGAGATTATTTTATTTACTTGCAATACTTTTGATGAAGAAGCCATTGGCGAGCACTTGTAAGCTAACGCTGAGCCCTGTAGGAGGAGTTAAGGATGCAGATGGCTCCACCGTGTACAAAAATGTCTGTGAATTTAGAGAAAGTAAGAAAAGTTATGTTTGCATAGGAGTGTAAATACTGCAATGTGGGTTTGATTGCACTGTGCATTCATTCTCCTAAGAATAAGGTTTGCAACACATTCTAATATAGGATATTCAATCCCCAgcatttctgtttcatgtcttcAGCGTCATGTTTAAAATAGAATCAAGTTAGCTCAAGTGTATAGTGCTAACTGAGAAAATGCATCTGATTCTTCAGAAAATGTTCTAAGGCTGGCTAAGTTCTAGTTATTTGCGTACctgtatgtgtgagtgtttgggcatCTGTGGGTGAGGTCGAGGTGTGGGATATCGGTGTTTCTTTGCTAGATGGCCAGCTTTCTTAAATCTGTCTTGAATATCCTATTCTAGTACTATTTTAGCTGCAGACCACTCAGACACTAAGATACTGTAGGTTTTCCTTTTTTGTTCCAAGTAGTGTTAGATTTTAGAGTTAATGTGTAAGTCACTGTTATTCTTAAGCTCTTATTTTTGTTCCTTTTGTCATTTTAAAGCATTATACTCTGTATAGACCAGCATCTGTCAATAGACATTGATCTGTCATCGCAGTCCAGTTTAAACTAATACTCTCAGAAAAATATTGTTTACATATGCTCTCTTTATGGCTGGTTAATTTGACACTAAGTGCTTCTTTATGAACATTATAAAAGCACAATCAGGGGTTATCTTTCAGTTGgttaggagaaaaaaaaaatacaattttgctACAAAATAATGTTAGTGAGAAAATATGGGAAATTGTTTTCTATGTTGAATACCCCTTTCTTAAATGTATTTTTAGAATTCAATAAATAAGCGTTTATTGTTATTCTATCCATGCA
>XM_021593845.2
GCCGCCATATTTGattctgcaaaaaatataaatattatgtTTGTTTAGCTGTGTAGAAGTTACGAAAGTGTAATAAACACACATTCGGCGGCAGAAATTAGAAGAGTTGCACTTTTAGCTAACGACTAGCTAAGATGTCACTGGTGGACCTGGGGAAGCGGCTGCTGGAGGCTGCACGGGCAGGGCTGGATGATGATGTCAGGACCCTCATGGTCAATGGAGCTCCCTTCACCACTGATTGGCTGGGGACTTCCCCGCTCCATCTAGCTGCTCAGTACGGACACCACTCCACGGCTGAGGTGCTTCTCCGAGCAGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCACTCCACATGGCGGCCACAGAGGGCCACTCTAATATAGTGGAGCTGCTAGTCAGTAGCGGAGCGGACATCAACGCTAAGGACATGCTGAAGATGACAGCCCTGCATTGGGCGGCCCAGCACGGTCATAGAGAGGTGGCAGAGCTGCTGCTCAAATATGGAGCAGACGTCCACTCCCTCAGCAAGTTTGACAAGACGCCCTTTGACATCGCCATGGATACCAGCAACACTGAGCTCATGATACTGTTACAGGATGGCATGCAGAACCAAGTGAACATGAACCCCGAGCCCCAGTTCATCATCTCCTCTGCTGGGGTCGTGAACCTCTCTGACCTCGTCAACACCACCGCCAAGTCAGGTATGGGCAACTGGAGCACAGGTTACAGAGAATCTGTCTCTACCACCTCAGTCCTGGCAACACTGGCAGCCCTGGCAGAAGCCTCAGGTCCCATGGGTAAAAATGCAGGCAAATCTGAGGACGCAATCGCTGCAGATTCTGTGGATTCGGCCATTCAGCATGTAGTGGGTGATGGAGGTCAGAGGGTCATCACCATAGTGACGGACCAACACGGCAACTTGCAGCCAGCGGGACTTGGGCAGCAGTTCTTTGTCACTATGCAGGGGCAGCAAATGGTGGCAGTCCCGACTGGTCAGATCACAGAGGAGGTGGTGGAACAGGAGCCTTATCCCTCTCCTGCACGCAAGAGGAGAATAGAGCCTGCAGCCATCCTAACCAGACCCAAAGACAAGAAAGCGAAGTCGGGGGACAGCAGTCGGGAGCAGCTCCAGAAGCAGTTGCAGGAGGCCAACCGGAAGGCCCAGGAGTACCGCACACAGCTCCTACAGAAGGAGCAGGAGGCTGAGCAGTACCGCCTCCGACTAGAGGAGGCCATAGAGCAACAACAGAGCAACAATACCAGCAATGCTACTGGTTCTACCTGCACAGGTGTCCAGGAGGCAGAAGAGGAGGTGGTCCAAATGGAAAAACAACACGAGACCGAGGAGAGAGTTGTGGAGGAGGACAaagtggaaggggaggaggacgTCCCATTTCCGGAAGACACCATTCTGGTTAAAGTGGAGGAGGAGCTGGATTCAGGGGAGGGAGAACAGATAACAGTGGATGATACAGAGGAAACGGAGAAGGCTTCAACTAAGGTCACAACGACCCCCAaacgggggagagggaggggacgagGACGTGGAAGGAGGCGGTAGTCAAGCGTCCCTCTGTTCTCTTGGTGTTCTCTCATGATATGTCTTGTTTTATGCATTTATATTAATATTAACGGTTATTACTTGTTTATTTTAGAACGATAACATTGTATTTGTAACTAGGTTTTGAGATTATTTTATTTACTTGCAATACTTTTGATGAAGAAGCCATTGGCGAGCACTTGTAAGCTAACGCTGAGCCCTGTAGGAGGAGTTAAGGATGCAGATGGCTCCACCGTGTACAAAAATGTCTGTGAATTTAGAGAAAGTAAGAAAAGTTATGTTTGCATAGGAGTGTAAATACTGCAATGTGGGTTTGATTGCACTGTGCATTCATTCTCCTAAGAATAAGGTTTGCAACACATTCTAATATAGGATATTCAATCCCCAgcatttctgtttcatgtcttcAGCGTCATGTTTAAAATAGAATCAAGTTAGCTCAAGTGTATAGTGCTAACTGAGAAAATGCATCTGATTCTTCAGAAAATGTTCTAAGGCTGGCTAAGTTCTAGTTATTTGCGTACctgtatgtgtgagtgtttgggcatCTGTGGGTGAGGTCGAGGTGTGGGATATCGGTGTTTCTTTGCTAGATGGCCAGCTTTCTTAAATCTGTCTTGAATATCCTATTCTAGTACTATTTTAGCTGCAGACCACTCAGACACTAAGATACTGTAGGTTTTCCTTTTTTGTTCCAAGTAGTGTTAGATTTTAGAGTTAATGTGTAAGTCACTGTTATTCTTAAGCTCTTATTTTTGTTCCTTTTGTCATTTTAAAGCATTATACTCTGTATAGACCAGCATCTGTCAATAGACATTGATCTGTCATCGCAGTCCAGTTTAAACTAATACTCTCAGAAAAATATTGTTTACATATGCTCTCTTTATGGCTGGTTAATTTGACACTAAGTGCTTCTTTATGAACATTATAAAAGCACAATCAGGGGTTATCTTTCAGTTGgttaggagaaaaaaaaaatacaattttgctACAAAATAATGTTAGTGAGAAAATATGGGAAATTGTTTTCTATGTTGAATACCCCTTTCTTAAATGTATTTTTAGAATTCAATAAATAAGCGTTTATTGTTATTCTATCCATGCA
>XM_021593855.2
CCGCCATATTTGattctgcaaaaaatataaatattatgtTTGTTTAGCTGTGTAGAAGTTACGAAAGTGTAATAAACACACATTCGGCGGCAGAAATTAGAAGAGTTGCACTTTTAGCTAACGACTAGCTAAGATGTCACTGGTGGACCTGGGGAAGCGGCTGCTGGAGGCTGCACGGGCAGGGCTGGATGATGATGTCAGGACCCTCATGGTCAATGGAGCTCCCTTCACCACTGATTGGCTGGGGACTTCCCCGCTCCATCTAGCTGCTCAGTACGGACACCACTCCACGGCTGAGGTGCTTCTCCGAGCAGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCACTCCACATGGCGGCCACAGAGGGCCACTCTAATATAGTGGAGCTGCTAGTCAGTAGCGGAGCGGACATCAACGCTAAGGACATGCTGAAGATGACAGCCCTGCATTGGGCGGCCCAGCACGGTCATAGAGAGGTGGCAGAGCTGCTGCTCAAATATGGAGCAGACGTCCACTCCCTCAGCAAGTTTGACAAGACGCCCTTTGACATCGCCATGGATACCAGCAACACTGAGCTCATGATACTGTTACAGGATGGCATGCAGAACCAAGTGAACATGAACCCCGAGCCCCAGTTCATCATCTCCTCTGCTGGGGTCGTGAACCTCTCTGACCTCGTCAACACCACCGCCAAGTCAGGAGAATCTGTCTCTACCACCTCAGTCCTGGCAACACTGGCAGCCCTGGCAGAAGCCTCAGGTCCCATGGGTAAAAATGCAGGCAAATCTGAGGACGCAATCGCTGCAGATTCTGTGGATTCGGCCATTCAGCATGTAGTGGGTGATGGAGGTCAGAGGGTCATCACCATAGTGACGGACCAACACGGCAACTTGCAGCCAGCGGGACTTGGGCAGCAGTTCTTTGTCACTATGCAGGGGCAGCAAATGGTGGCAGTCCCGACTGGTCAGATCACAGAGGAGGTGGTGGAACAGGAGCCTTATCCCTCTCCTGCACGCAAGAGGAGAATAGAGCCTGCAGCCATCCTAACCAGACCCAAAGACAAGAAAGCGAAGTCGGGGGACAGCAGTCGGGAGCAGCTCCAGAAGCAGTTGCAGGAGGCCAACCGGAAGGCCCAGGAGTACCGCACACAGCTCCTACAGAAGGAGCAGGAGGCTGAGCAGTACCGCCTCCGACTAGAGGAGGCCATAGAGCAACAACAGAGCAACAATACCAGCAATGCTACTGGTTCTACCTGCACAGGTGTCCAGGAGGCAGAAGAGGAGGTGGTCCAAATGGAAAAACAACACGAGACCGAGGAGAGAGTTGTGGAGGAGGACAaagtggaaggggaggaggacgTCCCATTTCCGGAAGACACCATTCTGGTTAAAGTGGAGGAGGAGCTGGATTCAGGGGAGGGAGAACAGATAACAGTGGATGATACAGAGGAAACGGAGAAGGCTTCAACTAAGGTCACAACGACCCCCAaacgggggagagggaggggacgagGACGTGGAAGGAGGCGGTAGTCAAGCGTCCCTCTGTTCTCTTGGTGTTCTCTCATGATATGTCTTGTTTTATGCATTTATATTAATATTAACGGTTATTACTTGTTTATTTTAGAACGATAACATTGTATTTGTAACTAGGTTTTGAGATTATTTTATTTACTTGCAATACTTTTGATGAAGAAGCCATTGGCGAGCACTTGTAAGCTAACGCTGAGCCCTGTAGGAGGAGTTAAGGATGCAGATGGCTCCACCGTGTACAAAAATGTCTGTGAATTTAGAGAAAGTAAGAAAAGTTATGTTTGCATAGGAGTGTAAATACTGCAATGTGGGTTTGATTGCACTGTGCATTCATTCTCCTAAGAATAAGGTTTGCAACACATTCTAATATAGGATATTCAATCCCCAgcatttctgtttcatgtcttcAGCGTCATGTTTAAAATAGAATCAAGTTAGCTCAAGTGTATAGTGCTAACTGAGAAAATGCATCTGATTCTTCAGAAAATGTTCTAAGGCTGGCTAAGTTCTAGTTATTTGCGTACctgtatgtgtgagtgtttgggcatCTGTGGGTGAGGTCGAGGTGTGGGATATCGGTGTTTCTTTGCTAGATGGCCAGCTTTCTTAAATCTGTCTTGAATATCCTATTCTAGTACTATTTTAGCTGCAGACCACTCAGACACTAAGATACTGTAGGTTTTCCTTTTTTGTTCCAAGTAGTGTTAGATTTTAGAGTTAATGTGTAAGTCACTGTTATTCTTAAGCTCTTATTTTTGTTCCTTTTGTCATTTTAAAGCATTATACTCTGTATAGACCAGCATCTGTCAATAGACATTGATCTGTCATCGCAGTCCAGTTTAAACTAATACTCTCAGAAAAATATTGTTTACATATGCTCTCTTTATGGCTGGTTAATTTGACACTAAGTGCTTCTTTATGAACATTATAAAAGCACAATCAGGGGTTATCTTTCAGTTGgttaggagaaaaaaaaaatacaattttgctACAAAATAATGTTAGTGAGAAAATATGGGAAATTGTTTTCTATGTTGAATACCCCTTTCTTAAATGTATTTTTAGAATTCAATAAATAAGCGTTTATTGTTATTCTATCCATGCA

Function

NR:

description
GA-binding protein subunit beta-1-like isoform X2

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593851.2 False 2680 mRNA 0.46 9 23369004 23374440
XM_021593845.2 False 2676 mRNA 0.46 9 23369005 23374440
XM_021593855.2 True 2648 mRNA 0.46 9 23369006 23374440

Neighbor

gene id symbol gene type direction distance location
LOC110514448 LOC106581016 coding upstream 26985 23306232 ~ 23342019 (+)
elp6 LOC106581052 coding upstream 62923 23302772 ~ 23306081 (+)
LOC110514420 LOC106581064 coding upstream 78008 23236262 ~ 23290996 (+)
smarcc1a LOC106605342 coding upstream 141436 23210418 ~ 23227568 (+)
LOC110514335 LOC106581155 coding upstream 235930 23119383 ~ 23133074 (+)
LOC110514513 LOC106580947 coding downstream 302922 23677362 ~ 23696446 (+)
LOC110514526 LOC106605333 coding downstream 328225 23702665 ~ 23708816 (+)
LOC110514561 NA coding downstream 338931 23713371 ~ 23718761 (+)
LOC110514613 hormad1 coding downstream 405960 23780400 ~ 23795199 (+)
LOC110514668 LOC106580869 coding downstream 445982 23820422 ~ 23832249 (+)
G236363 LOC100194703 non-coding upstream 58090 23310560 ~ 23310914 (+)
G236325 NA non-coding upstream 61320 23306855 ~ 23307684 (+)
G236359 NA non-coding upstream 71107 23297610 ~ 23297897 (+)
G236356 NA non-coding upstream 86737 23281412 ~ 23282267 (+)
G236330 NA non-coding upstream 134065 23234719 ~ 23234939 (+)
G236615 NA non-coding downstream 373989 23748429 ~ 23748663 (+)
G236616 NA non-coding downstream 374830 23749270 ~ 23749506 (+)
G236622 NA non-coding downstream 384133 23758573 ~ 23759384 (+)
G236372 LOC106581434 other upstream 18189 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 19626 23346880 ~ 23349378 (+)
G236301 NA other upstream 169929 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 188705 23144516 ~ 23191853 (+)
G235571 NA other upstream 670170 22672736 ~ 22698834 (+)
LOC110514733 LOC106580799 other downstream 534310 23908750 ~ 23932207 (+)
G236753 NA other downstream 680879 24055319 ~ 24055667 (+)
G238034 NA other downstream 1374965 24749405 ~ 24750383 (+)
G238047 NA other downstream 1391226 24765666 ~ 24766363 (+)

Expression


Co-expression Network