LOC110514513 (LOC106580947)


Basic Information

Item Value
gene id LOC110514513
gene name LOC106580947
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23677362 ~ 23696446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593874.2
TTTTAGGCCCTGCCACCCATTGACTTGACAGAGAAGTGTCTGAAGAGGGCCAGTGTCACGAGCAGGTGTTTGGCCAGTCAGAGCAGGGAGCAGCATTTTGGTGTTCGCTCCCACAGTTGGACCAGCGAATTACATACCACTGAGGGACTGCAGTAAAGCAGTTAAACTTGGCAGAAATCTGGAGGTTCCCAACCCCCTTAAGATGTACGGCCTGTACTTGGAAGCGGTGAATGATTATATCAACGAGTCGTACGGAGAGGATGTATGGAGGCTGATAGAGGCCCGGGCAGAGATACCGCATCTCAAGTTTGTCCGCCATCAGATGTACAATGACAACCTGATCCTGCGGCTGGCCAAGGCAGCAGGCGAGGTCCTGGGGAAGACCCATGATGAGCTCATGTATGCCTTCGGGGTTTACATGGTGAAGAGGATCGGGAACTACGGCTACGAGAGGATTCTCAAGGTGTTGGGGCGTAATGTGCGTGACTTCATCAATGAGCTGGACAACCTGCACGAGTACTTTCGCTTCTCCTTCCCCAAGGTGCAGCCTCCCAGCTTCTGTGTGGAGGAGGAGTGTGAGACCAGCCTCACCCTGCACTACCGCAGCACCCGCAAGGGCTTCACCCAGTTTGTCAAAGGCCAGCTGTCTCAAGTGGGAAGGCAGTTCTACAACACAGACATTGAAGTTGAGATCCTGTCCAaagaggagactgaaaagatgacATATGTGATCTACAAGATGAACTTTGACAACGCTGCCTTCAAGCACCGCATGCCCCAGCAGAAGACGGCCCCGGGGTACGAGAAGCTACCCATGAAGAGGGGCATCTTTTTCGACATGTTTCCCTTTAGCGTGATCTTCCGCCGGGACATGACCATGTACCGCATCGGGGACGGTCTAAAGGAGGTTTTCTCCGACCTGCAGGGCAAGAAGGTCAACGAAGAGTTCACCCTGGTGCGGCCCATGCTGGAGTTCAGCTGGGACAACATCTACACCCACCTTAACAATGTGTTTGAGCTACTGTCCAAAGCTGTGGTGGAGAGCAAGCAGAAGGTGAATGTCCCTAAACTGAGCAAGGAAAAGGAAGACGAGGGAAAAGAGGAGAGCGAGAAAcccaagagagaggaagagagaagtaCAGAGAAGTCAAGGGTCCGCCCGTCGCCACAGTCAACCGACAGGAGAGATGTGAAGTCTGTGGAGGAGATGAAGGGGGACCAGGAGTTCAGCAGTGCTCTGACTCAGTACAACAGCTCAGCCAACTCAGGGGGAGAGGACATCGAGCTGCTTGCCTTCCAGACTGTCACCGGAAAGTGCAGTGAAACTATCTTTGAGGATATGAGGGAACCTCCCAAGAAGCCCCTCCACCTGAAGGGTCAAATGAAGTACGTCCCCCAGTGGGACTCGCTCATCTTCCTCAGTACACCCATTATAGAGACAGTGGAGGACATGATTAAAATGGGCGTCTATGTGAATGATCTGAACCTCCATGACTCCAGCCGAGAGCTCATCTTAGCCGGAACACAGCAGTCGGCTGAACTTCAGCTGGCTCTTGACCAGGAGCAGCAGAAGTACGCCCAGCTCCAGGAGATCATCAAGAAGCTTgacgaggagaagaagagaggagactcCCTCCTCTACGCCATGATCCCCAAAGCTGTGGCTGACCGGCTCAGGAAGGGTATCACGGCCCTGGAGACATGCCAGGTGTTCCCGGACGTGACCATCCTATTCAGTGACGTGGTGAAGTTCAACGAGATCTGCATCCACATCACGCCCATGCAGGTGGTGGACATGCTCAACGAGATCTACATCGTCTTCGACACGCTCAGCGAGAAGCACAACGTCTACAAGGTGGAGACCATCCGAGATGCCTACATGGTGGTGGCAGGCGTGCCCAATAAGACAACCTTCCATGCCCACCACATATGTGACATGGCCCTGGACATGCTGAGCTCCATCGACCACCTCAAAGACCCCTCCACTGGAGACAACATCCAGATCAGAGTCGGGATCCATTCAGGGATGGTGGTGGCTGGGGTGGTGGGGCTGAAGATGCCTCGCTACTGTCTGTTTGGAGACACCGTCAACACTGCCTCCCGCATGGAGAGCAACGGGGTGGGCATGCAGATCCACATAAGCCAGACCACCAAAGACCACTTGGAACATGAGCCCTACATaattgaggagaggggaaagatcTTTGTGAAGGGTAAAGGCTACATGAAGACATATTGGCTGAAGGGGAAGAAAGACCTGTCGTTTAAGACTCCAGCAGAGCTCCGCTACAGCAGTGAACAGAAGGACTCAGAGGACAGGAGCTCCAATGGGTCCACCTGCACCAACACCAAGCGCTCCACCTCCAACCTGAACATTCCCAACGAGGAGCAGGCAGAGGGCAAGCCCACCCCCACAGAGCTGCCTGCAGAGCCCTTACCTTCACTAGAGGGCGCCCCCGAAGACTCTACAGACCCCACCGAGCCACAGGAGAAGAAAGTCAAAAAGAACActaagaacaacaacaaaggggGCGCGGCCAAGCCCGAAGCTCCTCCGCAGCAGGTCAATGTGGTGCAGGAGAGTGCAGTGCCTCCTGCTGCTGCCCAGGAGACCCCCACAGCCCCCCCGGCCACCACCGCCCCAGTGCTCAACAACAAGAGGAACAGCTTCAGGCAGCATACCAAGCTGCCCGCCCACCTTCCCATGCGCAGCACTTCCTGTTGCCTACTGTGAGAGGAGAGGctaaaataatgtgactggcctGCATCTTATTGACAGTCCTGTGAAGACAAACCCTGAAACTGACCCTAACCTTGAACCTTAACCAATTAGAAAATTCAACATGGTTTCGCTGGTCAGTCACATCCCTTTTGTTTTTCCCTACTGTGAGATGGACCAGGCCAGAGTTCAAGACTTCTCATCTCAGATTATTGGCCAGCCTTCCTGTTCAATATATTGTATGACGCCCTGTTGTTTATCCTATGTTTTTCCTTAGGCAGGACCTGAGTCAGCAACATTCAGGGCAGCCCACACCTAATGTAATGTATTCATCCATTTATTCAAGGCGGACCACCCCACTTAAGTATTAATAGAGGAAACATTGATGcccttaaaataaaaaaaatgacattgctgatttttttttttatcttccaACAAATATATACCGATTCTCATGTCAAACAGTGGGCCTCTTTTGGTAATACAAGCACCTGGCTAATGTCACAGATTTGTGCATGTTGTTGAAAGGACATGTCAATAAATGTACAGTTCAGTTTATTACTGTCGGTGAAAACAAACATTACAGGATCACAATGGATTGGTATACAGAGTAAGATGAGATGTCAAGAGATGGTTGTATTTTATTTGCATAAACTAGTTCTGAGAAGTCTGACCCAAGTTACAGTTCTTATACTGTGTTTAATGATGGAATAATATTGACTTTAATATTAATTTATATAATAGCGCTTTTCCTAATGCTGTAAGTGCTTTActttttctgttttgtatttgtaaTTTGTTGCACGCTTACTGAATGTTAGCATATCTTTGTCCATAAAAACTGTACAGACAAACAC
>TU270351
TGAGGACAGGCTGCACGAAAATTACGATTATGTTACGGGTGTGCAGTGCACATTTGGAGCGAAGTTGCTTTATCAATTGTGGAGAACATTCGATTGGTCTTGCCAGGAAGCTAATCCTAAAGACGGATGCAATACCATCATTGACCTTGGAACAGTGGATCTTGCAAGCGCTGACCATAACCTTCCCAGGCAACCACCACAGCAGGAATGCTGTGAAACATGTGAAGACAGACCAAAAATACTATCTACACCCACCTTAACAATGTGTTTGAGCTACTGTCCAAAGCTGTGGTGGAGAGCAAGCAGAAGGTGAATGTCCCTAAACTGAGCAAGGAAA

Function

NR:

description
PREDICTED: soluble guanylate cyclase 88E-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593874.2 False 3579 mRNA 0.50 17 23677362 23696446
TU270351 True 337 lncRNA 0.36 3 23681519 23685244

Neighbor

gene id symbol gene type direction distance location
LOC110514472 LOC106581037 coding upstream 302922 23369004 ~ 23374440 (+)
LOC110514448 LOC106581016 coding upstream 335343 23306232 ~ 23342019 (+)
elp6 LOC106581052 coding upstream 371281 23302772 ~ 23306081 (+)
LOC110514420 LOC106581064 coding upstream 386366 23236262 ~ 23290996 (+)
smarcc1a LOC106605342 coding upstream 449794 23210418 ~ 23227568 (+)
LOC110514526 LOC106605333 coding downstream 6219 23702665 ~ 23708816 (+)
LOC110514561 NA coding downstream 16925 23713371 ~ 23718761 (+)
LOC110514613 hormad1 coding downstream 83954 23780400 ~ 23795199 (+)
LOC110514668 LOC106580869 coding downstream 123976 23820422 ~ 23832249 (+)
LOC110514708 LOC106580852 coding downstream 170821 23867267 ~ 23886989 (+)
G236363 LOC100194703 non-coding upstream 366448 23310560 ~ 23310914 (+)
G236325 NA non-coding upstream 369678 23306855 ~ 23307684 (+)
G236359 NA non-coding upstream 379465 23297610 ~ 23297897 (+)
G236356 NA non-coding upstream 395095 23281412 ~ 23282267 (+)
G236330 NA non-coding upstream 442423 23234719 ~ 23234939 (+)
G236615 NA non-coding downstream 51983 23748429 ~ 23748663 (+)
G236616 NA non-coding downstream 52824 23749270 ~ 23749506 (+)
G236622 NA non-coding downstream 62127 23758573 ~ 23759384 (+)
G236623 NA non-coding downstream 65533 23761979 ~ 23762351 (+)
G236372 LOC106581434 other upstream 326547 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 327984 23346880 ~ 23349378 (+)
G236301 NA other upstream 478287 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 497063 23144516 ~ 23191853 (+)
G235569 NA other upstream 996634 22673525 ~ 22685509 (+)
LOC110514733 LOC106580799 other downstream 212304 23908750 ~ 23932207 (+)
G236753 NA other downstream 358873 24055319 ~ 24055667 (+)
G238034 NA other downstream 1052959 24749405 ~ 24750383 (+)
G238047 NA other downstream 1069220 24765666 ~ 24766363 (+)
G235571 NA other upstream 982685 22672736 ~ 22698834 (+)

Expression


Co-expression Network