LOC110514526 (LOC106605333)


Basic Information

Item Value
gene id LOC110514526
gene name LOC106605333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23702665 ~ 23708816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593880.2
GGGTTTTCACTTGTCAGGACAAGCAGAGGCCCACTGtcagcagatagagagagagaggggaacatagTGGATGAGTGAGAGAAACAAAAAGAAACAGGGAGACTGATAAAGTATGAAGAGGGatgaaagcaagagagagatactgtagtttGAAGTTGAAGTTTTCATTTGAATTTTATAAGGAAAtacaagagagagaaggagagagatagaaacactaAGGGGTGTGTCATAGCAATTTAGTTCCTCAAGGAAGTACAACTGACATTTATCTTGAGATGGTGGCGAGCAGCACAGATAGACGCGACACAGAGGGATTTTCTTTTATTTTCACCTGATAAGATGAAGGGATTCCATTAACGAGTGCTCAATGCTGACAACCTGAGCCACGTGCCGTGGGGACTGAGACGTTTGACACGAAGGAGGGAGgggactctctcacacacacagGTAAGGATGGAGTCATTCAGCTCCAAGGATATGGCCATGCAGGCCCAGAAGAAGATCCTCAGCCACATGGCCAACAAGTCTGTGGTCCATATGTTCATAGACGACACCAGCAGTGAGATTCTGGATGAGCTCTACCGTGTTTCCAAAGAGTATTCAGGCAACCGCTCAGAGGCCCAGAAGGTGGTGAAGGACCTGATCAAGATAGCAGTGAAGATTGGCGTGCTGTTCAGACACAACCGTTTCAGCCCAGAGGAGCTGAGTCTGGCCCAGGACTTCAAGAAGAAGCTACATCAAGGAGCCATGACAGCCATCAGCTTCTATGAGGTGGAGTTCACCTTTGACAAGACAGTAATGTCGGAGATCCTGACAGGTTGCAGAGATCTGTTGTTGAAGCTAGTCGACTCCCACCTCACGCACAAATCCCATGGTCGCATCAACCACGTATTCAACCATTACTCCGATCCAGAGCTTCTGACCCAGCTGTACAACCCTGATGGATCCTTTAAACCCAACCTCACCAAAATCTGCACCGGCCTCAACCGTCTGCTGGAGGAGGGGACATTATGAGAGTGTGAGCAAGTCTATGATTGTGAGAGAGACACTGGGAGATCTGCTTGAAGGGGTCTGCTTAGAACTCAAGAGAGGACTGTGTGTAAGGACAGGAAGTGTCCATGCTCTAAATGAGAACTGGCGAGATTTGTGACCCAAGTTTTACTTGATGTAGTCACTCACTGATCTATTATTTTCCAAAAAGGGTACTGCCCAAAGTGAAAGAATATGAGAATATGCAGGATGATGTATAGTTAATGTCTCCTGATGAATTGTGTCTCCATGAATGGAGTTGCTGGAAAGTCAGGATTAGGTTAAGATTGTGTCAACCACCTGATTTTATACAGTGGAATTTCCGTCCAAGGTTTCACATACTCATTTACTATTCTAGTTTTTCTGTAGTTTTTTCTCTCTTGCTCGCCATATTATGTACTGTATAGGGAAAGATAAGTCTCAAGGACTGCACAATACTGACTGACAGAATGAAAACAAGGGTTAAAAGCAAGCGGTGAAATATTAGAATAGAGTACTACCATCTAGTGGTCTAGCTGGCAATGACTCAGTACTGCATGTATCGAAGAAAATATAAAAGCTTATGGAGAAAACAGTGCACATTTATTGTGGAGATACAAGAGAGTAATTTCATAAGGCCCAAAGAGAAACTGGATTGGAATATTTAAAAATAATTTGGGCCTTGTAAATCATAGGATTGGAAAAAAATAAATGGCTTGTAAATTAGTGCCTTTTTTATTGTCCATTTGTGAATATATTGACTTCACATCTTTAGTTAATGTTATTAAATGTACAATGCTATTAAATGTACAATATGTGCAATTTATCAATAAATTGACAGCAAtgtgtgtacatacagtaccagtaaaa

Function

NR:

description
tumor necrosis factor alpha-induced protein 8-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593880.2 True 1881 mRNA 0.42 3 23702665 23708816

Neighbor

gene id symbol gene type direction distance location
LOC110514513 LOC106580947 coding upstream 6219 23677362 ~ 23696446 (+)
LOC110514472 LOC106581037 coding upstream 328225 23369004 ~ 23374440 (+)
LOC110514448 LOC106581016 coding upstream 360646 23306232 ~ 23342019 (+)
elp6 LOC106581052 coding upstream 396584 23302772 ~ 23306081 (+)
LOC110514420 LOC106581064 coding upstream 411669 23236262 ~ 23290996 (+)
LOC110514561 NA coding downstream 4555 23713371 ~ 23718761 (+)
LOC110514613 hormad1 coding downstream 71584 23780400 ~ 23795199 (+)
LOC110514668 LOC106580869 coding downstream 111606 23820422 ~ 23832249 (+)
LOC110514708 LOC106580852 coding downstream 158451 23867267 ~ 23886989 (+)
LOC110514755 LOC106580807 coding downstream 183069 23891885 ~ 23907345 (+)
G236363 LOC100194703 non-coding upstream 391751 23310560 ~ 23310914 (+)
G236325 NA non-coding upstream 394981 23306855 ~ 23307684 (+)
G236359 NA non-coding upstream 404768 23297610 ~ 23297897 (+)
G236356 NA non-coding upstream 420398 23281412 ~ 23282267 (+)
G236615 NA non-coding downstream 39613 23748429 ~ 23748663 (+)
G236616 NA non-coding downstream 40454 23749270 ~ 23749506 (+)
G236622 NA non-coding downstream 49757 23758573 ~ 23759384 (+)
G236623 NA non-coding downstream 53163 23761979 ~ 23762351 (+)
G236372 LOC106581434 other upstream 351850 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 353287 23346880 ~ 23349378 (+)
G236301 NA other upstream 503590 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 522366 23144516 ~ 23191853 (+)
G235569 NA other upstream 1021937 22673525 ~ 22685509 (+)
LOC110514733 LOC106580799 other downstream 199934 23908750 ~ 23932207 (+)
G236753 NA other downstream 346503 24055319 ~ 24055667 (+)
G238034 NA other downstream 1040589 24749405 ~ 24750383 (+)
G238047 NA other downstream 1056850 24765666 ~ 24766363 (+)

Expression


Co-expression Network