LOC110514548 (LOC106580919)


Basic Information

Item Value
gene id LOC110514548
gene name LOC106580919
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23710004 ~ 23713322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593895.2
AGCCATGGAAACAGACAGCTGACTGAATACTAGCTAGCTATTCCAAACATCTTCAAAACCGTTTGTAATCTAGCTACTTCCTGCTTTCAGTGAGGAATTGTGGGACTTGGTCATACCACGGCAGCCATGGAAACAGACAGCTGACTGAATACATTTTTCCTATGGCAAGATTTTGTTTAgaagctaactaactagctagttgACGAGATAAGGTAAACTAGCTACATGCACTTAAACTCATGTTATTATTAGCTAGCTACCACCTCCCTACAATAACGACGATACAGGTTTTCTAACTGTATaggcaatttagctagctggcAAACTATAGTAACTACTATAGCCAGTAACGTAAACTGGTTtacgctagctaacgttattgcTAACTTAGCAAGTTAGGGGGGCTAGATAAGCTCAACCATGTTCCACGGGGAACGGGCTCCTCTTTCAACGGGTGGAGCCGGTCCACTCCCCGTTAACCGCACGAGGTCATACGGCAGTCTTGTACAATCCAACCTTTCTCCGGTACGACAAAGACGAATTGAACACCAAGTTCAGCCAGGAGAGACGTTGCAAGGACTCGCGTTGAAATATGGAGTATCTATGGAACAAATCAAAAGAGCAAATAGACTGTACACGAATGACTCAATATTCCTAAAGAAGTATCTTTCTATCCCTGTGCTGTCAGACTACAACAGTGATGCTAATATTGGGGTAGATGTGACTGAGGAGGACTCAGGCAAGGTAAAGGACAGTATAAGTAAAAACGTCTCTACTCAAAATGGGAAGCCAGTGAACAATTCTGAAAAGACACAAGAAGAAGGTACATCAGAACTTTCTCCAATGAATTTCTTGAAAAGGATGGATCATATGATCAGCCAGACCAAGCAAGCAGCTGTGAAAAGATgccaagagggagagaaaagTTTGACATCTTTGGAAGCAGCTTGTACCAGCAAGACAACAGACCGTCGATTTACAAGGTCAAACAGTGCCACGGTCGTCACCTCTCCCAGAATGCATCAGCAAGCCATACTTGGTGCAGTGCCCCTCACCATCACCAAATGCACCAATAAActgtgagaaagagaggatgagaTCTTTGAGTTGTGATTTCATTGCCTCTGTCAGGCAGATCATGGGACACGTGGTACTAATACAAAAATCAAAGGGATAGACGTCCATGCTAATCTGGCATTACAGATTTAGGAGAGTTCTTATTTTCACTGATGAGTAATTTGCTGCTCTATGGACTTGGTAGTTGAAAGTTGGTAGTTAGCACTGTTGATATAATTGTTTTGCTGATAGCGTGAGTTTCATTTTGACATAAGAATACTTCTTATTAGGCAAGTAATTAACTACTACCAAGTTATTTAAAGTTTTAGTACATAGATTAAATATTATATATTTGCCATGTCCAGAACAGCACTGTCTGGTTGTATGTTTACTACACAAAATGAGAGTCAGAATGTGGTACTTTGACTTGTGTTTATATGTTAGTGTGATCATGTAACTATCCAAGTTATGCTTGGCCACAGGCGCTAGATCATTTGTGTTATGCTACCTTGTAGTGTCTTATGTATGCAATGTCAGAAATGTGAAAAAAATGCAAGTCTTGGAGAACAATAGAAGTTGACtctgaaaaatgtatttattattgaaACCAATGTGAGTTGGTATAGCCTAGTCTTCATTGGGTGTTTGTTACAATTATGCAATAATGTACATATTTATTTTTAGAAGAATACTGAGCACTGCACTTTCATTTTCTAATCCTGGCACTAGGTTGTAGTAAGTGGTAAGGTTGCCTTGGTATTTCATTTAATTTTGCCAACCAACTGTATTGTTACAGTACTGAATTGGCTATACTCAATCAAAGTGAGGAACTTGTTGTTTCTCCTTGCTATTTCAACGAAAGACAAAACGATATTCCTCTGGTATGGTTTCCTTTTTGTTTCACACTGTAAACTTTTCTGCTGTTTAAATAAATCCAGAGGTGTAGTTTCgaagtaaaatatatatttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593895.2 True 2026 mRNA 0.39 3 23710004 23713322

Neighbor

gene id symbol gene type direction distance location
LOC110514498 LOC106580978 coding downstream 146513 23406253 ~ 23563491 (-)
LOC110503934 LOC106581009 coding downstream 341113 23342123 ~ 23368891 (-)
LOC110514368 LOC106581124 coding downstream 513661 23172610 ~ 23196343 (-)
LOC110514348 LOC106581121 coding downstream 545620 23144516 ~ 23164384 (-)
LOC118944658 LOC100136303 coding downstream 567038 23140834 ~ 23142966 (-)
LOC110514538 tmod4 coding upstream 6067 23719389 ~ 23729898 (-)
LOC110514588 LOC106580904 coding upstream 54777 23768099 ~ 23770876 (-)
LOC110514600 ensa coding upstream 58189 23771511 ~ 23780158 (-)
LOC100136261 cats coding upstream 119080 23832402 ~ 23840512 (-)
LOC110514697 LOC106580864 coding upstream 128019 23841341 ~ 23849924 (-)
G237366 LOC106580947 non-coding downstream 23274 23685154 ~ 23686730 (-)
G237162 NA non-coding downstream 323601 23379046 ~ 23386403 (-)
G237114 NA non-coding downstream 415681 23294120 ~ 23294323 (-)
G237086 NA non-coding downstream 419022 23289532 ~ 23290982 (-)
G237108 NA non-coding downstream 429814 23266069 ~ 23280190 (-)
G237396 NA non-coding upstream 36232 23749554 ~ 23749821 (-)
G237457 NA non-coding upstream 153950 23867272 ~ 23867534 (-)
G237462 NA non-coding upstream 158348 23871670 ~ 23871871 (-)
G237463 NA non-coding upstream 158939 23872261 ~ 23872770 (-)
G237464 NA non-coding upstream 159994 23873316 ~ 23873537 (-)
G237047 NA other downstream 520973 23157109 ~ 23189031 (-)
G235881 NA other downstream 1135015 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1954503 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1966593 21738845 ~ 21743411 (-)
G234621 NA other downstream 2211172 21498408 ~ 21498832 (-)
G237657 LOC106605316 other upstream 467234 24180556 ~ 24183964 (-)
G237832 NA other upstream 807897 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1056240 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1223194 24936516 ~ 25052970 (-)

Expression


Co-expression Network