LOC110514538 (tmod4)


Basic Information

Item Value
gene id LOC110514538
gene name tmod4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23719389 ~ 23729898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593886.2
gtggaggggagaggggtatAGAAAAAAGAAAACCGGTGGGAGGGGATAGAAAAAAGAGAACCACCATTCTCAGGTTCCAACAGCAGGCTTTGCCTTGTAGAGGGCTCCAGCACTGCAACTCTGTGAAGACAGTGCCCTGCTCTACCCCaggggtgtgtggtgtgtttgtgaccCTAGCTAGGAGCCCAGCCAGCCTGCAGACATGTCGAAAAGCGACCCCCGGGACATCGACGAGGATGCCATCCTCAAAGGGATGAGCCCTGAGGAGATAGAGGCGCTAGAGTGTGAGCTGCTGGAGATGGACCCCGAGAATGCCATCCTGCCAGCCGGGTACCGCCAGCGTGACCAGACCAAGAAGAGCCCAACGGGGGCGTTTGACCGTGACGCCCTGCTGGATCACTTAGAGAAAACAGCTCTGGAGCACGAGGACAGAGACGACCTGGTGCCCTTTACTGGCGAGAAGAAAGGGAGAGCATTTGTTCCTAAGGAGGGCCATGGAAAGATCCCCGACCATGAGCAGATCACCCTGGAGCCTGAGCTGGAGGAGGCTCTGAAGAATGCCACAGACGCTGAGATGTGTGACATCGCAGCTATTCTGGGAATGTACACACTGATGAGCAACAAGCAGTACTATGACGCCTTGGGCACCACTGGTACCATCGCCAACACAGAGGGCATCAACAGTGTAGTAAAACCAGATGCATTCAAGATCTTCCCAGACGAGCCCCCCAACCCCACAAACGTGGAGGAAACCCTTCAGCTGATCCAGAAAAACGACAGCAGCCTGTTTGATGTCAACCTCAACAACATCAAGgaCGTTCCCATCCCAACACTGAAAGAGATCTTTGAGGCGATGAAGGGCAACACCCACGTGGAGTATCTGAGCATTGCCGCTACCCGTAGCAACGACCCCGTGGCCTATGCTGTCGCTGAGATGCTCCAGGAGAACACCACTCTGCAGAGTCTTAACATCGAGTCCAACTTCATCACCTGCGAGGGCATGAATGCCATCGTCAAGGCCTTGGCCAACAACACCACACTGACCGAGATCAAGATCGACAACCAGAGACAGAAACTGGGGGACTCCTGTGAGATGGAGATTGCCACCATGTTGGAGAACAACTCCAGCATCGTAAAGATCGGCTACCACTTCACCCAGCAGGGGCCTCGGGCTAGAGCAGCCATCGCCATCACCAGGAACAACGACATAATTCGTCAACAGAGAGTAAGATGAGACGAGAGTGGAGCAACAAGTTAGGCTCACGTCTTGAGAGCACAATCAACTCAGCCCCTTGGACCTAACAACTCTAAAAACGGCCATTGACAGCTTTGCGCTAGCTTTGTCAATGGGGCGCAACTAGCCTTTACAACCCCTCTGTGCCTCGTCACAAGTCCGGGTGTTCATTTCGATTTCTGTGTCCAAGCATTTTGTTTACCACAGCTTTTTGTAGACCATTGAATTCATCATAAAAGAATACATAGGTCACATCGTTGTAAAGTGTCATTTATGCTTCTAGAGTACGCCATGATAATACTCAGAAAATGGAGGTGATAAAACTCCTACATGGTAGTGGTGCTATATCTAGGAAAATAATATCTGTAAATACTTTTAATAAACGTTGAAATAATTCATTGTTTTAA

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

NR:

description
tropomodulin-4-like

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593886.2 True 1641 mRNA 0.51 10 23719389 23729898

Neighbor

gene id symbol gene type direction distance location
LOC110514548 LOC106580919 coding downstream 6067 23710004 ~ 23713322 (-)
LOC110514498 LOC106580978 coding downstream 155898 23406253 ~ 23563491 (-)
LOC110503934 LOC106581009 coding downstream 350498 23342123 ~ 23368891 (-)
LOC110514368 LOC106581124 coding downstream 523046 23172610 ~ 23196343 (-)
LOC110514348 LOC106581121 coding downstream 555005 23144516 ~ 23164384 (-)
LOC110514588 LOC106580904 coding upstream 38201 23768099 ~ 23770876 (-)
LOC110514600 ensa coding upstream 41613 23771511 ~ 23780158 (-)
LOC100136261 cats coding upstream 102504 23832402 ~ 23840512 (-)
LOC110514697 LOC106580864 coding upstream 111443 23841341 ~ 23849924 (-)
LOC110514815 LOC106580773 coding upstream 245976 23975874 ~ 23980300 (-)
G237366 LOC106580947 non-coding downstream 32659 23685154 ~ 23686730 (-)
G237162 NA non-coding downstream 332986 23379046 ~ 23386403 (-)
G237114 NA non-coding downstream 425066 23294120 ~ 23294323 (-)
G237086 NA non-coding downstream 428407 23289532 ~ 23290982 (-)
G237108 NA non-coding downstream 439199 23266069 ~ 23280190 (-)
G237396 NA non-coding upstream 19656 23749554 ~ 23749821 (-)
G237457 NA non-coding upstream 137374 23867272 ~ 23867534 (-)
G237462 NA non-coding upstream 141772 23871670 ~ 23871871 (-)
G237463 NA non-coding upstream 142363 23872261 ~ 23872770 (-)
G237464 NA non-coding upstream 143418 23873316 ~ 23873537 (-)
G237047 NA other downstream 530358 23157109 ~ 23189031 (-)
G235881 NA other downstream 1144400 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1963888 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1975978 21738845 ~ 21743411 (-)
G234621 NA other downstream 2220557 21498408 ~ 21498832 (-)
G237657 LOC106605316 other upstream 450658 24180556 ~ 24183964 (-)
G237832 NA other upstream 791321 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1039664 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1206618 24936516 ~ 25052970 (-)

Expression


Co-expression Network