LOC110514668 (LOC106580869)


Basic Information

Item Value
gene id LOC110514668
gene name LOC106580869
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23820422 ~ 23832249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593955.2
gaAAGAGTTGGTGGGGCTGAAATCGATGAAGTAGCAGgctgagggaagaggaggaggaaaatctCACGAGATAATGAAAGAAAAAGAGGAGAGCTGCTAGGTAGAGAAGAGCAAGGCTACATATGGACGTTTGACTTTAAAAAAGACCAAAAGGACAGGGAAAGGACGTATACCTAACCGCCAATTGTTTGGCCTCTGTTTTATTGTATGTAGCATCCCTCGGTGCATCTGACCAATTGTGTGAATCTGCGCGGACAGGCTGGAAGACAAGAGACAAGCGACACAATCGGAGAGATGCAGAGGACCGACAACAGACGCGGATGCGCTCATATAACAGAATAAGGCAAAAGAGCGACGATTCTGCGGTGGAACACAGTTGAAGCCCAAAGAAAGGATAAGAAGAGTGTTGTAGCACAAATCCAAATAATGTGATAGTTAATCTTACTGACGCTGCTTCACACTTGATTTCCTGGAGTTTGAAGGAGTTTAAAGAGATTACTTAAGTTGTTATCAGATAATTAATTGGACAGTATAGAAGCACATAAATCAATCCATTCAGAAATCAATAAATCCATAGTATTGTGCAACAGGAGAAGGGCCATCCAGACTGTTAGTCTACTGTTAAACAACAACTAGGCTACTGAAACAACACCATAAAGATAGAAAAAAAGGGAAATTCactaaattcaaaatggatggaAGTCTAGGGGAGATGTCTGTCCAAATCCACTCTGAGCTCCATAGTCAGGATGGCAGAGCGATGCTGCATTCACGGGACCTTTCAGCTGCTTTCCCCAGGCCCTCCCTTGGGGGGCACTCCATGTCCCTGGAGCCTGAGCACCGACCTCCAGGTTTCGACCACTCCATGTCAGCACTGGGCTATGGAGGAGATGCTCCATCTAGCTGTGGCAGCACGTACACCACACTAACCCCCCTGCAGCCTTTTGATGACAAAtttcaccaccaccatcaccaccaccatccctGCCTGCCGGTCAGCAATGTCATCGGGAGCTTTACTCTCATGCGCGAGGACAGAGGCCTGGGTGGCAACTTCTACAACCCTTACGGCAAAGATCTGGGGATGACACAGAACCTTTCACCACCTTCTACAGGCTCTGGCTTGGGGACACCCATGCATGGTTACGGGACACTGGGAAACAGCCCCAACGGCAATGGTGGCCAGATGCTTCCAAGTGGTTACGAGGTCCACGGGGGCAACATCTTCTGCAGGACGGCAGACTTCGGCAGGGAGATGTCCCCTCCAGGGCTGGGCGGCGACTCGTCAGTCAGCCATCAGCTGAACAAGATGGAGGCTCACCAACACGCGCCCAGCCACCATCCTCACATCTACAGTCagcactaccaacaccaccaccccagcCAACAGTCCTCAAAGGCCGGGGAGCTCCCCCACTCCTCGTCCTCTTTGCCCAGCAGTGAGGGCATGCTGCCCAGCTCCcagggtggtggaggtggaggggctgGAGAGGAGATCGACACCAGGGACGTGGCCCAGAGGATCATCACTGAGCTGAAGAGGTACAGCATTCCCCAGGCCATCTTTGCAGAGAGGGTGCTGTGTAGGTCACAGGGCACTCTGTCTGACCTCCTGAGAAACCCCAAGCCCTGGGGCAAGCTCAAGTCTGGCCGCGAGACCTTCAAGAGGATGTCCCGCTGGCTGCAGGAGCCCGAGTTTCAAAGGATGGCCTCACTGCGTCTGGAGGCTTGCAAGcggaaggaggaggagcagagtaaACTGGAGCGCAACCAGGGTCCCAAGCGCACCAGACTGGTGTTCACGGACCTCCAGAGGCGTACCCTATTGGCCATCTTCCGGGAGAACCACCGGCCAGCCAAGGACCTCCAGGTCACCATCTCCCAGCAGCTGGGCCTGGAGCTCTCCACTGTCAGCAACTTCTTCATGAACGCCAGGCGCCGCAATGTCAACAAGTGGGCGGAAGAGGGCCGCCCCTCCTCCACAGGCTCCTCGGGCTCCAGCGTGTCCTCCTCCGCCGTGTCCTGCAGCACGGCCTGATGGAATAGAGGTGGGCTGGGTGGGCGTCGTGGCAGCAGAGGGCACATAGGCTGGTCTAGGTAGAGATCAGGCGTAATAATGTACTCCTCATTAtcagagggagtgatggagttgGCGTAGTTTAGTTTTTTATGAAGAATTATCACAGAGCATTTCAGACCAAAGTTGATCTCTCCTTGATATTGAAGCGGTGATACCCAGAATAATATGAGCACTTGTATGAGACAAGTTCCTATAATTTGAATGGTCGTGGGTGAATAGTTTATTTGAATTTTAAGAGGGTAACAGTGAGCATCCTTGATTTCTATAATTTTATCACATTCAATTTTAATATGATAGgttatgaaatcaaatcaaatttcatttgCCACATGCTTtgttaacaacaggtgtagactaacagtgaaatgcttacttacgggtccttttccaacaatccaGAGTTAAAAGAtgaaaagttattttttttaataaaaaaaatggcaCAAGGAATAGTATGGTTATGAGGTTATTAATAATCAGGAGGAGCCATACTTTTGTTTGCCCTTAGGGCTAATTTCATCTCCCTTACTAGAAACAGAAATCAAGAGGCATCGCTGCGTTGCATAACACCCCTAATTCAAATTTTCACCACCCGTTACATCGACAGATCTCCATCATATGTCCTTTGTTTCTCTGAGGAGTCAAGATGAAGGTCACAGAGAATAACATGGGGATTGTGACAAAATCAGAGCTCCATCACGTTTTCTAAAGAATGCGGCATGTGTTCCCATATAACATGGTTCGCAGGACTGCAGAACTCTCTGGATGATCAGGAGGTTATTTCTCACTCCACGATTCTCAGTTTTCGATCATTACCTGTCACGAGAACCTTGACTTGTCTTTTACACTTCTTGACAACGGTACCAGCTTGAATGAATCACAGTTTTCAAGGAGCAACCTTGGTGTGTCTCATTTTAAATCGGGACagaatctgtaaacaagggcagaATTTCAAGGGATGCCAAGTCAGAGACGTTTTGATGCAACCCTCCAGCTTTAAGACATTGACTGACCTACCAAACAAACGCTCTGTAGCCATTTTGACTCAACCAAAACACTTTGAACACGACGGTCGCAAAGGAAGAAGTACTTGTAACACAatgtatagtagtagtgtagtattttTTCCACTCATGTTTCAAAACACTTAACTGAACAAACCTCGGCTCCATtgcaaatctttttttttttttttttacagacgcCTAGAAAATGGAGGAATGTGATTCTTTTAGCCCTTTTGTACAGATTTCAAGCACATTGCTCTATTTATAGAAATCCAATGGAAGTATGAGTTGTTGTTGTTCCAGTCCTGCTACGTACACCAAGGTCATTTTAGTTCCTCGAGGAACGGTTTTAACATGCCTCTTTATAACCAGTTTCATTGGAGCAAGAATTTAAAATGCCATTGCTGAACTGATCAATGTATTTATTACTGCATTTGTGTATTtattgtttttcttttgttttctcTCTATTTATTTGGTTATTTATTTATGCTATCTATATACTGTAAGTATTTATTTAATAATGCTTTGTATGTCTGTGTGAAACTGACTTTTTTTTCTGATGGGCACTTTTAGTTGTAGAATCCCATCGTAATACCAAAGATTAAGATTGTCCTCCCTGAATGTATGGCCTaaacccctttcctctccccctcgaCTCCCAGTGATGTTACGTATCTCTCTCTTTAAGGCCTTTTTTTTATAGAATAATGGGGATTTCTTTACTATTGGCAAATGTCTCTGTGGTCAGGTCTTATGCCGAGGCTAAGCTTGTTTGAATGTTGTGGTAATGTGACATCTCATAGGCTCACAGGTTGCTTGTAAAATTGTGTTCAAACATCATTCGGCAGAGTGTCTGGAGTGTCCAGGGTTGCACTTACAGAGCATTTCAGGCTCTTAAGTGTGAATCCTTTGAGACCCCATGGAAACATGCATGCTGTGCATCTTCCTGGGGTTTGCATAGCAGGGACTCCCCTTGCTGCATTTCACACACTCCTGTCTATGTCCTGCTCAATGTGATTTCACCATCCTCCAGACTCATCCCTTCTGCCAGTCTTCTCAGTTCCACAGGCTCCTCTAGCATTTTCTCATTTTTGCTTTGGCGGGTAGTGGGGAGGGATAGCTTGTCCACCAGCTAACGTGCGCTTCTCCTGTCTTTAACCTTgggaggggcgtgttgtcggggcCCCTTCACAGCGTGCACTTGAAAGACGGGCGGTCATGAAAGAGGCCATCGACTTTTGCAGACTTCAAAGGGAGCCTTTTTATCCGTCTCCTCTCTGCGTATCTGGTTTAAGGGTCCGCTCCTGGCCAGACCCGTGGGCTTAGGGGCATTCAAAGGGGGCGGGGAGATCAGAAGGGTGGCTGAATCACCCCTGAACAGGGTGCAATGTTTTGGGAGAGGGGGTGGAAAGGCACAATAGAGTAGAATTAAAGTTTAATGAGCAACAATTGTAAGCATGCTGGGACCAAGGGAGGGGGCCAGTCTGGTGCAGGGAACATGAAAACCCCTACCAGTTTTGATGTTCCTTTTTTTCAAGCTTGTCATATGGTGTTCTATCAAAGACAATAGGTCCCCATGAcacctttatttttttttacacggACCATATTTTAGAATAGAGTCTGCCCTCAAATGGGGAGAGACTTTTCAGTCATTGTCTGCTCTGTCTTAACTGAGGAGAGAACTCCCCTTTGTACGGAGAGTTGATAGAGTATTGCAGGTGTCATCAGTTTACGCCTGTTGCACCCCCTAGTGGAGTGTAAAGAAATGTCTCTCTAGATTAAAGGACATTTTAGGCGAGGATGTTTTCAAGCTCTTCTGGGGCTTAAAAACACAGGTACATTATATACTAAAGTATAGCTGAATATGCATGGATACCCTCTGATATTGTTTTTGTACTATAAGTGGGGTTATCATTCCATCTTAATTAATACACCAGAAATCCAAAGATAGTGAAGTCCAGTGAGATGTGTTAAGTAACACAGTATTTTTAGGTTCAGCATTTGAAGTTGGAACTGAGAGATTGACATGAAGTTGTGACTGTAGAGGAAGTATTTTGACTCCGTAACCCCAGTGTTCCCTTTGTCCCCCTGTGTACATGAATACTTACCCATCTACCTCAACTGTGTGAGATGTTGTGTGGCAAAGAAGTTTCTTAACCAAAGATTCCATCCTTTCAgggtgtctgtctatctgtctgtccatctgtctctcatGCTTTTTCAAAACCAAATGTGCTGGAATCAATCTGTTACAGGAGCAACCAAGCCCCATCCAGCCAAAGCGTAGTCCAGTGTACTACAGAAGTCATATTTACCAATAATCTGTATATAATCATTTTCAAGACCAAAAAAGTAGGTGACAATCCAAGCAAGGAGGATCTTGCTGTAATCAACGTTGCCTATTCCTTGTACCAAACTAGAATCATGTGACTTACTGTAACAGTTATGAAAGCCCAAGAATCAAGAGTTCAACCAAAAACAAAAGGTCAAGAGGAGACTAAAGCTATTTTTTCACATTTGTAAAACCATTATTCCTTTTCCAATATGTTAGTGTATTTGAAATACTGTTTGATCCCACTGTTGGGAGCAGGAATACATGACTCCATTCAAAAGCTTAAACGAGGCCAAATTGGGGGAAATATTGTATTTGACATGGGTTTGTGTCTGGGTTCCTGAACTAGGACACCCACCATACTTATCGTGCCATTCTCGTCCATGTGTTAGACTAACTAATGAACGCGGCTAACCAACCAAAGGCTTAAAacacaacactttacatgtcaaTCATGGTGGGACATTTTGTAACAACAACTAAAGAGAATCCCTTTGAATACCTCATGTGAAATTGTTTGTTGTGATGTTGCACCAAAAAATTAAAATGACTCATTTGTAACCCAA

Function

NR:

description
hepatocyte nuclear factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593955.2 True 5991 mRNA 0.45 3 23820422 23832249

Neighbor

gene id symbol gene type direction distance location
LOC110514613 hormad1 coding upstream 25223 23780400 ~ 23795199 (+)
LOC110514561 NA coding upstream 101661 23713371 ~ 23718761 (+)
LOC110514526 LOC106605333 coding upstream 111606 23702665 ~ 23708816 (+)
LOC110514513 LOC106580947 coding upstream 123976 23677362 ~ 23696446 (+)
LOC110514472 LOC106581037 coding upstream 445982 23369004 ~ 23374440 (+)
LOC110514708 LOC106580852 coding downstream 35018 23867267 ~ 23886989 (+)
LOC110514755 LOC106580807 coding downstream 59636 23891885 ~ 23907345 (+)
LOC110514733 LOC106580799 coding downstream 76639 23908750 ~ 23932207 (+)
LOC110514794 LOC106580834 coding downstream 106701 23938950 ~ 23941425 (+)
LOC110514781 isg20l2 coding downstream 114559 23946808 ~ 23950487 (+)
G236549 LOC106580904 non-coding upstream 50260 23765855 ~ 23770162 (+)
G236625 NA non-coding upstream 54581 23765552 ~ 23765841 (+)
G236623 NA non-coding upstream 58071 23761979 ~ 23762351 (+)
G236622 NA non-coding upstream 61038 23758573 ~ 23759384 (+)
G236616 NA non-coding upstream 70916 23749270 ~ 23749506 (+)
G236647 LOC106580864 non-coding downstream 154 23832403 ~ 23850161 (+)
G236671 NA non-coding downstream 38632 23870881 ~ 23871565 (+)
G236672 NA non-coding downstream 42744 23874993 ~ 23875259 (+)
G236658 NA non-coding downstream 51031 23883280 ~ 23889797 (+)
G236372 LOC106581434 other upstream 469607 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 471044 23346880 ~ 23349378 (+)
G236301 NA other upstream 621347 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 640123 23144516 ~ 23191853 (+)
G236753 NA other downstream 223070 24055319 ~ 24055667 (+)
G238034 NA other downstream 917156 24749405 ~ 24750383 (+)
G238047 NA other downstream 933417 24765666 ~ 24766363 (+)
G238050 NA other downstream 943030 24775279 ~ 24775945 (+)

Expression


Co-expression Network