LOC100136261 (cats)


Basic Information

Item Value
gene id LOC100136261
gene name cats
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23832402 ~ 23840512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593956.2
CCTTCACAAATAAATATAAAGCAGGAAAACAGATCCCACTGAAATCAATTGACGCGCCTTGCTCTCCTCTGAAGGCATCAGGTGCACTCCGAGTTTTACAAGGCATGATGTTGTGGAGCCTGCTGCTCGCTGCACTATGTGGCACAGCATTTGCCCTGTTTGACCCAATGCTGGAACAGCACTGGCAGATGTGGAAGAAGACACATGGCAAGAACTACCAGACTGAGGTTGAGGAGCTGGGCCGAAGGGAGGTCTGGGAGAGGAATCTTCAGCTGATCAGCCTCCACAACCTGGAGGCGTCCATGGACATGCACACCTATGACCTGGGCATGAATCACATGGGGGACATGACCCAAGAAGAGATTGCCCAGTCTTATGCCTCATTGCGTGTTCCTGCTGACCTCAAGAGGGAGCCCTCTGCATTTGTAGGATCCTCCGGTGCCCCCATACCTGATACCTTTGACTGGAGAAAGAAGGGCTACGTCACTAAAGTCAAAATGCAGGGCTCCTGTGGCTCCTGCTGGGCATTCAGCTCTGTTGGAGCCCTGGAGGGCCAGCTGATGAAGACCACAGGTAAACTGATAGACATCAGCTCCCAGAACCTGGTGGACTGCTCCTCCAAATACGGCAACAAGGGCTGCAATGGTGGCTTCATGAGCCAGGCCTTCCAGTATGTCATCGACAACCAGGGCATTGACTCTGACCAATCCTACCCCTACAAGGGAGTGCAACAACAGTGCAGCTACAACCCTGCTCAGCGTGCTGCAAACTGTTCCAAGTACAGCTTTCTACCTGAGGGGGATGAGGGGGCACTGAAAGAAGCCCTGGCCACCATCGGACCCATCTCTGTTGCCATTGATGCCACCCGACCTCATTTTACCTTCTACCGCAGTGGAGTTTACAATGATCCAACTTGCACAAAGAAGATAAACCATGCTGTCCTTGCTGTGGGGTACGGTACCCTGGGCGGGCAGGATTACTGGCTGGTGAAGAACAGCTGGGGCTTATCGTGGGGAGACCAGGGATATATACGGATGTCACGCAACAAGGACAACCAGTGTGGCATCGCCTTGTACGGCTGCTACCCTGTCATGTAACTCCTGCCAATCAAAGGGGTCTAACTGGAAAAGCTGAGCCCTTTTATTAATTTAATGTAATTCATTTTTACTTCCTCCATTGTTTTAGTGTTGTTTTTACCATTTCACTTTCTATCACTTCATGTCTATATAGACAGTACTTCTTTAGAAGTGTTTTTACAAATCATATATAAGTCCAATGTGATTATCTACATTATCACCGTAGCTAGcatccagggggtgtacttgtacatcaagctgcctcacgctacagaaacaggagatgcaTGCCAAGGCTCGTGCAAGGCTACATACTTATttaaatcaaagtatattttgtCATCAAATAAAAATAACTTTTAAAGAACAA

Function

NR:

description
cathepsin S

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593956.2 True 1446 mRNA 0.49 8 23832402 23840512

Neighbor

gene id symbol gene type direction distance location
LOC110514600 ensa coding downstream 52244 23771511 ~ 23780158 (-)
LOC110514588 LOC106580904 coding downstream 61526 23768099 ~ 23770876 (-)
LOC110514538 tmod4 coding downstream 102504 23719389 ~ 23729898 (-)
LOC110514548 LOC106580919 coding downstream 119080 23710004 ~ 23713322 (-)
LOC110514498 LOC106580978 coding downstream 268911 23406253 ~ 23563491 (-)
LOC110514697 LOC106580864 coding upstream 829 23841341 ~ 23849924 (-)
LOC110514815 LOC106580773 coding upstream 135362 23975874 ~ 23980300 (-)
LOC118947709 NA coding upstream 227418 24067930 ~ 24078853 (-)
LOC110514831 nes coding upstream 348697 24189209 ~ 24198813 (-)
gpatch4 gpatch4 coding upstream 376993 24217505 ~ 24221727 (-)
G237396 NA non-coding downstream 82581 23749554 ~ 23749821 (-)
G237366 LOC106580947 non-coding downstream 145672 23685154 ~ 23686730 (-)
G237162 NA non-coding downstream 445999 23379046 ~ 23386403 (-)
G237114 NA non-coding downstream 538079 23294120 ~ 23294323 (-)
G237086 NA non-coding downstream 541420 23289532 ~ 23290982 (-)
G237457 NA non-coding upstream 26760 23867272 ~ 23867534 (-)
G237462 NA non-coding upstream 31158 23871670 ~ 23871871 (-)
G237463 NA non-coding upstream 31749 23872261 ~ 23872770 (-)
G237464 NA non-coding upstream 32804 23873316 ~ 23873537 (-)
G237470 NA non-coding upstream 41135 23881647 ~ 23884871 (-)
G237047 NA other downstream 643371 23157109 ~ 23189031 (-)
G235881 NA other downstream 1257413 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2076901 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 2088991 21738845 ~ 21743411 (-)
G237657 LOC106605316 other upstream 340044 24180556 ~ 24183964 (-)
G237832 NA other upstream 680707 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 929050 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1096004 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 1358576 25171287 ~ 25236536 (-)

Expression


Co-expression Network