LOC110514697 (LOC106580864)


Basic Information

Item Value
gene id LOC110514697
gene name LOC106580864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23841341 ~ 23849924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972601.1
ACCGCTATCATCAAATGGAGTCATGCCAGCCACAAGTTCTGACCGAGCTCAATTGTCATGAAACGCATATACAGcgatgagtttctctctctttcatacaaattTATAACGAGGAACgcccacaatgtgttttgtgtgtggaagcgcttagtaatgagtctctcataacgaacaaattaataaaacgacacgtcctgaccaaacatccacagcatgatggtaaacccagggagttctttcagaacaggacagaatgATTCAGGAAACAGTGATTCGACAGTGGAAAAAATGCTGCTGTGTGGTTGTGTGCTGTTGCTCTTGGGCTCAGTCCTAGCCCATCCTCTGAATGAGATGTCACTGGACGCACAGTGGGACTCCTGGAAGACCACCCACCTGAGAGAGTACAACGGCCtgGGGGAGGAGGCGATCCGTAGAACCATCTGGGAGAAGAACATGCGTCTGATCGAAGCCCACAATGAGGAGGCCGCTCTGGGCATTCACTCGTACGAGCTGGGCATGAACCACCTGGGAGACATGacgTCAGAGGAGATAGTTGCAAAGCTGACTGGCCTTCAGGTGCCCATGAACAGGGACCGTAGCAACACCTGGATCCCTGGCAACAATGTGGTGAACCTCCCCAGGTCCATCGACTACCGCAAGAAGGGCATGGTGACCCCAGTCAAGAACCAGCTCTCCTGTGGCTCCTGCTGGGCCTTCAGCTCTGCTGGGGCCCTGGAGGGCCAGCTGGCAAAGACCACAGGCAAACTGATAGACCTCAGCCCCCAGAACCTGGTGGACTGTGTTACTGAGAACAATGGCTGTGGTGGAGGCTACATGACCAACGCCTTCGAATACGTTGAGGAAAACGGAGGCATCGACACAGAGGAGGCTTACCCTTACCTTGGCCAGGATGAGCAGTGTGTCTACAACGCGTCTGGCATGGGTGCTCAGTGTCGCGGGTTCAAGGAGATCCCTGAGGGAGACGAGCAGGCACTGACCAAGGCTGTAGCCAAAGTGGGGCCTGTGGCTGTGGGCATCGATGCCACCCTCTCCACCTTCCAATTCTACCAGCGAGGTGTGTACTACGACCCCAACTGCAACAAGGATGACATCAACCACGCCGTGCTTGCAGTGGGCTATGGACAAACTGCCAAGGGCGAGAAATTCTGGATCGTCAAGAACAGCTGGAGCGAGAGCTGGGGCAAACAGGGCTACATCATGATGGCACGTAACCGCGGGAATGCGTGTGGCATTGCCAACCTGGCCAGTTACCCCATCATGTGAACACCAAGCGGCAGAGGGCACCATGGAAGCAGGGAAGCTAAACCACCAATCAATGACTACACCCAATACAGAAAATAACACTATGTTTCTGGAATAGCACATTCATATAGTCTGGAGGTTTGAGTATCCCAGAGTTCTTTTGCAAGCACTTTTAAACGCCCTACATCAAGTCTTACTGTTATATCTTCAAACTGCCAGACTTCAATTGTAGTCTGATCTACAGTGGAACAACTATGATTGTGATGAAGGATGTGCGTAGTGCACAGCACTTTACATAGGTTGTATTCAGTGTGTCAGGTCAGGTAACATTGCTGTGCAATGGGAGTTTTGTCTCACTTTCCTGTCAATGCAAAAAGGGCTTGTTGATCAAGATTGCTCCTGGTGGGTTTTTTGATGATGTTGACTTTTATTTTATTGTTCAGCACTTTTACACCAAATTCTGTTGATTGAATTGTAACATTGTTTTCTATTAAATGGAATAAAAGTTGATTCATTtgaaa
>XM_021593963.2
TACTGAAACTTTTCCCCCTCCTAAACTCCCGTCGCACTTCCTCAAACTCCAGACTATATAACTACTCACACGGCGACCTACTTCATCGCAGGGAAACAACTGGTCAAAGGAATTCATCCGACACCTTCTCTCCAAGTCTACAACCAAGAATGCTGCTGTGTGGTTGTGTGCTGTTGCTCTTGGGCTCAGTCCTAGCCCATCCTCTGAATGAGATGTCACTGGACGCACAGTGGGACTCCTGGAAGACCACCCACCTGAGAGAGTACAACGGCCtgGGGGAGGAGGCGATCCGTAGAACCATCTGGGAGAAGAACATGCGTCTGATCGAAGCCCACAATGAGGAGGCCGCTCTGGGCATTCACTCGTACGAGCTGGGCATGAACCACCTGGGAGACATGacgTCAGAGGAGATAGTTGCAAAGCTGACTGGCCTTCAGGTGCCCATGAACAGGGACCGTAGCAACACCTGGATCCCTGGCAACAATGTGGTGAACCTCCCCAGGTCCATCGACTACCGCAAGAAGGGCATGGTGACCCCAGTCAAGAACCAGCTCTCCTGTGGCTCCTGCTGGGCCTTCAGCTCTGCTGGGGCCCTGGAGGGCCAGCTGGCAAAGACCACAGGCAAACTGATAGACCTCAGCCCCCAGAACCTGGTGGACTGTGTTACTGAGAACAATGGCTGTGGTGGAGGCTACATGACCAACGCCTTCGAATACGTTGAGGAAAACGGAGGCATCGACACAGAGGAGGCTTACCCTTACCTTGGCCAGGATGAGCAGTGTGTCTACAACGCGTCTGGCATGGGTGCTCAGTGTCGCGGGTTCAAGGAGATCCCTGAGGGAGACGAGCAGGCACTGACCAAGGCTGTAGCCAAAGTGGGGCCTGTGGCTGTGGGCATCGATGCCACCCTCTCCACCTTCCAATTCTACCAGCGAGGTGTGTACTACGACCCCAACTGCAACAAGGATGACATCAACCACGCCGTGCTTGCAGTGGGCTATGGACAAACTGCCAAGGGCGAGAAATTCTGGATCGTCAAGAACAGCTGGAGCGAGAGCTGGGGCAAACAGGGCTACATCATGATGGCACGTAACCGCGGGAATGCGTGTGGCATTGCCAACCTGGCCAGTTACCCCATCATGTGAACACCAAGCGGCAGAGGGCACCATGGAAGCAGGGAAGCTAAACCACCAATCAATGACTACACCCAATACAGAAAATAACACTATGTTTCTGGAATAGCACATTCATATAGTCTGGAGGTTTGAGTATCCCAGAGTTCTTTTGCAAGCACTTTTAAACGCCCTACATCAAGTCTTACTGTTATATCTTCAAACTGCCAGACTTCAATTGTAGTCTGATCTACAGTGGAACAACTATGATTGTGATGAAGGATGTGCGTAGTGCACAGCACTTTACATAGGTTGTATTCAGTGTGTCAGGTCAGGTAACATTGCTGTGCAATGGGAGTTTTGTCTCACTTTCCTGTCAATGCAAAAAGGGCTTGTTGATCAAGATTGCTCCTGGTGGGTTTTTTGATGATGTTGACTTTTATTTTATTGTTCAGCACTTTTACACCAAATTCTGTTGATTGAATTGTAACATTGTTTTCTATTAAATGGAATAAAAGTTGATTCATTtgaaa

Function

NR:

description
cathepsin K-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01371 CTSK; cathepsin K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972601.1 False 1784 mRNA 0.49 8 23841341 23848800
XM_021593963.2 True 1645 mRNA 0.51 8 23841341 23849924

Neighbor

gene id symbol gene type direction distance location
LOC100136261 cats coding downstream 829 23832402 ~ 23840512 (-)
LOC110514600 ensa coding downstream 61183 23771511 ~ 23780158 (-)
LOC110514588 LOC106580904 coding downstream 70465 23768099 ~ 23770876 (-)
LOC110514538 tmod4 coding downstream 111443 23719389 ~ 23729898 (-)
LOC110514548 LOC106580919 coding downstream 128019 23710004 ~ 23713322 (-)
LOC110514815 LOC106580773 coding upstream 125950 23975874 ~ 23980300 (-)
LOC118947709 NA coding upstream 218006 24067930 ~ 24078853 (-)
LOC110514831 nes coding upstream 339285 24189209 ~ 24198813 (-)
gpatch4 gpatch4 coding upstream 367581 24217505 ~ 24221727 (-)
LOC110514890 LOC106580679 coding upstream 409157 24259081 ~ 24286618 (-)
G237396 NA non-coding downstream 91520 23749554 ~ 23749821 (-)
G237366 LOC106580947 non-coding downstream 154611 23685154 ~ 23686730 (-)
G237162 NA non-coding downstream 454938 23379046 ~ 23386403 (-)
G237114 NA non-coding downstream 547018 23294120 ~ 23294323 (-)
G237086 NA non-coding downstream 550359 23289532 ~ 23290982 (-)
G237457 NA non-coding upstream 17348 23867272 ~ 23867534 (-)
G237462 NA non-coding upstream 21746 23871670 ~ 23871871 (-)
G237463 NA non-coding upstream 22337 23872261 ~ 23872770 (-)
G237464 NA non-coding upstream 23392 23873316 ~ 23873537 (-)
G237470 NA non-coding upstream 31723 23881647 ~ 23884871 (-)
G237047 NA other downstream 652310 23157109 ~ 23189031 (-)
G235881 NA other downstream 1266352 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2085840 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 2097930 21738845 ~ 21743411 (-)
G237657 LOC106605316 other upstream 330632 24180556 ~ 24183964 (-)
G237832 NA other upstream 671295 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 919638 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1086592 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 1349164 25171287 ~ 25236536 (-)

Expression


Co-expression Network