LOC110514708 (LOC106580852)


Basic Information

Item Value
gene id LOC110514708
gene name LOC106580852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23867267 ~ 23886989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593968.2
AGAGAATAAAGTAGTCGACCTAAATTATTTTCCGTAGCGTAATTATCCTAccccagagggtggtgcagtagTCAGAATAAATTAATGAAGGAGGACAAATTAAATTGTGTAAGGTCTCAAGGCATATGTTTTAAATTCTTGTAAAACATGATAAATCAACCAGCAACCGACACGAAAAGCTTAGGCGAGAAGGAACCCGAACGTTTGGAGTTGTGCGTAAAATATGGACATGTTTTACTATCAACGTTTTATTGAAGTCATTAGCTGGCCACTTGCAAGGACATGTTTTTCACAGAACATCATCTCTTATAGAAGACTTAACTCAAGTCTGATCCCAACTTGACCACCACTGGTTATGAAAACCTGCATCCTCACAGTAAATCGGCAGGAGGCAAGATGTTTGTGGAGTCTGTTGTCAGATGGGGGGCATGGAGCATCTTGCTCCAGTGTGGATTATTGGGCGTGTCAGCAGGGGACTTCCCCTGGCCTTGCCCTGCCAGGTGTGTTTGTCGGCTTGAGACTTTAGAAGTTAACTGCTCTGACAAACAGCTGACTTCTGTGTCTGAGGGCTTCGCTAGTGGCACCCAGCGCATCAATTTATCTCGTAACAAGCTGAAGATGCTGGGTCGTCGCCAGTTCTTTGGCATGACCCAGCTAGAGGATCTGGACATTAGTGACAATGTCATTGCCATGATTGAAGTGGAGGCTTTCCAGGGCCTGCAGAACCTCAAGACCCTGTGTATTAGGAGCAATCGCCTCAAGATCATCTCTGTGGGGGTCTTCTCCGGACTGCCCAGCCTGCGCTTCCTGGACCTGAGTGAGAACGAGATCCTGGTCTTTCTGGACTTTACTTTCCGTGAGTTGGTGAGCCTTCACCAGCTGGAGGCTGGGGAGAATGACCTGGTGTTCATCTCCCAGCGGGCCTTTACCGGCCTGCAGAACCTGCAGGAGCTCAATCTGGACCGCAGCAACCTGACCTCCATCCCCACCGAGGCACTATCCCAGCTCCAGAGCCTGACTCGGCTGCGCATGATCCGCCTCACCATCTCGGCGCTGCCCAACAATGCCTTCCGCCGCCTGCATCGGCTGCGTAGCCTCGTCATCTCCCACTGGCCCTTGCTGGACAAGCTGGCCAGCAACAGCCTGATTGGCCTCAACCTCACCTCGCTGGTCATCAGCAGCTGCAATCTCAGTGCTGTCCCATACCAGGCACTGCGCCACCTGGTCTACCTGGGCTACCTGGACCTGTCCTACAACCCCATCACAGCCATCCAGGGTAACCTGCTGGGGGACCTGTTGCGGCTGCAGGAACTGCACCTGGCTGGGGGCAACCTGCTCCGCATCGAGCCAGGGGCCTTCAGGGGGCTGGCATACTTCCGTCTGCTCAACGTGACATCCAACCAGCTCAGCACACTGGAGGACAGTGCCTTCCACTCGGTGGGGAATCTGCAGGTCCTGCGGCTGGATGGAAACCCCCTGGCCTGCGACTGCCGACTACTCTGGGTGGTCCGCCGGCGACAGCGCCTGAACTTTGACGGTCGCCAACCCACCTGCTCCACACCGGACATGGTGCGAGAACGGGAATTCCGGGACTTCTCAGAGAAAGAGCTCCCGAGATTGTTCACCTGCCGGCAGGCCCGCATTGTAGACCGCAGATCCCAGGAGGTCAGGGTGGAGGAGGGCACTACGGTGCTCTTCTCCTGCAAGGCAGATGGTGACCCAATGCCCTCCTTTACCTGGTTGTCAGCCCAGCGGATTCCTCTCTCCACTACGGGGCGCATCAGGGTGTTGTCCAATGGGACTCTAGAGGTACGCTATGCCCAGGTTCAGGACAGCGGCACATACCAGTGCACGGCGGGCAACGCAGCTGGCAACGACAGCCTGTACGTCAGCCTCTATGTGAAGGGTTTCCCACGTAACCGCACCATGCCCTTTTTCACCGACGAAGGCTGGATAGAGTCCTCACACGCCCCTACTGCCAACTCCTCTGCCCAGGTGGCCAACCAGTACCCATTTGATGCCAAGACATTGATCATCGCCACCACCATGGGCTTCCTGTCCTTCCTCAGCTCAGTGGCTATCTGCTTCGTCTTCATGTTCTTCTGGAGCCAGAGCAAGGGGCAAATCAAACACACAGCCACCATCGACTATGTGCCCCGTACCTCAATGGGggtaggaggagggggagggggagggggtggaggggatgCTGGCAAGTTCACCATGAAGCTTATCTAAGGTTATGTGGGAGAGAACTTGGGACACATTGACTGTGTCACCCCATGAGGGTGAAGGCTCTACAAGGACACAGGGCCACGGTCTGCCTTCAGAAAGCTAGATCCTCAGTGCACCCTTAACATACAgaaattatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaaca
>XM_021593971.2
AGCTTGCACCATGGTGTTAGAATGGCTCAAGCAGTTCCAAGCGTCTGAGCTCAAGTGGATGGGTTGAGTCAGCCCTTCTAGTCGCTATAAGACCATTTTCGGGAATAGCAGGGATGAGACAAGCCACTCTGGGACTGATTTCAAGTTGGCCGGTCAGTAATAAGGCTGTGTCGAGAAAAGACAGAGCGAGAAAGTGTCTCTATGATGTTGGACTGAGAGACCGCAGCTCCCGCAGGCCACTTGCAAGGACATGTTTTTCACAGAACATCATCTCTTATAGAAGACTTAACTCAAGTCTGATCCCAACTTGACCACCACTGGTTATGAAAACCTGCATCCTCACAGTAAATCGGCAGGAGGCAAGATGTTTGTGGAGTCTGTTGTCAGATGGGGGGCATGGAGCATCTTGCTCCAGTGTGGATTATTGGGCGTGTCAGCAGGGGACTTCCCCTGGCCTTGCCCTGCCAGGTGTGTTTGTCGGCTTGAGACTTTAGAAGTTAACTGCTCTGACAAACAGCTGACTTCTGTGTCTGAGGGCTTCGCTAGTGGCACCCAGCGCATCAATTTATCTCGTAACAAGCTGAAGATGCTGGGTCGTCGCCAGTTCTTTGGCATGACCCAGCTAGAGGATCTGGACATTAGTGACAATGTCATTGCCATGATTGAAGTGGAGGCTTTCCAGGGCCTGCAGAACCTCAAGACCCTGTGTATTAGGAGCAATCGCCTCAAGATCATCTCTGTGGGGGTCTTCTCCGGACTGCCCAGCCTGCGCTTCCTGGACCTGAGTGAGAACGAGATCCTGGTCTTTCTGGACTTTACTTTCCGTGAGTTGGTGAGCCTTCACCAGCTGGAGGCTGGGGAGAATGACCTGGTGTTCATCTCCCAGCGGGCCTTTACCGGCCTGCAGAACCTGCAGGAGCTCAATCTGGACCGCAGCAACCTGACCTCCATCCCCACCGAGGCACTATCCCAGCTCCAGAGCCTGACTCGGCTGCGCATGATCCGCCTCACCATCTCGGCGCTGCCCAACAATGCCTTCCGCCGCCTGCATCGGCTGCGTAGCCTCGTCATCTCCCACTGGCCCTTGCTGGACAAGCTGGCCAGCAACAGCCTGATTGGCCTCAACCTCACCTCGCTGGTCATCAGCAGCTGCAATCTCAGTGCTGTCCCATACCAGGCACTGCGCCACCTGGTCTACCTGGGCTACCTGGACCTGTCCTACAACCCCATCACAGCCATCCAGGGTAACCTGCTGGGGGACCTGTTGCGGCTGCAGGAACTGCACCTGGCTGGGGGCAACCTGCTCCGCATCGAGCCAGGGGCCTTCAGGGGGCTGGCATACTTCCGTCTGCTCAACGTGACATCCAACCAGCTCAGCACACTGGAGGACAGTGCCTTCCACTCGGTGGGGAATCTGCAGGTCCTGCGGCTGGATGGAAACCCCCTGGCCTGCGACTGCCGACTACTCTGGGTGGTCCGCCGGCGACAGCGCCTGAACTTTGACGGTCGCCAACCCACCTGCTCCACACCGGACATGGTGCGAGAACGGGAATTCCGGGACTTCTCAGAGAAAGAGCTCCCGAGATTGTTCACCTGCCGGCAGGCCCGCATTGTAGACCGCAGATCCCAGGAGGTCAGGGTGGAGGAGGGCACTACGGTGCTCTTCTCCTGCAAGGCAGATGGTGACCCAATGCCCTCCTTTACCTGGTTGTCAGCCCAGCGGATTCCTCTCTCCACTACGGGGCGCATCAGGGTGTTGTCCAATGGGACTCTAGAGGTACGCTATGCCCAGGTTCAGGACAGCGGCACATACCAGTGCACGGCGGGCAACGCAGCTGGCAACGACAGCCTGTACGTCAGCCTCTATGTGAAGGGTTTCCCACGTAACCGCACCATGCCCTTTTTCACCGACGAAGGCTGGATAGAGTCCTCACACGCCCCTACTGCCAACTCCTCTGCCCAGGTGGCCAACCAGTACCCATTTGATGCCAAGACATTGATCATCGCCACCACCATGGGCTTCCTGTCCTTCCTCAGCTCAGTGGCTATCTGCTTCGTCTTCATGTTCTTCTGGAGCCAGAGCAAGGGGCAAATCAAACACACAGCCACCATCGACTATGTGCCCCGTACCTCAATGGGggtaggaggagggggagggggagggggtggaggggatgCTGGCAAGTTCACCATGAAGCTTATCTAAGGTTATGTGGGAGAGAACTTGGGACACATTGACTGTGTCACCCCATGAGGGTGAAGGCTCTACAAGGACACAGGGCCACGGTCTGCCTTCAGAAAGCTAGATCCTCAGTGCACCCTTAACATACAgaaattatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaaca
>XM_036972657.1
AGCTTGCACCATGGTGTTAGAATGGCTCAAGCAGTTCCAAGCGTCTGAGCTCAAGTGGATGGGTTGAGTCAGCCCTTCTAGTCGCTATAAGACCATTTTCGGGAATAGCAGGGATGAGACAAGCCACTCTGGGACTGATTTCAAGTTGGCCGGCCACTTGCAAGGACATGTTTTTCACAGAACATCATCTCTTATAGAAGACTTAACTCAAGTCTGATCCCAACTTGACCACCACTGGTTATGAAAACCTGCATCCTCACAGTAAATCGGCAGGAGGCAAGATGTTTGTGGAGTCTGTTGTCAGATGGGGGGCATGGAGCATCTTGCTCCAGTGTGGATTATTGGGCGTGTCAGCAGGGGACTTCCCCTGGCCTTGCCCTGCCAGGTGTGTTTGTCGGCTTGAGACTTTAGAAGTTAACTGCTCTGACAAACAGCTGACTTCTGTGTCTGAGGGCTTCGCTAGTGGCACCCAGCGCATCAATTTATCTCGTAACAAGCTGAAGATGCTGGGTCGTCGCCAGTTCTTTGGCATGACCCAGCTAGAGGATCTGGACATTAGTGACAATGTCATTGCCATGATTGAAGTGGAGGCTTTCCAGGGCCTGCAGAACCTCAAGACCCTGTGTATTAGGAGCAATCGCCTCAAGATCATCTCTGTGGGGGTCTTCTCCGGACTGCCCAGCCTGCGCTTCCTGGACCTGAGTGAGAACGAGATCCTGGTCTTTCTGGACTTTACTTTCCGTGAGTTGGTGAGCCTTCACCAGCTGGAGGCTGGGGAGAATGACCTGGTGTTCATCTCCCAGCGGGCCTTTACCGGCCTGCAGAACCTGCAGGAGCTCAATCTGGACCGCAGCAACCTGACCTCCATCCCCACCGAGGCACTATCCCAGCTCCAGAGCCTGACTCGGCTGCGCATGATCCGCCTCACCATCTCGGCGCTGCCCAACAATGCCTTCCGCCGCCTGCATCGGCTGCGTAGCCTCGTCATCTCCCACTGGCCCTTGCTGGACAAGCTGGCCAGCAACAGCCTGATTGGCCTCAACCTCACCTCGCTGGTCATCAGCAGCTGCAATCTCAGTGCTGTCCCATACCAGGCACTGCGCCACCTGGTCTACCTGGGCTACCTGGACCTGTCCTACAACCCCATCACAGCCATCCAGGGTAACCTGCTGGGGGACCTGTTGCGGCTGCAGGAACTGCACCTGGCTGGGGGCAACCTGCTCCGCATCGAGCCAGGGGCCTTCAGGGGGCTGGCATACTTCCGTCTGCTCAACGTGACATCCAACCAGCTCAGCACACTGGAGGACAGTGCCTTCCACTCGGTGGGGAATCTGCAGGTCCTGCGGCTGGATGGAAACCCCCTGGCCTGCGACTGCCGACTACTCTGGGTGGTCCGCCGGCGACAGCGCCTGAACTTTGACGGTCGCCAACCCACCTGCTCCACACCGGACATGGTGCGAGAACGGGAATTCCGGGACTTCTCAGAGAAAGAGCTCCCGAGATTGTTCACCTGCCGGCAGGCCCGCATTGTAGACCGCAGATCCCAGGAGGTCAGGGTGGAGGAGGGCACTACGGTGCTCTTCTCCTGCAAGGCAGATGGTGACCCAATGCCCTCCTTTACCTGGTTGTCAGCCCAGCGGATTCCTCTCTCCACTACGGGGCGCATCAGGGTGTTGTCCAATGGGACTCTAGAGGTACGCTATGCCCAGGTTCAGGACAGCGGCACATACCAGTGCACGGCGGGCAACGCAGCTGGCAACGACAGCCTGTACGTCAGCCTCTATGTGAAGGGTTTCCCACGTAACCGCACCATGCCCTTTTTCACCGACGAAGGCTGGATAGAGTCCTCACACGCCCCTACTGCCAACTCCTCTGCCCAGGTGGCCAACCAGTACCCATTTGATGCCAAGACATTGATCATCGCCACCACCATGGGCTTCCTGTCCTTCCTCAGCTCAGTGGCTATCTGCTTCGTCTTCATGTTCTTCTGGAGCCAGAGCAAGGGGCAAATCAAACACACAGCCACCATCGACTATGTGCCCCGTACCTCAATGGGggtaggaggagggggagggggagggggtggaggggatgCTGGCAAGTTCACCATGAAGCTTATCTAAGGTTATGTGGGAGAGAACTTGGGACACATTGACTGTGTCACCCCATGAGGGTGAAGGCTCTACAAGGACACAGGGCCACGGTCTGCCTTCAGAAAGCTAGATCCTCAGTGCACCCTTAACATACAgaaattatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaaca

Function

NR:

description
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593968.2 False 2483 mRNA 0.54 3 23867267 23886989
XM_021593971.2 False 2451 mRNA 0.56 3 23880913 23886989
XM_036972657.1 True 2368 mRNA 0.56 3 23880913 23886989

Neighbor

gene id symbol gene type direction distance location
LOC110514668 LOC106580869 coding upstream 35018 23820422 ~ 23832249 (+)
LOC110514613 hormad1 coding upstream 72068 23780400 ~ 23795199 (+)
LOC110514561 NA coding upstream 148506 23713371 ~ 23718761 (+)
LOC110514526 LOC106605333 coding upstream 158451 23702665 ~ 23708816 (+)
LOC110514513 LOC106580947 coding upstream 170821 23677362 ~ 23696446 (+)
LOC110514755 LOC106580807 coding downstream 4896 23891885 ~ 23907345 (+)
LOC110514733 LOC106580799 coding downstream 21899 23908750 ~ 23932207 (+)
LOC110514794 LOC106580834 coding downstream 51961 23938950 ~ 23941425 (+)
LOC110514781 isg20l2 coding downstream 59819 23946808 ~ 23950487 (+)
LOC110503942 LOC106580754 coding downstream 70113 23957102 ~ 23975804 (+)
G236647 LOC106580864 non-coding upstream 17106 23832403 ~ 23850161 (+)
G236549 LOC106580904 non-coding upstream 97105 23765855 ~ 23770162 (+)
G236625 NA non-coding upstream 101426 23765552 ~ 23765841 (+)
G236623 NA non-coding upstream 104916 23761979 ~ 23762351 (+)
G236622 NA non-coding upstream 107883 23758573 ~ 23759384 (+)
G236684 NA non-coding downstream 45320 23932309 ~ 23933163 (+)
G236686 NA non-coding downstream 46299 23933288 ~ 23933833 (+)
G236687 NA non-coding downstream 46947 23933936 ~ 23934443 (+)
G236707 NA non-coding downstream 58557 23945546 ~ 23945785 (+)
G236372 LOC106581434 other upstream 516452 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 517889 23346880 ~ 23349378 (+)
G236301 NA other upstream 668192 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 686968 23144516 ~ 23191853 (+)
G236753 NA other downstream 168330 24055319 ~ 24055667 (+)
G238034 NA other downstream 862416 24749405 ~ 24750383 (+)
G238047 NA other downstream 878677 24765666 ~ 24766363 (+)
G238050 NA other downstream 888290 24775279 ~ 24775945 (+)

Expression


Co-expression Network