LOC110514755 (LOC106580807)


Basic Information

Item Value
gene id LOC110514755
gene name LOC106580807
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23891885 ~ 23907345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593980.2
TTGTTTTTGAGGTGGAGCCTGATACCCCGATTCTTCAGTGGACTGTCGGCAAGACGGGTTGCATGATTGAGGCCAATAGTCAGTCGCATAGATCAATACATTATACCAATACGAAAGCTGATTGCCTATTGTGGAAATAATAAAGTGAGAACTCATTCTATTATTAAATCCTTGGAAATCGGGCACATTGAGGACGTGGAATGATGAATTATATCATATTGGCGACCGTTTTTTCCATGGTTTTCGCCGAAAAGTCACCTCGGCTGAAATTCATTGTAAAAGAGCCGGCCAGGTATCACTTCTCCAAACCGGAGAACTACATGTCAGTGTACCACCAGGAGGGCACCAACGTGCTGTACGTGGGGGGCCAGACAGTGATCTACGTGCTGACGTTCACTGAAAGGGGGGTCCGCAACCTGCAGATCCCTGTGGTAACTGATGAAAACGCAAAGGCAGCTTGCATCGCCAAATCAGACCCACCAAAGttGGAGTGCGACAATTTCATCACAGTCATCCAGAAAGTCAATGACACTTTTGTGGTATGCGGGACAAATGCAGGAACCCCCAAATGCTGGCTGCTGGTAAATGACACTGTGTTGACTGACGCCCCCACCAATGGACAGATGGCACCAGCCTCTGACAtctcccctccctacccctcccagAGGTCCGTCAGTCTGTCTGCAGATGGGAATCTATACTCTGCTCTGTCAGCAGTGGGGCGTCACCCTGGCTCTATCCGCCGGACCTACGGCACTCAGAAGCTCCTGAAGACTGAGACCAAGTGGCTGCAGAgtccccagtttggtggagcagcagtaaTACCAGCCTCTCAAAAACACAAGGAGGAGATCTACTTCTTCTTCAGTGAGATCAATAAGACGGCCATGGTGGATGAGGAGCCCTACAGGTCGCGCATCGGCCGAATCTGCATGGTGGACGAGGGGGGTATAAAGAACCTGCTGGCGGACTCGTGGACTACCTTCCTGAAGGCCAGGGTGATGTGTGGTGCGGGTAGCACCCCCCAGCAGTACAACAACATCAGACAGGCGTTTGTGCTGTCTGAAATGGCCCAGGAGAAGAGGACCGGGGTCATGTACGGCCTGTTTGCCAACGCCTGGGACACAACAGTGATATGTGCTTACTCCATCGAGGACATTGACCAGGCCTTCGCCACGTCCAAACTGAAGGGCTACAGCAGTCCTCTGATTGGACATCGCCCTGGCACATGTGCCTTCAAGAACTCCACGGCAGCCCACAACCCTAAGATCCTGGGGGTGATCAGGGACCACCCGGAGATCGAGGACGTGATTCGTCCGGTCGGGGGTGCTCCGCTGAACCTGCCCACCGATGATCACTTCACACACACTGTCGCTGCCATGGTGCTGGCAGTCAACGACGAGCACTATACTGTGCTGTACCtgggaacagAACAGGGGAAAGTGCTCAAGGTTCTGCACACTATCGAGGATGCCTTTATCATATCCCAGTACTCCCTCTTCCATAACGAGGGTCCTGTTCTAAGCATGGCCATCGACTCTAAGAAGGGCCACCTTTATGTGGGCACGGCAATGGAGGTCCAGCGCATACCATTGGCTGACTGCGGTCGCTATGGAGACAGTTGCCGGGAGTGCATTCTGTCTCGGGATCCCTATTGTGGTTGGGACGCAGCCAGGAGGAGGTGCACACCCATCCCAGCTGGATACAACATCAGCACTGGGGCACTCACTCAGAGTCTGGACCACTCCAATGCCTCTATCTGTGGTGAAGCTGCTGCACTGAAGACCCATAGGACAAACCCCAAACAGGTGGTGATTGACTCGGACGGCCCCGTCAACCTCCCCTGCCCCGTGCACTCCTTTCACGCCACCTACCGCTGGGAGAAGGACAACTGTATCCAGCACTACCCCTGCTTCATCATTGGAGACTCCTGTGTGCTGGAACCCACCCCTGGCCTGCCCCTTAAGCAGGGGGTGTTCCGCTGCATGGCCACGGAGAACGGCTACAAGGTGGAGGTGGTCTCCTACAGGCTGGTGATCAACAGTGGGCCTCTGCCTGCCTCCTTGGCCTCCACCCTGGGGCCCTCCCTCCTTCTTGCTGCAGCCACCCTCTGGCTCCTGTAACCATTGCAAATGCTAAAGCTAACCCCTTAGCCTCTAAGGCCCTCTCtctgacagacaggagaggaggggccaCCATACCCAGGTTAGGTTCGCAGAGCATTGATATTAATGGTCGGGTAATGCGATCAGTGTTGCCCGCAGAGACTGTTTTCAGAAAAAGtgtttttaaatttattttcCGTTGTTCAGAAAATGCCTGAAAATAAGCCAAgccatttatttttaaataatataTGGGCCTACCATACTAACTAATACTGTACTGTTTAAACAAAAAAATACCTAAAACAAACTCAAAATACATAACATTTAAACTTAATTAATACATTAACATCAATATGGGTTTTATGGAAAGACAAACTATATTACCATGTCTTATTCTGAATTTTAAATACAGATTCAAACCACAAGATATGCTTTGCGAACCTTGCCTGTCCACCCAAGAGATGACATCTCATGAGTTGTGTTAAATACAATACCAAGCCAATTTCTCTTTATGGTTTCTCAACTTATTTTGAAACTTGATTGTGCTACTTTGTGAATATTTGAAGCTTGAATACTGCTCTAACATCTAAACATCCTGTTGAATGTCATAAGTATAGGCTAGTAATTAGAAAATGTCTGGTATtgagtaaaaacaaaaaaagccTTAACAATTCTGGGACATACCCCCTAAGCACAATTTGCTGTGAAAGCATAACTGCTCAATTGTGTTGACTTGGATCTGTGAATGAGGTGGCCAAGTCTTACTTTGATGCTGGGAGGAAGTGTCATCATTTTGACAAGAAGTCATCTTTTTGACAGGAAGTAGGTAGAAGAGCGTGAGCTCATCTTCGAACATCACTGTGTCTCGGCAAGTCCTCTGTAGTAAAAGGCAGTTTTTGCATAATTTTAATGGACAGTATCAGACATTCATATTATGCTACTTCATTTTCAATAAACGTAAGTTCAGTAAACATCATTCAGTGGCAGGTGAGGCCAAATTAGAATTGAGTAGATGACATGTAGAGTTAGTTGCATTTTGTAGTTTGCTAAATATGAGAAAAAGCTTGTGATTATATGAGTACCGTGTGTTAAGTATTTTATTGCTCCGCAAATGCTGATTTCCACCATTGCTGCCTATGAAAGTTATTCTTGACGGTTCAAGGTTTTATACTGTACGGAAGTCATGAGAGGAcatatgaataaaataaaatcaatccTTGTTATGTCGAGATAACAACTTATTTATCTCATGATCACGACATAACAAACATTTTGCCGAGGTCACAAGATTAACTCTATGAATAGGAGTAGACGCATTGATGATAGATTGACAGCATGGCTGAGGCGGTAGAGCGCATATGTTTTGATCGATTGCTACACTAAGGGATGGTACATTTCATGCTAACATATCAGTCATTATCAGTTTATAAATTAGAATGTTAGCCAGCTAAATGTCCCTTACCTTGAACAAAGAGCTCTTGGGGCATCTAAGCCGTCATGGGGCATTTGAGTCTTGAACGATGCCTGACAGGCTGGCCTGTCTCTGAGGCTGTATGCCACTCCCAAGACCACAGGCAATCGCATGCAAGCAACAATGCAGCTAACTTGGCTAGTCTTGTGAGTGCGCAAGCtatctagctagttagctaggtagtcttactagatagctagctagcttgttataTATGCTGGTTGTTAGCTTGCATAACTGATATGTGTATAATTGTAAGGGGCACTTCATGTTTTATGGATAATATTACAATTTACAGAGTGGGTGAGCACAATTCCTGACAGGCTAATAAGATTACATTTTATCCTCAGACATTGATCAGATTCAATTGCAGTCTCAGAGGCTGATGAAATCAGGATTCCACCTTGTAGGTTGTTTCATAGGTAATGCTCCTTGCAAATCTGCCTGCAAAGAGATTTACCTATGAAATAACCTACAGGGCAGCATCCTGATTTATCAGCCTCTGAGGCTGAAATTTAATCTGATCAGCCTGTCAGAAATGCGGCTCACCCACTGCAAATGTAAATATTATTCACAATAAATGAAGTGTCCCTTATAATTTATACACATATCAGTTATGCAAGCTAACCACCAGCATAGATAacaagctagcttgctagctagaaAGCTCACaagtagagctgtgttgtttcTTGCATATGATTTAATATGGTCTTGGGGGTGGCGGGCACCCTGGGAGACTGTGTCGCCTGTCAGGCATCGTTCCGTGCTTAAATGCCCCACACAGCCACAGGGCTCCTTGGTGAAGTGGTTATCGGGCATCTGAAGAAGAAATGAATGGGTGATAAGTTGTACTTTTGATTATCTTGTGATCTCGACAAAACAACTTTTGTTATGAGAAAAATATGTCTTGATCTCGACACAACGAGATAACTATTTTTTTAATTCATATGTCCTCTCTGGATTTCCATAATACTGTGGATGTACAATGATGTTACTCATTGACTGCTTTAACTAACCTATTCTCAATGGGAAAATCCAGTGCACAATACTCAAAGGGGTTATTTTCATACTTGTATCTGTATGCTGTAACAAAAGGCTTGACATAATTTGATAGGATCATTTTGTGAAGTAGAACACTTTGAGCAGCCACCATACTCTGGGGAGAAAGACTGAAATTGATTGACATTTCTGGAAGATATGGAACAAAATTCCTCTTTAAGCAAtagatgttttttattttagcaCCTGACCTCACATAACAATAGTGTATGCTTTATTGGAGGCAGAGAATGTTTTCTGGGAGGGAGTGGTTTACTCAAAGCAAATGTTGAATGTAACATATTAATATGAACGTAGTTGCAACAAAGTGCAGGTCTATTGTCCCCATGTATTGATTGTTTTATCTCAGTGCTGAAGCACCACCTTATAACCACTACTGTGTTTTGAACTGTGCCACTGAGCTTTGTAGGCGAATTTTGAAATGGCAAAAAAAAACTGTCGCCTGAAAATATTGGTCGAAAACAGTCGACATAATGCTGTTCTTAGAACAGTTTTAGCCATAGTTCTGCAggttctatctttctctctgggGGTGGCTGTAAGTTTGTTGTCTCGAGGTCTCGGAAGGATCTGCTTGCTGCATTGCACTGATGCGGGTTATTGACTGTGCCAAACATAAGCTGTGTTGAGCCGCCTCATCCGCCGCCTGCCGCTTCTCACTCACTTAGCACTTTGAGTAATTGGTTTCCCAAATCTCTTTCTCAAACTCACACACATTCTTATATATGTCACAAATACACACAGGCATGtaggtgcgcgcacacacacacacacacacacacacacctcttgttTACCAATCACCCACTTCAATCTCATTCTCTTTACTCCAGTATTTACTGTTGCTTATCTGTTTCATTGTATTTTGAGCATGAAGCTGGTGTGTCTCTGAAAACAGTGAACAGGAGCCACTCACTCATACGCTAGCCAACACTAATTAGGCAACTGAACCTGTATCGCTCACTGCAGAGACATACAAGCTCTTTTACCAAGACAGATGGCCTAGTGTCAGTGGGTATTGTTAAAAACGGTCAGTGAATCGTGGCTGTGCAGAGTTGATTGTATTTGGCCTTTCATGGATTTCCAAGGGGCAGCAGTGATATGGGAGTTTGTTTTCTCTGGAGCACTTTATTTAATGACCACCTTCATAGCCGGGAGTCCCCGCTTTGACGTGGACATAAACAGTGGATATATCGCATGCGAGTGATTATCATTATCCTCGAAAGATTTAAACTGGTTTGTTGTGTTCAATTACCCGTTAGATAAATAATGCCAGCAGAGAAATAGAGTGAAGTGAATTGTATTGTCTTTAAATCCTTTCTCTGGTGCTTTGGACAGTGTTGATTGCATTCTGTGTCTTAGTACATTTGTATTGGGAATCAGCTTACCAAACTCGATTGAAGAGGAGATTGTATTGGTATCATGCTCGTTAATGCCTCACCATAACCATTTTTTTTAAGGACAGATGTCTGTCTATATGAAGTGTTAATACATGTCCATGTAACAGATCTGTAACTCCATATGTTTCCCTTTACTGAACATGTACAGTGAAAATCAATAAAGTAATCAACTACA
>TU270471
GTTGATGGTACTGCAGTAGCTGAGGCTTGTTGAGGATAGAGCAGCAGCATTAGCTCCAGGACCTCATTAACACACGCGAACACAAGCGCGcgtaaacacgcacacacacacacacacacacacacacacacacacacacctcttgttTACCAATCACCCACTTCAATCTCATTCTCTTTACTCCAGTATTTACTGTTGCTTATCTGTTTCATTGTATTTTGAGCATGAAGCTGGTGTGTCTCTGAAAACAGTGAACAGGAGCCACTCACTCATACGCTAGCCAACACTAATTAGGCAACTGAACCTGTATCGCTCACTGCAGAGACATACAAGCTCTTTTACCAAGACAGATGGCCTAGTGTCAGTGGGTATTGTTAAAAACGGTCAGTGAATCGTGGCTGTGCAGAGTTGATTGTATTTGGCCTTTCATGGATTTCCAAGGGGCAGCAGTGATATGGGAGTTTGTTTTCTCTGGAGCACTTTATTTAATGACCACCTTCATAGCCGGGAGTCCCCGCTTTGACGTGGACATAAACAGTGGATATATCGCATGCGAGTGATTATCATTATCCTCGAAAGATTTAAACTGGTTTGTTGTGTTCAATTACCCGTTAGATAAATAATGCCAGCAGAGAAATAGAGTGAAGTGAATTGTATTGTCTTTAAATCCTTTCTCTGGTGCTTTGGACAGTGTTGATTGCATTCTGTGTCTTAGTACATTTGTATTGGGAATCAGCTTACCAAACTCGATTGAAGAGGAGATTGTATTGGTATCATGCTCGTTAATGCCTCACCATAACCATTTTTTTTAAGGACAGATGTCTGTCTATATGAAGTGTTAATACATGTCCATGTAACAGATCTGTAACTCCATATGTTTCCCTTTACTGAACATGTACAGTGAAAATCAATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593980.2 False 6216 mRNA 0.44 14 23891885 23907345
TU270471 True 916 lncRNA 0.34 2 23893598 23907333

Neighbor

gene id symbol gene type direction distance location
LOC110514708 LOC106580852 coding upstream 4896 23867267 ~ 23886989 (+)
LOC110514668 LOC106580869 coding upstream 59636 23820422 ~ 23832249 (+)
LOC110514613 hormad1 coding upstream 96686 23780400 ~ 23795199 (+)
LOC110514561 NA coding upstream 173124 23713371 ~ 23718761 (+)
LOC110514526 LOC106605333 coding upstream 183069 23702665 ~ 23708816 (+)
LOC110514733 LOC106580799 coding downstream 1543 23908750 ~ 23932207 (+)
LOC110514794 LOC106580834 coding downstream 31605 23938950 ~ 23941425 (+)
LOC110514781 isg20l2 coding downstream 39463 23946808 ~ 23950487 (+)
LOC110503942 LOC106580754 coding downstream 49757 23957102 ~ 23975804 (+)
rhgb rhgb coding downstream 112406 24019751 ~ 24029429 (+)
G236658 NA non-coding upstream 2088 23883280 ~ 23889797 (+)
G236672 NA non-coding upstream 16626 23874993 ~ 23875259 (+)
G236671 NA non-coding upstream 20320 23870881 ~ 23871565 (+)
G236647 LOC106580864 non-coding upstream 41724 23832403 ~ 23850161 (+)
G236549 LOC106580904 non-coding upstream 121723 23765855 ~ 23770162 (+)
G236684 NA non-coding downstream 24964 23932309 ~ 23933163 (+)
G236686 NA non-coding downstream 25943 23933288 ~ 23933833 (+)
G236687 NA non-coding downstream 26591 23933936 ~ 23934443 (+)
G236707 NA non-coding downstream 38201 23945546 ~ 23945785 (+)
G236743 NA non-coding downstream 124290 24031635 ~ 24031848 (+)
G236372 LOC106581434 other upstream 541070 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 542507 23346880 ~ 23349378 (+)
G236301 NA other upstream 692810 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 711586 23144516 ~ 23191853 (+)
G236753 NA other downstream 147974 24055319 ~ 24055667 (+)
G238034 NA other downstream 842060 24749405 ~ 24750383 (+)
G238047 NA other downstream 858321 24765666 ~ 24766363 (+)
G238050 NA other downstream 867934 24775279 ~ 24775945 (+)

Expression


Co-expression Network