LOC110514815 (LOC106580773)


Basic Information

Item Value
gene id LOC110514815
gene name LOC106580773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23975874 ~ 23980300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594003.2
CCTCATTAACATCTGGAGcagaacagagaacaacccaGTTTACACTGGCCACCACGGCCTGAGACATAAGAGCactggtctgagagagagagagagagtcaagagaaggagagagagatatagtcaagggaaggagagagagagagagagagagagaccttgggGGTCAAAGGGAGAAGAGATCACAGTGGCAGAAATGGGCCTCAGAGAAAAATAAAGAAGATATTTTTGCTTCCGAACTATCCCACTAACGGAAAACGGTCATGTTTGACTGAACAACCCTCAAAGGTGATCAGTCACCGTTGTTTTGAAGAGAAAATCAAGCCTCATCTCATCAACTGCTGCAGGGACAGGGAGGGGGACTTGCTTCATTATGAACTGTGCTGCTATTTTGATACTAACCGCAAGTTGTTTCAGTTGGACGTCTACTATTTATCTGCCAAACAAACAAGAAACAAAGAAACTGAAGTATCTGCTTGAGCCTCCTGTTTATGCTGAAGTAACCAGCCCTCGGGGAGGAAATGCCACTTTGCCATGTGTACTGCGATTCAAACCAAGCCATTACAAGGTGAAATGGACAAAACTGGAACCACTTCGTCGTGGAAGCGAGAACATTGTCATGATCACTAACGGTTCAGCCCACAAACCCTATGGCCTGCTTGGGCCACGGGCCTCGCTTCGTAAGGCTCATGCCATGGATGCCTCACTACAACTCAGCAACTTGGAACTAGAAGACGATGGTAGATATCGCTGTGAGCTGATCAACGGTATTGAGGATGAGAGCGTCATCATTACATTGAGGATAGAAGGGATGGTGTTTCCATATCAGAGCAAAAATGGCCGTTACAAATTCACCTACAAGGAAGCTAAGGAGGCCTGTGCTGAACAGGATGGCACATTGGCCACATTCAAGCAGCTATACAGAGCCTGGACAGAGGGTCTGGATTGGTGCAACGCGGGATGGCTCATCGATGGGACAGTCCACTACCCCATCCTGCACCCACGAGCAGAATGTGGGGGGGAGCTGCTACCTGGCATTCGCAGCTATGGCCCCCGGGACAGGATCCGGGACCACTTTGATGCCTTCTGTTTCACCTCTAGAACCACAGgCTTTGTGTTCTTCGTTGGACAGCCACTCACATTTGGGGAGGCAATGCAGGCATGTAGGGGTGAGGGAGCAGAGTTAGCTCTTGTTGGACAGCTCTATTCGGCCTGGCGTTTCCTGAGCTATGACCGCTGTGATGGAGGTTGGTTGAAGGACGGCAGTGTGCGTTTCCCTATCACCACCCCTAGAGAGCACTGTGGCGGTATTCCCGAGGCTGGGGTGCGCACCTTTGGGTACCCCAACAAGACCCTGCGTCTCTATGGTGCCTACTGCTACAGGTAGCTTTCATGAGACCCATAGCGTGTGGAGCCTACTTCCACTGACTTCATAGATCCAAGATGCAGAACCATTGTGAAGATTACCAGTGACCCCTACAGGTTTCAGTACGTAGGGCTTGCAGATACAGGTAGTCAAAAGGCTAGGAACTGGTTCCTCAACAACGGCAAAAAGATACAAGTAGCACTGCGCTTTTCTGCAATACTACAATATGTTATTACAGGAAACCTCGAAGGCTTAATGCCTTTTTCCATGGGACACATCAACAAAAGCCTGCCACTTTTATGAGCTTTACTGCTACAGGTAACAACTGCTGTACATGTTTTCCTGCGCTTGTGTAACATTTGTTTTGTGAACTTTGTTATCCAAGAAGCATTATTCTAGTGTAACAGGATAGTTATTACACAATGACAAATTCCTAAAATGCTACTGTTAGCTTCTTAGCTGATGTAAGAGAGTGTGTAAATAGCAGATTGGGAGAAAGTATACACACTGAGCAAAACTGTAATACAATAAAATATCTTTACAGTGTA

Function

NR:

description
hyaluronan and proteoglycan link protein 2-like

GO: NA

KEGG:

id description
K06851 HAPLN2; hyaluronan and proteoglycan link protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594003.2 True 1914 mRNA 0.47 6 23975874 23980300

Neighbor

gene id symbol gene type direction distance location
LOC110514697 LOC106580864 coding downstream 125950 23841341 ~ 23849924 (-)
LOC100136261 cats coding downstream 135362 23832402 ~ 23840512 (-)
LOC110514600 ensa coding downstream 195716 23771511 ~ 23780158 (-)
LOC110514588 LOC106580904 coding downstream 204998 23768099 ~ 23770876 (-)
LOC110514538 tmod4 coding downstream 245976 23719389 ~ 23729898 (-)
LOC118947709 NA coding upstream 87630 24067930 ~ 24078853 (-)
LOC110514831 nes coding upstream 208909 24189209 ~ 24198813 (-)
gpatch4 gpatch4 coding upstream 237205 24217505 ~ 24221727 (-)
LOC110514890 LOC106580679 coding upstream 278781 24259081 ~ 24286618 (-)
LOC110514944 LOC106580659 coding upstream 333255 24313555 ~ 24323816 (-)
G237522 NA non-coding downstream 8167 23965964 ~ 23967707 (-)
G237510 NA non-coding downstream 37356 23937601 ~ 23938518 (-)
G237512 NA non-coding downstream 41046 23934003 ~ 23934828 (-)
G237442 NA non-coding downstream 68529 23905374 ~ 23907345 (-)
G237479 NA non-coding downstream 82340 23893301 ~ 23893534 (-)
G237563 NA non-coding upstream 65163 24045463 ~ 24045671 (-)
G237567 NA non-coding upstream 78044 24058344 ~ 24058612 (-)
G237593 NA non-coding upstream 120924 24101224 ~ 24101468 (-)
G237594 NA non-coding upstream 121552 24101852 ~ 24102101 (-)
G237663 NA non-coding upstream 219348 24199648 ~ 24199944 (-)
G237047 NA other downstream 786843 23157109 ~ 23189031 (-)
G235881 NA other downstream 1400885 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2220373 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 2232463 21738845 ~ 21743411 (-)
G237657 LOC106605316 other upstream 200256 24180556 ~ 24183964 (-)
G237832 NA other upstream 540919 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 789262 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 956216 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 1218788 25171287 ~ 25236536 (-)

Expression


Co-expression Network