LOC118947709


Basic Information

Item Value
gene id LOC118947709
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24067930 ~ 24078853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041888.1
ATAACCGAAAGTAACAAGAATCCCATTACGCTCCTGAAAGGCACCAAGATCCCCAACACATATCCCAAATGCTGCACCACCCCATTCTACCAATCACAGCAAAACAAGCAACGAAAATGGCCGACATCATAGGACACGGAAGCAGAAGAAAAAGTCAAACTACCAACACCACCATGACAGAATGCTGGCAAAATGAGGCTGaaaaacagggagaggaggagaggttgcTGTTGACTCTGACTCCCTCTCCTCCAtatcttctctccccttctcccctccctcgctTCATCCTCAGCTGCCTTCCCCATTCTCCTGTACCGTGAGACGCAGCCCACGCCACCATCTTAGGACGACGCTCGCTGGCATGAAATGGAAGTGAGGACCAGAGAGAGCAGGCAAATAATGGTCCAGAACACTGGAAGAGGGCAGAAATGACAGCGAGCAGTAATCCATTGGGAGAAGAGAAGTTGCCCACAAACTACCAACCCATCCCTAGTATTTGCAATGGAACAGGCCCATTACAACAATGTTTGTCCACTACACTCCGACTTGTGCCACAACATTTGAGCATCAGAGCACTTTAGCTGCCTCTGACATGTGGTTGGACCTCTGGCCTGAGTTTAGTTATCCAACAAGGGCCAATCAGGATTGGTTTTCTTTCCTTTCATTAAGCCAATAATAAAGTGGGGTGGTGGcatggaaaacaagagcaaatatCTCAGGATCCAAGATGAACAGAGAAGCACTGATTCTTGGATACACTGTGCTATGAATGAGAAACATGACATGTGCTGTGTACCTACAGTATTTGCTTGCAGCCTCAATAACATCTACACTGAGTGTCCAAAACTTtaagaacatctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatgatcccttaatgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggaggagacaggttaaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041888.1 True 981 mRNA 0.46 3 24067930 24078853

Neighbor

gene id symbol gene type direction distance location
LOC110514815 LOC106580773 coding downstream 87630 23975874 ~ 23980300 (-)
LOC110514697 LOC106580864 coding downstream 218006 23841341 ~ 23849924 (-)
LOC100136261 cats coding downstream 227418 23832402 ~ 23840512 (-)
LOC110514600 ensa coding downstream 287772 23771511 ~ 23780158 (-)
LOC110514588 LOC106580904 coding downstream 297054 23768099 ~ 23770876 (-)
LOC110514831 nes coding upstream 110356 24189209 ~ 24198813 (-)
gpatch4 gpatch4 coding upstream 138652 24217505 ~ 24221727 (-)
LOC110514890 LOC106580679 coding upstream 180228 24259081 ~ 24286618 (-)
LOC110514944 LOC106580659 coding upstream 234702 24313555 ~ 24323816 (-)
LOC110514960 raa2a coding upstream 241891 24320744 ~ 24330914 (-)
G237567 NA non-coding downstream 9318 24058344 ~ 24058612 (-)
G237563 NA non-coding downstream 22259 24045463 ~ 24045671 (-)
G237522 NA non-coding downstream 100223 23965964 ~ 23967707 (-)
G237510 NA non-coding downstream 129412 23937601 ~ 23938518 (-)
G237512 NA non-coding downstream 133102 23934003 ~ 23934828 (-)
G237593 NA non-coding upstream 22371 24101224 ~ 24101468 (-)
G237594 NA non-coding upstream 22999 24101852 ~ 24102101 (-)
G237663 NA non-coding upstream 120795 24199648 ~ 24199944 (-)
G237701 LOC106605310 non-coding upstream 177032 24255885 ~ 24256465 (-)
G237703 NA non-coding upstream 205346 24284199 ~ 24284429 (-)
G237047 NA other downstream 878899 23157109 ~ 23189031 (-)
G235881 NA other downstream 1492941 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2312429 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 2324519 21738845 ~ 21743411 (-)
G237657 LOC106605316 other upstream 101703 24180556 ~ 24183964 (-)
G237832 NA other upstream 442366 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 690709 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 857663 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 1120235 25171287 ~ 25236536 (-)

Expression


Co-expression Network