LOC110505138 (LOC106580604)


Basic Information

Item Value
gene id LOC110505138
gene name LOC106580604
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24204483 ~ 24207629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041909.1
AAGTCTGCTCTCCACTCTCAACCATTTCGAGGAGCGGCAGTGTGTTTGGGGCTTCTTTGTGCCCTCTTAGTTTCAGCCATTATAGGCCTCTGTGTCTACTGTGAGTATGTGGATCATAAAGTATTATGGATTTTGGAGAGGTGTAGAATGACATCGTAGAGTAAAcatgtccttctctctccatagTCAGCACTGCTCTCTCAAAGCACAACAGAAAGTTAGTGGGGGAACTGGCGGCCAATCAGGACCTAATGAATCTCAATAGCAATCTGAGTACAGCCAATCACATTTTGCAGAGTGATTACACCAATGTCAGCACTACAAACCGACGTTTAGCGGCAGAGAAAGAACATGTgtcaagagagagggatagactgAACTGGAATCTTCAGTTCATATTTCAGTTTGATGACTTTCCGGTCCAGAAATATTGTTCACAAAACGTTGGCACAGGAGagagagtgtgtaacTCTTGCCAAGATGGCTGGATTTTGTTCCAATCTAGTTGTTACCTGATTGTGCAATATGACACTCCATGGAAGACCTGGACGGAAAGCCAACAATATTGCAAACAAGAGAAGGCTGATTTGCCCGTCATTGGCAGCCGAGCAGAACAGGAATTCGTTCATAGCCACACTAAAGAATACTATGATAAGTACCATGGGTATTGGATCGGTTTGACGGACAAAGCTGAAGACGGCAAATGGCTCTGGGTTAATGGAGGTCATCAGAATCTGACTGATGGGTTTTGGAACAGTCAAACTGGGGGTGATTGCGTGTTAACTGTCCCAAACAATGCACCATTGGCTAATTGGAATGCTGTACGGTGTGATATGCAGAACAGTTGGATCTGTGAGAGTAGAGCATTAATATGGTCAGATTAAATTGCAGGGACACTCTCTTCAGAGGTATTCTCACATACTGAGCTCATATATTATTGCATCTTCCTTTGAGAATTCAATTAAGTTGTATTCTTCTCATTGAAGGACCCCTGCATCTGCTTGTTGGGGTCAAATCAGATTCACTCAATTCAGGAATTGATTTTAATATAGAATTCACAAAGGAAAACCTTAATTGGCTGACGCAAACACAGGTCTGTTTTGTACGTTTTTGAAATGTTAACAATCAACGATCTGTTTTAATGTAGCTTTGGTGAATTGAAAAAATAATGTTTAGTTTTGAGCTCTCATATAAATCAGGCACATTTTCTTTCACATCAATTACTTCATTATGACAATGAATTAGTGCTCTTATATTGTCTTATTGTATTATGTTTTATACAGTTGTTTCTATGTTCACAATCAAAGATCAACTgtatgtatagtagtgttttagaATAACATTTGTTTTGGCCTTTCATAGATCAGAAATCATATAATATTCAGTTTACAAAGTAAAGCTGGACTTGCCATCCAAGATTTTCTTCCTTCAATTTTTAAACTTCTTAGCATAAGAAGTACAAGTTTAtgatgatgctgtcaccaccatactccaccgtagggatggtgccaggtttcctccagacgtgac

Function

NR:

description
PREDICTED: natural killer cells antigen CD94-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041909.1 True 1530 mRNA 0.40 4 24204483 24207629

Neighbor

gene id symbol gene type direction distance location
LOC110503950 LOC106605316 coding upstream 20227 24105516 ~ 24184256 (+)
rhgb rhgb coding upstream 175054 24019751 ~ 24029429 (+)
LOC110503942 LOC106580754 coding upstream 228679 23957102 ~ 23975804 (+)
LOC110514781 isg20l2 coding upstream 253996 23946808 ~ 23950487 (+)
LOC110514794 LOC106580834 coding upstream 263058 23938950 ~ 23941425 (+)
LOC110514864 LOC106580670 coding downstream 19283 24226912 ~ 24261294 (+)
LOC110514930 LOC106605309 coding downstream 92078 24299707 ~ 24313412 (+)
LOC118947812 m4a8a coding downstream 134933 24342562 ~ 24352353 (+)
LOC110515127 LOC106581815 coding downstream 503854 24711483 ~ 24718629 (+)
LOC110515164 LOC106581855 coding downstream 609946 24817575 ~ 24819244 (+)
G236782 NA non-coding upstream 19827 24184352 ~ 24184656 (+)
G236798 NA non-coding upstream 102128 24102140 ~ 24102355 (+)
G236762 NA non-coding upstream 103625 24065964 ~ 24100858 (+)
G236752 NA non-coding upstream 151360 24052892 ~ 24053123 (+)
G236743 NA non-coding upstream 172635 24031635 ~ 24031848 (+)
G236838 NA non-coding downstream 7752 24215381 ~ 24215807 (+)
G236842 NA non-coding downstream 14644 24222273 ~ 24222648 (+)
G236844 NA non-coding downstream 16350 24223979 ~ 24224206 (+)
G236871 NA non-coding downstream 84368 24291997 ~ 24292241 (+)
G236753 NA other upstream 148816 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 275396 23908750 ~ 23932207 (+)
LOC110514613 hormad1 other upstream 409288 23780400 ~ 23795199 (+)
G236372 LOC106581434 other upstream 853668 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 855105 23346880 ~ 23349378 (+)
G238034 NA other downstream 541776 24749405 ~ 24750383 (+)
G238047 NA other downstream 558037 24765666 ~ 24766363 (+)
G238050 NA other downstream 567650 24775279 ~ 24775945 (+)
G238540 LOC106582009 other downstream 987658 25195287 ~ 25199234 (+)
G239026 NA other downstream 1333140 25540769 ~ 25541613 (+)

Expression


Co-expression Network