gpatch4 (gpatch4)


Basic Information

Item Value
gene id gpatch4
gene name gpatch4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24217505 ~ 24221727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594018.2
tattggatgccaaccgccgttaaacctcatcgaagaagAATAAGAAGCGTAGTCTTTTCCGGTGCTGTGTCAGCCTGCTGAATTTACCTCATGGTTCCAGTCGAACTGTGAACCGTTTTTATTTATCCCTTTTGAACAACAATGTGAGTCTAGATAACCAGATGAGAAAAAATGGCAGAAACTGTTCAGGAAAAGAGCCGTGGACTGAAGTTTGCAGAGCAACAGCTACTGCGTCATGGCTGGGAACAAGGTAAAGGTCTTGGTCGGCAGGAGAATGGTATATCTGAGGCTATCAAAGTCAAAGTGAAATGTGACAAGGGAGGAGTGGGACATCGTCAAGGGGAGCAGTTCACCTTCCATTGGTGGGACCATGTCTTCAACAAAGCATCTTCTAGCCTGGAAGTGGAATCTGGCGAGAATGGTGTGCAGGTGAAGaagttggtggaggaggaagaggaaggaatgATCTCCAACAAGAAGCCAACGAAAGCCATGTTGGGAAGAGACAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGactggagcagccagagcagaaGTCCTCCAGTACAGatgacagcagcagcagctctgACGATGAGGACCAGAGACTGGACCTCTCCAGCACCACCAAGCTATCAGACGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCCCACAAAGGAGCCAGACACGGCCTTACCATGAGTGCCAAGCTAGCCAGACTGGAGCAGCAGGAGCAAGAGTTCATGGCAAAGTATGGCAAGAAAAACCAACTAGCGGCTGCAACACCAGATAGCGTCACTACCCAGCCAGCTGCCCAGATCCCTGAGGATGAACTGACCCATGAGACCCCGGGGAAGAAGACCAAAAAGAAAAAGAGGAAGAATCACTCAGAGGATACCCGTGAGAATGTGGCTGAAGAGAACGCTGATTCTGCTGTTGTCTCCAGAAGTACCAACAtgaaaataaaggtgaaaaataagAAAAAGAAGGAAAGTTTAAAGGAGAACACTGGGGAGGTGGCGGTGGTTCCTGTAGAGGAGGACGATAATACAGCAGACAATGCTCAGCCAACCAAGAGGAAACGTTCAAAACAGAGGAAGGTGTTGGAAGAGGGCGAGAGCTGTCATCTAAATGGAGAGGTGTGTGAAACTGATATCATTTCTATAGAGAGTGAAGCCGGAGGAGGCTGTGAAGACGCGTCGGAGGGAGAAGGTGCCACTCGGCAACAGACGGACTCCTACACTACTACCAAGAAGAAGAAGTCCTCCAAGAACAAAGAGGTGGCTGAGGAGATGGAACACTCTAAAGATGGAGAAACCAACCAATCAGAAACTGTGGCGGACTCCCCtccaaaaaagaaaaagaaacggGATGGAGCAATAGAGAGAACAGTGGAGGAGGAACctaaaataaaaggtaaaaaaaataaatgcaaaGCGGTCAAGCAGACCGTAGAGGACAGTTTGCACGATGTATTGGACTCCATACCTCTAAACAAGAAAAAGAAGAAAGCTAAACAACAGGAACCAGTTTGATGAGGACTCGTGGTTGCCTTGTTGGAAAGGAAACAGGTCAGGAATTTGGGCCAGCGCTCTAATACATCTTATAAACACATGAAACCATCGAATGAAATGCAGTATATTTTTAATTAACGGCTTATTGCAACACCATGCAAAAAGGATGTTTTGTTTCTTGTCAACATATTTATTTGTATGGAAAGATTCAACTACAGACTattaagaaaatatatatttagtcGTCAACTAGTGTTTTTATACAGCTTCTTGTATGGTGGTCTTGTATTGTTCATATTCTCAACATGGATGTTTTAAACAATGTGATATCAACATCAGATATGAGGTTGCTATGTATGAGCACAGTAATGTATTTTCTTTTCTCAATAAACTTTCCTTACTACTTTGTGTGATGAGGTACAAGTGCCAATTAAAGCTGCTGATTTAGAAGTATTACATTGTTTATAAAACAGTGATTTTATTAAAAGCGGAACCTATGAAAGCCCTACAC
>XM_021594020.2
gcggtaatgcaacatttattggatgccaaccgccgttaaacctcatcgaagaagAATAAGAAGCGTAGTCTTTTCCGGTGCTGTGTCAGCCTGCTGAATTTACCTCATGGTTCCAGTCGAACTGTGAACCGTTTTTATTTATCCCTTTTGAACAACAATAAAAAATGGCAGAAACTGTTCAGGAAAAGAGCCGTGGACTGAAGTTTGCAGAGCAACAGCTACTGCGTCATGGCTGGGAACAAGGTAAAGGTCTTGGTCGGCAGGAGAATGGTATATCTGAGGCTATCAAAGTCAAAGTGAAATGTGACAAGGGAGGAGTGGGACATCGTCAAGGGGAGCAGTTCACCTTCCATTGGTGGGACCATGTCTTCAACAAAGCATCTTCTAGCCTGGAAGTGGAATCTGGCGAGAATGGTGTGCAGGTGAAGaagttggtggaggaggaagaggaaggaatgATCTCCAACAAGAAGCCAACGAAAGCCATGTTGGGAAGAGACAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGactggagcagccagagcagaaGTCCTCCAGTACAGatgacagcagcagcagctctgACGATGAGGACCAGAGACTGGACCTCTCCAGCACCACCAAGCTATCAGACGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCCCACAAAGGAGCCAGACACGGCCTTACCATGAGTGCCAAGCTAGCCAGACTGGAGCAGCAGGAGCAAGAGTTCATGGCAAAGTATGGCAAGAAAAACCAACTAGCGGCTGCAACACCAGATAGCGTCACTACCCAGCCAGCTGCCCAGATCCCTGAGGATGAACTGACCCATGAGACCCCGGGGAAGAAGACCAAAAAGAAAAAGAGGAAGAATCACTCAGAGGATACCCGTGAGAATGTGGCTGAAGAGAACGCTGATTCTGCTGTTGTCTCCAGAAGTACCAACAtgaaaataaaggtgaaaaataagAAAAAGAAGGAAAGTTTAAAGGAGAACACTGGGGAGGTGGCGGTGGTTCCTGTAGAGGAGGACGATAATACAGCAGACAATGCTCAGCCAACCAAGAGGAAACGTTCAAAACAGAGGAAGGTGTTGGAAGAGGGCGAGAGCTGTCATCTAAATGGAGAGGTGTGTGAAACTGATATCATTTCTATAGAGAGTGAAGCCGGAGGAGGCTGTGAAGACGCGTCGGAGGGAGAAGGTGCCACTCGGCAACAGACGGACTCCTACACTACTACCAAGAAGAAGAAGTCCTCCAAGAACAAAGAGGTGGCTGAGGAGATGGAACACTCTAAAGATGGAGAAACCAACCAATCAGAAACTGTGGCGGACTCCCCtccaaaaaagaaaaagaaacggGATGGAGCAATAGAGAGAACAGTGGAGGAGGAACctaaaataaaaggtaaaaaaaataaatgcaaaGCGGTCAAGCAGACCGTAGAGGACAGTTTGCACGATGTATTGGACTCCATACCTCTAAACAAGAAAAAGAAGAAAGCTAAACAACAGGAACCAGTTTGATGAGGACTCGTGGTTGCCTTGTTGGAAAGGAAACAGGTCAGGAATTTGGGCCAGCGCTCTAATACATCTTATAAACACATGAAACCATCGAATGAAATGCAGTATATTTTTAATTAACGGCTTATTGCAACACCATGCAAAAAGGATGTTTTGTTTCTTGTCAACATATTTATTTGTATGGAAAGATTCAACTACAGACTattaagaaaatatatatttagtcGTCAACTAGTGTTTTTATACAGCTTCTTGTATGGTGGTCTTGTATTGTTCATATTCTCAACATGGATGTTTTAAACAATGTGATATCAACATCAGATATGAGGTTGCTATGTATGAGCACAGTAATGTATTTTCTTTTCTCAATAAACTTTCCTTACTACTTTGTGTGATGAGGTACAAGTGCCAATTAAAGCTGCTGATTTAGAAGTATTACATTGTTTATAAAACAGTGATTTTATTAAAAGCGGAACCTATGAAAGCCCTACAC

Function

symbol description
gpatch4 Predicted to enable nucleic acid binding activity. Orthologous to human GPATCH4 (G-patch domain containing 4).

NR:

description
G patch domain-containing protein 4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594018.2 False 2047 mRNA 0.45 7 24217505 24221711
XM_021594020.2 True 2040 mRNA 0.45 7 24217505 24221727

Neighbor

gene id symbol gene type direction distance location
LOC110514831 nes coding downstream 18692 24189209 ~ 24198813 (-)
LOC118947709 NA coding downstream 138652 24067930 ~ 24078853 (-)
LOC110514815 LOC106580773 coding downstream 237205 23975874 ~ 23980300 (-)
LOC110514697 LOC106580864 coding downstream 367581 23841341 ~ 23849924 (-)
LOC100136261 cats coding downstream 376993 23832402 ~ 23840512 (-)
LOC110514890 LOC106580679 coding upstream 37354 24259081 ~ 24286618 (-)
LOC110514944 LOC106580659 coding upstream 91828 24313555 ~ 24323816 (-)
LOC110514960 raa2a coding upstream 99017 24320744 ~ 24330914 (-)
mapip LOC106580651 coding upstream 109799 24331526 ~ 24336143 (-)
LOC110514914 LOC106605242 coding upstream 114997 24336724 ~ 24342873 (-)
G237663 NA non-coding downstream 17561 24199648 ~ 24199944 (-)
G237594 NA non-coding downstream 115404 24101852 ~ 24102101 (-)
G237593 NA non-coding downstream 116037 24101224 ~ 24101468 (-)
G237567 NA non-coding downstream 158893 24058344 ~ 24058612 (-)
G237563 NA non-coding downstream 171834 24045463 ~ 24045671 (-)
G237701 LOC106605310 non-coding upstream 34158 24255885 ~ 24256465 (-)
G237703 NA non-coding upstream 62472 24284199 ~ 24284429 (-)
G237705 NA non-coding upstream 63830 24285557 ~ 24285790 (-)
G237714 LOC106605309 non-coding upstream 78466 24300193 ~ 24300653 (-)
G237723 NA non-coding upstream 83955 24305682 ~ 24309011 (-)
G237657 LOC106605316 other downstream 33541 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 437370 23771511 ~ 23780158 (-)
G237047 NA other downstream 1028474 23157109 ~ 23189031 (-)
G235881 NA other downstream 1642516 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2462004 21744425 ~ 21755710 (-)
G237832 NA other upstream 299492 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 547835 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 714789 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 977361 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1601629 25822812 ~ 25825108 (-)

Expression


Co-expression Network