LOC110514890 (LOC106580679)


Basic Information

Item Value
gene id LOC110514890
gene name LOC106580679
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24259081 ~ 24286618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594039.2
ctgtccctacctctccctccttcctgctgtctttctctcttcagCGATACATGTGCAGGGAGAGACTGTGACGCAGCCATTCCAGAGCGTGAGCCAAAGGCACACAGACAGCACTGATCCTCCTCCCTATACTCCACAGGGGCACCCCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCAGAGAGGTCCGGCTGTGCAGACACACGCACTGCTCCACCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCTCAGCCAACCACCTGAACCACTTACTGGATGTCCACTATGGAAACGGGTCAGAAACGAACCAGCCGCGGCGGAGCCACCCCCCAGCTCACCCCAACTCGCATTTCCCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATCGACAAGGTGCGCTCGCTGGAGATAGAGAATGCTGGGCTGCGGATGCGCATCACTGAGTCCGACACCGAGATCAGCCGTGAGGTGACGGGCATGAAGGCGGCCTATGAAACGGAGCTTGCCGACGCCCGAAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGAAAAGTCAAGGAGGAGTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCGGACCTGGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTCTGTCCACCGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTGAAGGCCCAGCTAGCCAAGCTGGAGACCGGTCTGAGCGACGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCATCAAGGAGGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCCGAGGCCCTGATAGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTACAAGGAGGAGATCGAGAAGACCTACACCTCCAAGCTGGAGAACGCCCGTCACTCTGCAGACAGGAACAGTACCCTGGTGGGGGCGGCCCACGAGGAGCTGCAGCAGACTCGCGTGCGGATGGAGGGCATGTCCTCTCAGCTCAGCCAGCTGCAGAAACGGCTGGCGGCGAGTGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGAGACATGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTACCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCAAACCCGAGTCACCGTGTCCCGTACCACCGGCTCGGGCTCAGGACACACACTTACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGGTCGCATGATCCAGTCCACCAGTGGCAGCCGCAACTCCTCAGGCACGGCCAGCGCCAAGAAGAGGCGTCTCAATGACAACGACAGTGAGACCTCCAGCCTGGCGGGGGGTGCCGTGACGCGTACACGCATCGCCCAGCAGGCCTCCGCGAGCGGCCGCGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTTTGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTCCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCAGCAGCACTCCCATCGTCTACAAGTTCCCCCCCAAGTTCAACCTCAAGGCAGGACAGACTGTCACAATTTGGGCTTCAGGAGCAGGTGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCACCCTGATTAGCGCCAATGgggagGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCGTGTGGCCAGCCGTCTGATAAGAGCTGTGCCACCTCAGGGGTGTCCAGCGGCTCCTGCTCCGTCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCTCTCTTCATAATGGGCAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAAAGCCAGACAGGCACCACCTTACCTAAGACATCAACCTCCCACACATGGATGGGAGATACTTTCTTACTCTTTATTTGCTTTGTTTCATATATGATCCGTCTTATTTTGTATGCCATAATCGGCAGGTTAGATTGACTTTGGTGTTTGGCGAAGGGCTTAGGAGCTGCCTATTCACTTCAGATATATGAGCTTGTATATTCTAGGTATATTGCATGTGGACTGGGCAGATACTTCCACTGTCTTGGGCCATATCTAGGGAGAGAGGACCAGAAAGCACCTTTACCATTACAGTGGACTTTGATCCATAGTGGGCTTTCACGTCTCGTGTCTAAGCTGTCAACCGTAAACACGCACAGCCGCAAATCCTGCTATGAATCTGTGGACATGAGGGCTGGAATCAGGGTTCTCTGCCCTGGTATTCCACATACACTACCATAGAATGTCCTAAATGTCACTAAATAGAGATGGAGTTAACCCCCTCAGACTCCTGGAGGCTTATGGGGGTTTGTATTAGACTGAGCGATGGGATTGGTCATTCTAAAGCCATAGTTACAAAGAGGAGCTCAAACTTGACACTGTCATCAAGGTGTTTATATTTCTGAACACAAGACAGTAGTTTTTTGTGGAATGACATGTCAATTATTACTCATGAATCAGTCAGACTACTATGGTGATATGGATATAGGTTCCAAATTGTGACTTGTTTTCTCAGGCTTGAAAGAGGTATGTAGTTGTTAAAGAAAGGATACCAAAACGAGATGAGCACACAGATATGGGGAAGACAAAGTAGTACTGTATTGTAAGGTCTTGACATGACTGACCTCTAGAAATAGTTTCCTCTTAGAGGATTACCTCTAACGTTGTCTgacttgacctctgacctcacctTTTGTCTTGTATGAAAAAACAACAGTTACTGTAGGGCAACTCATCAGATCTAGACACACATATGATTTCTTTGCCAGATGGATTATAGTAATGTTACTGTAACATTCTATTATGGTTTTGCATTTTTAGGGTTGAGGGAATGTGGCAGCTTGAGAAATAGATGTTCTGGTTTGTCAGACTCTAAAGACAGAACTTGTCTGAGTTGGAAGTGTGTTGATTTAAATGAAAGTACAATGCTTAACTTCTCAGGACAGCATTGCAACAATGTGTACATTCTGTACCTTTTGTATCAGGTGTAGTGTCAGAAAGAATGGGTACAGATAGTTAAAGATAGTAAGCATGAGCCTGAACGGCCCATAGGGGTAGTTGGACTATATGGTATTATCTGGCCAAAAGTTTACTTTATTAATGAACTACACAGTATGTTGGTGCCATATTTTCAGTGTAATCAATTACTGTGTTTACATTTAAATGGTGCATAAGAACTCGCTTTGACAAGGTCAGAAAGAGTATTTACTTGAGAAGGAAACCTAAATGAGACTTAACATCAATTCCTCATGATATGATGCCAATCCTCTGTATTTTTGTATTGTAGTCTTGAGACTATTGTCCTCTCTCCCACTAAAGGAttataatggctgtgtttttctgagcTTAGTGGCTTTGCTTTTgggtattttttgggggggtgggggggcttcTTATTTCTTTACAACTATGTCAAAAATGAGCTATAATCATCTACAAAGCTTTATCCACTTCATATTAGAGGCATGTACTAGTCTGGCAGCCTTTTTTTATAGAATGTATAAGCAGTAAAAATTTTCTGAGAATACTTGATAGTTTTTGCAacattgtgttttttttgtactTCATACACATTTCTATCACTACCAAATAGGAGAAAAGGTGCTTATTCTCACTGTTAACCGAAAAACCTTAGAGAAGCTCAAACTGTCCAAGTAAAAAATGATTATTTCTTTTCTCATCATGTCTCAAGTGCCTTATTGATACCGGCTAGTGATCATTGAAAATTGTATTCTTTTTGCACTATGAAGTGTCAATTCCAAAGATATGCGGTATTGTCTTTAAAGACAATGGAAATGATAGATTTACAGAGTATGTTGGCTATACTTGCATATTTGTACGGAAATTGTCCTGGTACATAATGCTCAATTGAATTTGTAAGAAATGATTATGCCTAATATGGAAAATCCATGCAATCCAGGTAGAATGTAGTAGTGATTTACAATGTTTTGCCTTTTATGTTCGAGACCAGTAAACTTATTTTCCCAACACA
>XM_021594042.2
CCAAAGAAGAAGACGTTGGCGGGCGCAGCAATGTAATTGATCCAATTTCCAGATGGCTGTAACATTATATGCCATGTAGTTTACATCAGTGTTTCAAACAAATTGTAGGCTACTTAAATTTAACATCCGGATGACAAATGCGTAGGATTTTGAAGTGGCTTTCTTTAATCTGTAAACAAACCAAAAAGTCCCCACCTGGTTTTGGGGCACCCCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCAGAGAGGTCCGGCTGTGCAGACACACGCACTGCTCCACCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCTCAGCCAACCACCTGAACCACTTACTGGATGTCCACTATGGAAACGGGTCAGAAACGAACCAGCCGCGGCGGAGCCACCCCCCAGCTCACCCCAACTCGCATTTCCCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATCGACAAGGTGCGCTCGCTGGAGATAGAGAATGCTGGGCTGCGGATGCGCATCACTGAGTCCGACACCGAGATCAGCCGTGAGGTGACGGGCATGAAGGCGGCCTATGAAACGGAGCTTGCCGACGCCCGAAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGAAAAGTCAAGGAGGAGTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCGGACCTGGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTCTGTCCACCGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTGAAGGCCCAGCTAGCCAAGCTGGAGACCGGTCTGAGCGACGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCATCAAGGAGGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCCGAGGCCCTGATAGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTACAAGGAGGAGATCGAGAAGACCTACACCTCCAAGCTGGAGAACGCCCGTCACTCTGCAGACAGGAACAGTACCCTGGTGGGGGCGGCCCACGAGGAGCTGCAGCAGACTCGCGTGCGGATGGAGGGCATGTCCTCTCAGCTCAGCCAGCTGCAGAAACGGCTGGCGGCGAGTGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGAGACATGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTACCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCAAACCCGAGTCACCGTGTCCCGTACCACCGGCTCGGGCTCAGGACACACACTTACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGGTCGCATGATCCAGTCCACCAGTGGCAGCCGCAACTCCTCAGGCACGGCCAGCGCCAAGAAGAGGCGTCTCAATGACAACGACAGTGAGACCTCCAGCCTGGCGGGGGGTGCCGTGACGCGTACACGCATCGCCCAGCAGGCCTCCGCGAGCGGCCGCGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTTTGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTCCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCAGCAGCACTCCCATCGTCTACAAGTTCCCCCCCAAGTTCAACCTCAAGGCAGGACAGACTGTCACAATTTGGGCTTCAGGAGCAGGTGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCACCCTGATTAGCGCCAATGgggagGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCGTGTGGCCAGCCGTCTGATAAGAGCTGTGCCACCTCAGGGGTGTCCAGCGGCTCCTGCTCCGTCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCTCTCTTCATAATGGGCAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAAAGCCAGACAGGCACCACCTTACCTAAGACATCAACCTCCCACACATGGATGGGAGATACTTTCTTACTCTTTATTTGCTTTGTTTCATATATGATCCGTCTTATTTTGTATGCCATAATCGGCAGGTTAGATTGACTTTGGTGTTTGGCGAAGGGCTTAGGAGCTGCCTATTCACTTCAGATATATGAGCTTGTATATTCTAGGTATATTGCATGTGGACTGGGCAGATACTTCCACTGTCTTGGGCCATATCTAGGGAGAGAGGACCAGAAAGCACCTTTACCATTACAGTGGACTTTGATCCATAGTGGGCTTTCACGTCTCGTGTCTAAGCTGTCAACCGTAAACACGCACAGCCGCAAATCCTGCTATGAATCTGTGGACATGAGGGCTGGAATCAGGGTTCTCTGCCCTGGTATTCCACATACACTACCATAGAATGTCCTAAATGTCACTAAATAGAGATGGAGTTAACCCCCTCAGACTCCTGGAGGCTTATGGGGGTTTGTATTAGACTGAGCGATGGGATTGGTCATTCTAAAGCCATAGTTACAAAGAGGAGCTCAAACTTGACACTGTCATCAAGGTGTTTATATTTCTGAACACAAGACAGTAGTTTTTTGTGGAATGACATGTCAATTATTACTCATGAATCAGTCAGACTACTATGGTGATATGGATATAGGTTCCAAATTGTGACTTGTTTTCTCAGGCTTGAAAGAGGTATGTAGTTGTTAAAGAAAGGATACCAAAACGAGATGAGCACACAGATATGGGGAAGACAAAGTAGTACTGTATTGTAAGGTCTTGACATGACTGACCTCTAGAAATAGTTTCCTCTTAGAGGATTACCTCTAACGTTGTCTgacttgacctctgacctcacctTTTGTCTTGTATGAAAAAACAACAGTTACTGTAGGGCAACTCATCAGATCTAGACACACATATGATTTCTTTGCCAGATGGATTATAGTAATGTTACTGTAACATTCTATTATGGTTTTGCATTTTTAGGGTTGAGGGAATGTGGCAGCTTGAGAAATAGATGTTCTGGTTTGTCAGACTCTAAAGACAGAACTTGTCTGAGTTGGAAGTGTGTTGATTTAAATGAAAGTACAATGCTTAACTTCTCAGGACAGCATTGCAACAATGTGTACATTCTGTACCTTTTGTATCAGGTGTAGTGTCAGAAAGAATGGGTACAGATAGTTAAAGATAGTAAGCATGAGCCTGAACGGCCCATAGGGGTAGTTGGACTATATGGTATTATCTGGCCAAAAGTTTACTTTATTAATGAACTACACAGTATGTTGGTGCCATATTTTCAGTGTAATCAATTACTGTGTTTACATTTAAATGGTGCATAAGAACTCGCTTTGACAAGGTCAGAAAGAGTATTTACTTGAGAAGGAAACCTAAATGAGACTTAACATCAATTCCTCATGATATGATGCCAATCCTCTGTATTTTTGTATTGTAGTCTTGAGACTATTGTCCTCTCTCCCACTAAAGGAttataatggctgtgtttttctgagcTTAGTGGCTTTGCTTTTgggtattttttgggggggtgggggggcttcTTATTTCTTTACAACTATGTCAAAAATGAGCTATAATCATCTACAAAGCTTTATCCACTTCATATTAGAGGCATGTACTAGTCTGGCAGCCTTTTTTTATAGAATGTATAAGCAGTAAAAATTTTCTGAGAATACTTGATAGTTTTTGCAacattgtgttttttttgtactTCATACACATTTCTATCACTACCAAATAGGAGAAAAGGTGCTTATTCTCACTGTTAACCGAAAAACCTTAGAGAAGCTCAAACTGTCCAAGTAAAAAATGATTATTTCTTTTCTCATCATGTCTCAAGTGCCTTATTGATACCGGCTAGTGATCATTGAAAATTGTATTCTTTTTGCACTATGAAGTGTCAATTCCAAAGATATGCGGTATTGTCTTTAAAGACAATGGAAATGATAGATTTACAGAGTATGTTGGCTATACTTGCATATTTGTACGGAAATTGTCCTGGTACATAATGCTCAATTGAATTTGTAAGAAATGATTATGCCTAATATGGAAAATCCATGCAATCCAGGTAGAATGTAGTAGTGATTTACAATGTTTTGCCTTTTATGTTCGAGACCAGTAAACTTATTTTCCCAACACA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090342 regulation of cell aging biological_process
GO:0060047 heart contraction biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K12641 LMNA; lamin A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594039.2 False 4518 mRNA 0.50 13 24259081 24282799
XM_021594042.2 True 4583 mRNA 0.49 14 24259081 24286618
Loading

Neighbor

gene id symbol gene type direction distance location
gpatch4 gpatch4 coding downstream 37354 24217505 ~ 24221727 (-)
LOC110514831 nes coding downstream 60268 24189209 ~ 24198813 (-)
LOC118947709 NA coding downstream 180228 24067930 ~ 24078853 (-)
LOC110514815 LOC106580773 coding downstream 278781 23975874 ~ 23980300 (-)
LOC110514697 LOC106580864 coding downstream 409157 23841341 ~ 23849924 (-)
LOC110514944 LOC106580659 coding upstream 26937 24313555 ~ 24323816 (-)
LOC110514960 raa2a coding upstream 34126 24320744 ~ 24330914 (-)
mapip LOC106580651 coding upstream 44908 24331526 ~ 24336143 (-)
LOC110514914 LOC106605242 coding upstream 50106 24336724 ~ 24342873 (-)
LOC110514995 LOC106580635 coding upstream 74865 24361483 ~ 24378365 (-)
G237701 LOC106605310 non-coding downstream 2616 24255885 ~ 24256465 (-)
G237663 NA non-coding downstream 59137 24199648 ~ 24199944 (-)
G237594 NA non-coding downstream 156980 24101852 ~ 24102101 (-)
G237593 NA non-coding downstream 157613 24101224 ~ 24101468 (-)
G237567 NA non-coding downstream 200469 24058344 ~ 24058612 (-)
G237714 LOC106605309 non-coding upstream 13575 24300193 ~ 24300653 (-)
G237723 NA non-coding upstream 19064 24305682 ~ 24309011 (-)
G237732 NA non-coding upstream 62488 24349106 ~ 24349359 (-)
G237828 NA non-coding upstream 227493 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 228577 24515195 ~ 24515433 (-)
G237657 LOC106605316 other downstream 75117 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 478946 23771511 ~ 23780158 (-)
G237047 NA other downstream 1070050 23157109 ~ 23189031 (-)
G235881 NA other downstream 1684092 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2503580 21744425 ~ 21755710 (-)
G237832 NA other upstream 234601 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 482944 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 649898 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 912470 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1536738 25822812 ~ 25825108 (-)

Expression

LOC110514890(LOC106580679) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

LOC110514890(LOC106580679) Expression in each Bioproject

Bar chart with 21 bars.
LOC110514890(LOC106580679) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network