LOC110514944 (LOC106580659)


Basic Information

Item Value
gene id LOC110514944
gene name LOC106580659
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24313555 ~ 24323816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594060.2
GGGCAAAGGGCGGGGCTAGAGACTCGACGTTACGTCGCTCGGAAATGGCACATTACAAGTGGTCGGGAAGAGGAGTCGAAAGTTTGTGAAAGATAGTTTGTTGTCTTTCAAAATTTCACAGTCAAATAGGATACATATAATCGAATAATATATTACAGGTGTTGATATAGTGCGAATGTACCTTTTTGACTCTGTTGTTCGTTCTAAGGAAGCGGTCGGTCGCGAGATAAATGGTCAAGAAGTTTTGTCGAATTGAACAGAAACGACCACGGGAGGGTTTGaacatttcacatttccataggTAGAAACGTTGAAGAAATGACGAATAGAGAAGACGAATATGACTATCTTTTCAAAGTGGTGCTGATTGGGGACTCTGGAGTGGGGAAGAGTAACCTGCTGTCCCGCTTCACCCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATTGGGGTGGAGTTTGCCACGCGCAGCATCCACGTGGAAGGCAAGACTGTCAAGGCCCAGATCTGGGACACGGCAGGACAGGAGCGCTACAGAGCCATCACCTCAGCGTACTACCGTGGGGCAGTGGGGGCTCTGCTGGTGTACGACATCGCCAAGCACCTGACGTATGAAAACGCTGAACGCTGGCTGAAGGAGCTGCAGGACCATGCTGACAGCAACATCGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTCAGGGCTGTGCCCACGGATGAGGCCAAGGCCTTGGCAGAGAAGCATGGACTGTCTTTCCTGGAGACCTCGGCGTTAGACTCCTCTAATGTGGAGCTGGCTTTCCAGACTATTCTCACAGCCATCTACAACATTGTGTCCCAGAGGCAAATGACGGGCCGCAGCGACGCCGACTTCTCGCCCAACTCCAATGTGGTGCCGATCACAGTGCAGCCCACGCAGAACGCTGCCAAGTCAAGTGCCTGCTGCCAGAACAACTGAGGCCTCACCACCGTCAGGGACAGACGAGTAGACGGAGAGGGAGGACTGGGAGACAAGGAGGAGAAACCTAGAGACAAGGATACAGGCAGACAGAAACAAGTGGAGAGATACAcagggagacagaaggacagggaGACCAAGGGGGCAACCAAGTGTTTCCATAGCCTCTATGCATTGTTTCCTCTGAGAAGTCTGTCCCCATCTAATTCAATAAGCTTTATGGTTATGCCTTGGCTTGATTGGTTTTAAATATGAAAGAGGACATGAATTAATTTACATGAATTGAGAAATTTAGCATGTTTGGATATGGTCCTCCATATCTTTCCACAGTTTGTCTCACTCATTGtgaactgacccccccccccccccccaccattgtCAGATCAATTTAATAAGCCTGTGAACGCACCCAATTCCCCAGCACAGAGAAGGGGCAATAAGATTCGGCAGTGAAGACCTGATTTCACTGAAATGTAACCCCCACCTCTCCATTGTCAGGCAGCTCCTCCCAAACATATTTCAGTTTGTCCCAATTATATTTATTTCACACTATATTGAGGTCTTGTTTGACCAAAGGGTTTGTGCTAACATGCAACACTGGGTGGGTTTGATCTGAAGCTGCTTACTATATATGACGGGTGTCCTCTTTTTGTTCTTGATTTCACTGGTAATCAAATCCTTTTATGATATAGTTATTAAATGTAACTACTCTTGGCTAATGGGGAACCGAGGAGTTAAGCCATCTTATCCCAAATGTTCCTGGTCGAATGTCAGGCCAATCTAAACTGCACAAAATGGGGGTCCGTGGAGAACTTTTCATGTCCATTTTATCAGTGCTCTTCGACTTCCCTTTTAGTCTTTACACAAAATAAAGTTTGCTCTTCAGATTTTTTTGTGATCAACATTTTCCTCCCTGTTGAAACTCATTACAAAGTACTTTGCACAGCAATATTTCTCACATAGGCCTATTCTTTGTTAGCAAAAAAGACAGTCTAGCTCTTTTGGGTGTTATCCTTTTATCACCGTGAACCATCCTTTTCCGGTTTAACTGAATTGCTGTCGCTTTCTCCGTGACTGTGGAGATATGTGAGGGTGATGAGGGGATATTGGTTGGAGTGGTGGTCATATACCATGGTCTGAGTGGAGCCCTCCCTGCGGCCTGCTGTCCTAGATGGCTGGACAGCTCATGTTGCAAGAGATGGGTAGTAAGGGCACTCAGCCCTGCTGCTTCTCTGATGTACACAAGATGGCTTGTTTTACTGTAAATGAACTCCTCCACTGTATGTAACTGGAACCGTATCATGCCTTCTGGGATATCCCTTAAGAGTTTCCCAGGTCTCTTTGTATGGTTATATTTTCTCTTTTTTCTGGGTGTGTGTAGTTCTGTTGGTAAGAGTAAGCACTAGGGAGGATACTAGCCCTTCTAGATCTGCTAGTTTGGCAAAAGAGGGGAGGTGTGGGGAAAGTTTGAGGGTGCCATTACCACAGCCGAAGGTCAACAGTGTAAACAGTCATTATCCTGCTGAGTTTTTTTTTCCCTTGTGGCATTCCCAGTAGTAAATTGGGATGTAAAGGTTAGGTTTTTAAAATGTTAATTCTCATGTGTACATTTTAGATTGCACATgtataaataaatgtaatttctTAA

Function

NR:

description
PREDICTED: ras-related protein Rab-11A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594060.2 True 2617 mRNA 0.46 5 24313555 24323816

Neighbor

gene id symbol gene type direction distance location
LOC110514890 LOC106580679 coding downstream 26937 24259081 ~ 24286618 (-)
gpatch4 gpatch4 coding downstream 91828 24217505 ~ 24221727 (-)
LOC110514831 nes coding downstream 114742 24189209 ~ 24198813 (-)
LOC118947709 NA coding downstream 234702 24067930 ~ 24078853 (-)
LOC110514815 LOC106580773 coding downstream 333255 23975874 ~ 23980300 (-)
mapip LOC106580651 coding upstream 7710 24331526 ~ 24336143 (-)
LOC110514914 LOC106605242 coding upstream 12908 24336724 ~ 24342873 (-)
LOC110514995 LOC106580635 coding upstream 37667 24361483 ~ 24378365 (-)
LOC110514973 LOC106580622 coding upstream 49985 24373801 ~ 24378081 (-)
LOC110515008 LOC106605295 coding upstream 65225 24389041 ~ 24391115 (-)
G237723 NA non-coding downstream 4544 24305682 ~ 24309011 (-)
G237714 LOC106605309 non-coding downstream 12902 24300193 ~ 24300653 (-)
G237705 NA non-coding downstream 27765 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 29126 24284199 ~ 24284429 (-)
G237701 LOC106605310 non-coding downstream 57090 24255885 ~ 24256465 (-)
G237732 NA non-coding upstream 25290 24349106 ~ 24349359 (-)
G237828 NA non-coding upstream 190295 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 191379 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 202968 24526784 ~ 24526988 (-)
G237838 NA non-coding upstream 203484 24527300 ~ 24527563 (-)
G237657 LOC106605316 other downstream 129591 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 533420 23771511 ~ 23780158 (-)
G237047 NA other downstream 1124524 23157109 ~ 23189031 (-)
G235881 NA other downstream 1738566 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2558054 21744425 ~ 21755710 (-)
G237832 NA other upstream 197403 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 445746 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 612700 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 875272 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1499540 25822812 ~ 25825108 (-)

Expression


Co-expression Network