LOC110514914 (LOC106605242)


Basic Information

Item Value
gene id LOC110514914
gene name LOC106605242
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24336724 ~ 24342873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594051.2
TTTCGAAATGCGAAATGCCACGTCTGGTACaccattacgaaacttctatttgatcaaataatcCTCACATAGCAAATAAAATATACAcatttttgttgaccaaattcgacacttaATGACCATACAAACAAATCGTATtttcgtggacagattttgggctgagtaaaacctctcgcttcacctcttcctctctggatgTAGTGAATTTGAAGAGGAGTAAAGATGGCGGAGAACAGCGGCACAGATCCCACTGTGGATTCCAACGTTGTTGAAAATGCTGCCTCAGACGGGACCATGATTGTGGTCACGGTAAAAACTCCGAAAGATAAAGAGGAGATCGCGATATCGGAAGATTCTTCTGTCGCACAGTTTAAAGAGGAGATATCCAAAAGGTTTAATGCCAAGCAGGACCAGCTGGTGTTGATTTTTGCTGGAAAAATCTTAAAGGATGGAGACACACTGAACCAACACGGCATCAAGGACGGACTCACTGTTCACCTAGTCATCAAGACTGCTCCCAAGGCTACAGTTGGTGGCACATCCCAGTCCTCGGCATCCAGCTCTGGGACCCCCCAGGCCAACAGCAGCGTTAACCCCAGCGCAGCGCCCAATGACAGCACAACACCAGGCACTGGGCCTACCCCAACCTCCACACAGCCACCCAACTTACTGAGTGGGTTTGGTGACCTATCTAGCCTGTCAGGCATGGGCATGGGCTCGGCCAACTTCATGGAGATGCAGCAGCAGATGCAGAGACAGCTGATGTCCAACCCGGAGATGCTGTCTCAGATCATGGACAACCCTTTGGTGCAGAACATGATGTCCAACCCAGACCTGATGAGGCAGATGATTGTGACAAACCCTCAGATGCAGCAGCTGATGGAGCGCAACCCTGAGATCTCCCACATGCTCAACAACCCTGAACTTATGAGACAGACCATGGAGTTGGCAAGGAACCCAGCCATGATGCAAGAGATGATGCGTAACCAGGACCGGGCGCTTAGCAACCTGGAGAGCATCCCTGGGGGCTACAACGCCCTCCGGAGGATGTACACAGACATCCAGGAGCCTATGTTCAGTGCCGCTAGAGAGCAGTTTGGAAACAATCCCTTCTCTGCTTTGGGGGGCAACTTGGACTCTGGCGTGCAGCCCTCCAGAACAGAGAACAGGGAGCCCTTACCAAACCCCTGGGGACCCCCTGGAACGACCCCCTCAGAGATCAGGGGGACTGGTGCCTCCACGACAACAACAACCTCTGCTGGCGGGACTGCACCCAGTGCCTCCAACCCCCTGGGCATCAATGCCTCTGGGCTGGGCAACGGTGTGTTCGGTAGCCCTGGCATGCAGAGTCTGATGCAGCAGATCTCTGAGAACCCCCAGCTGATGCAGAACATGCTGTCTGCGCCCTACATGCGCAGTATGATGCAGTCGCTGGCGCAGAACCCTGACCTCGCCTCGCAGGCAATGCTGAACAACCCCCTCTTTGCCGGAAACCCCCAGTTACAGGAACAGTTGAGACATCAGATGCCGGTCTTTCTCCAACAGATGCAGAATCCTGAGTCACTGTCTGTGATGACTAACCCCCGGGCCATGCAGGCTCTCATGCAGATCCAGCAGGGCCTGCAGACCCTACAGACGGAAGCCCCAGGACTCATGCCCAGTTTGGCTCCTGGTGGGATCCCAGTGATTCCTCCAACCACAGGAGGCAGTGTGGCCCCAGAAAATCTTCCTCCCCCAACACAGGGCTCAAATCCCACTGCTGCCACTAACCCAtcccaacagcagcagcagctcatGCAGCAGATGTTACAGATGTTTGCTGGAGGAGGAGGCGGCTCATCGACCCAGACCGTAACCCCGGAGGTGCGGTTTCAGCAGCAGCTGGACCAGCTCAGCGCCATGGGCTTCATCAACCGTGAGGCCAACCTGCAGGCCCTCATCGCCACGGGGGGAGACATCAACGCTGCCATTGAGAGACTGCTGGGCTCCCAGCCCTCCTAACTCTCTTAGCCCCCTGAGATTactgggagagaggggttaggTAGGGGTGGTGAGGGCTGGAGTGGGAGTTTACAAATGAACACAGTCCTTCATCACAGTCTGACAAGCCCCTCAGATAGACTCAACTGAATTCCAATTACTATTCATCTCTTTGGCTGATCTGTGAAAAGTAGGAAAGATATGGGGGCAGGAAGTGGGTGTTCAGATTCAAGTTTCTATTGGAGAGATCTCATATCAACCCTGTGGAATGATGACATCGCTGCAAAATGACGCCACCACTAACATGACTACTTCCTCTGTTGACTATGGGAGATTATTTCTGAAATGACTGCCCATTTGCTGGACATGCATGAGGTTGCCGACTTAACCCATCTTAATGGATTGTGTTTAGCCGGTAACGAGTTGAAATTTGGAGGAATATGAGTGTTGAAATCATAGGTCAGAGGAATCACTCATTCTTTCATTGTCATGAGAACCTGCTTGTTTTTACTTAATTTCACTCTATCATGCCTGATTGACTAGTATTTATTACAGGAGCTGTAGAAGTTACCTTCTCTTTTCTTTACCACTCACCTTCAGTTTACCTTCTGCTTTAATCATTTCTTGACATCCTTCAAAACTGATCCTGGCTGTTGGATTCTCTGTTTGAGCACTATAGCGCCCCAGGTTCAGCTGTTTGCTTACACTTTCAGCTTTTTTGGAAGGGATGATTTTCAGGTTGGAAGGTCAGGCAAGGTAGCTTGGTGAGCTCTGTAGTTAATGCTACATTGAGTCAATGAATGCTATTGAGTGTAAATTATTCAACCGTTTAGGCTCTGATTATGGGTTGTGATAAGACCTCAATGTTTTAATCTGAGCAATGATAAAAATGCAGACACCTTTTACGTTAACCATTTTGTGTATTTTCATACAAGCAGCGGTTTAGTGCCTgataaaaatgtatgtattggGTTCAGCAATATATTCCAAAATAATTTGTGAaatctataatgacaaagtgtacTAATAGCATAGAGAATAGTTTTTCTTAAACCCATACATATTAGTTGCAGTACCTACAGTTAAAGAACATCTGTTCAGCGCTGCCTTTTTCTTGGAGTCACTCTGTTATCTATTCTAATAATACCTTTCAAGAAACATGATCAAGTGTGTGGTGGTCATTCATTTAGTTCAGAAGCATGGTCTACACCAGTAGTCTTCACTCCTGATCCTGGAGGGATGCACCCTATGCTGAATTCAGATTCTCAATCCTCAAAATGCACACTTGTTCACCCCACCTCAGATTTAAAAGCACTGGACTGGACTGCAGTGAGAAATGTGGTGGAAACTTAATTTAGCCCAAGCTTACGCCAATCCGCACCCTTTTGGCAAAGTGAAATTGGAATTGAGTGCAAGCCCAGCGCAAACAGATGTGATTCAGCTATTCATGATCTTGATGAGTAGTTAATGTTGCAGACTTGGCCTGTTCACACTGACTGCAACCCCCTAGGACCAGGTGTGATTAACACTAGTCTACATTGTGTATGTTATGAAATTATATGAACTTGATATGGATGATTTGTTCAACTTGTATGGgaattgtgtgtagtttgagagGTGGGAAAGTTATAGTGGTGACCATGCATATTTGGTAGATCATAAAAGGACCAAGCTTGAAAATATAAATTGTGAACTGAAATAAACATTGAAATATCTTAATGGCAATTAAGCATTAAGCTGTTTTAACATTCACCAGAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04523 UBQLN, DSK2; ubiquilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594051.2 True 3739 mRNA 0.48 11 24336724 24342873

Neighbor

gene id symbol gene type direction distance location
mapip LOC106580651 coding downstream 581 24331526 ~ 24336143 (-)
LOC110514960 raa2a coding downstream 5810 24320744 ~ 24330914 (-)
LOC110514944 LOC106580659 coding downstream 12908 24313555 ~ 24323816 (-)
LOC110514890 LOC106580679 coding downstream 50106 24259081 ~ 24286618 (-)
gpatch4 gpatch4 coding downstream 114997 24217505 ~ 24221727 (-)
LOC110514995 LOC106580635 coding upstream 18610 24361483 ~ 24378365 (-)
LOC110514973 LOC106580622 coding upstream 30928 24373801 ~ 24378081 (-)
LOC110515008 LOC106605295 coding upstream 46168 24389041 ~ 24391115 (-)
LOC110515020 LOC106581398 coding upstream 57831 24400704 ~ 24498985 (-)
LOC118944659 LOC106581364 coding upstream 140363 24483236 ~ 24484420 (-)
G237723 NA non-coding downstream 27713 24305682 ~ 24309011 (-)
G237714 LOC106605309 non-coding downstream 36071 24300193 ~ 24300653 (-)
G237705 NA non-coding downstream 50934 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 52295 24284199 ~ 24284429 (-)
G237701 LOC106605310 non-coding downstream 80259 24255885 ~ 24256465 (-)
G237732 NA non-coding upstream 6233 24349106 ~ 24349359 (-)
G237828 NA non-coding upstream 171238 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 172322 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 183911 24526784 ~ 24526988 (-)
G237838 NA non-coding upstream 184427 24527300 ~ 24527563 (-)
G237657 LOC106605316 other downstream 152760 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 556589 23771511 ~ 23780158 (-)
G237047 NA other downstream 1147693 23157109 ~ 23189031 (-)
G235881 NA other downstream 1761735 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2581223 21744425 ~ 21755710 (-)
G237832 NA other upstream 178346 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 426689 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 593643 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 856215 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1480483 25822812 ~ 25825108 (-)

Expression


Co-expression Network