LOC110514995 (LOC106580635)


Basic Information

Item Value
gene id LOC110514995
gene name LOC106580635
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24361483 ~ 24378365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594076.2
TGCTATCATTTGTTCAACAACTTGTCTAACCACCACCCAAGTTTAGCTTCTGTCGATGGGTGTGTCACTTTAACTGTAATATGAGACCAATAGGAAGAGAAAAACAGATCGGCTAAATCATTTGCTTTTCTTCCTCAAACTAAAGCGAATGAAAAGtTCTCACTGTGAGGCCAGCAGGGATTCACTCTAGTTGAGAGTGTGAGCAAGGAAGCAGGCCACCGTCCAACAATACCTGAACAGCTCTACATGTTATACTGTTATTTGTTGTGCACTGAATAATAACAATACCAGCAAAGATGGCCGGCCAGCTACAGAAGATCGTAGCAGAGAAGAAGAACGTGGTAGAGACTGTAATGGAAGTGTTTGAACAGGGAGCTGAGGTGGTGGCCAGTATCGCAGGTGACCTCTTCCCTGTTTTCGCCATCGCTGCTCCCATCGTGAAATTGGCCCTGGACAATGTGGAGAGCAAGGAAGCTGCGTTCATGAAGGAGCAGTTCCAGAAAGTTCGTGAACGCCTGGAGGTGGTTTCAGAGGAGATGCAGCGTATTAACGAGGAGATCAAGAAGAGCGGAGCAGACGCTGCCTACTTTTCTGTAGAGGAGAACATCTCCAACCAGTTCCGCAAGTACATGGACATCCTCAATGCCAAACCCAAGTTTCGTGAGGTCAAGAAGAAGCTTTTCATGGAGCATTTTGTCAAAACAGGTGGCGACAAAAACCTACACACCCTCTATAGTGCCGTGACGGGAGACAACTTCTCTGGAGAGTCAGTGTTGGAAATTACTCTTAACTATGAAGAGAAAAGTCGACGCGCAATGGAAGACTTCTGTGCCAGGTTGAAGAAACTCTTTTGCATAGGCCTCATCGCTCTGATGGGCTACACCGCTCTAAAGGACTGCGATGACGAAGAGAAGCTTCTTCAAGACTGGGGTGAAAAGATGAAGGATGTACAGGTGAAAATGAATGCTGTCATTGAGGACTGCATCACCAGCTTCCCCAAGCAGTCTGAACTGGATTCCCGGAGGTTGGTTAGGGACCATTCTGACCTGAGCAACCAGCAGCTGGCAGACGCCATTTTGGAGAAGCTGAAAAGAAAGTATGACTGGGTGTGCTGGTCTGTCCGTATATTCAGCTCCCCTTCGGGCCTGTTCTCCAACAAAAAAGACATCCAGTGCCCCACAGGAAAAAATCGCTTTCAGGTGCCAGCGACAGACGAGAAGCTGAACGTCATGGTCTCCTACAGTGCCTCGCCCGAGCCTCTGAACAAGGCCCACATCCAGCAGCTGATCCAGGGTCAGAAGAAACTCACCGTAGTGGGTACAGCTGAGCTCCTGTTTGAGCAGTTGCCAGGTCCATGTGCAGTCCACACGGTCAAGACTTGCAAAGACCTGGCCTGTGTCTGGAGCTTTGCCGAAGAGCTACACTACTGGGAGGAGCACAAGAACTTCTATGTTTGTGTTCACTACAATTGACTTTTTCTTACTTAAAAATGAATTAATAATTAGCCTTAGCTCCCAATGTTATATTCAGTCCAATTTGATCTTTACACTAAGACTGACATTGCCAagtactttctctctttctcagttgAGTTCTGATCCCCAGCTATACTAATGAGGAGGAACATAGGCTAACATTTATTATAAGGCATGATACTTACCAAAGACTGTTTTACCTGTTAATCTATTCTTTGTAATGTTTTTCTTTTATGTATGCCCCCTACTAAAATAGTGTAAATAAAATCTGCTTGACATGTTCAAATAAACCACACATAATAACTGTGATAGTCATGA
>XM_036972913.1
GGGTTCCTGTTGGAatgcagagaggggatggaggagttCCAACGGGGGAGtgacgagggagagagacagagagagagacagagaagagagagagagactacatatACATCCCAACACTAGGAGGCTGGTGCTCAGAGGCACAGTTGGACTGTTGGATAACTAGACTGCACCCCCCTGTATACTTTATTGGACTATCAGAGtTCTCACTGTGAGGCCAGCAGGGATTCACTCTAGTTGAGAGTGTGAGCAAGGAAGCAGGCCACCGTCCAACAATACCTGAACAGCTCTACATGTTATACTGTTATTTGTTGTGCACTGAATAATAACAATACCAGCAAAGATGGCCGGCCAGCTACAGAAGATCGTAGCAGAGAAGAAGAACGTGGTAGAGACTGTAATGGAAGTGTTTGAACAGGGAGCTGAGGTGGTGGCCAGTATCGCAGGTGACCTCTTCCCTGTTTTCGCCATCGCTGCTCCCATCGTGAAATTGGCCCTGGACAATGTGGAGAGCAAGGAAGCTGCGTTCATGAAGGAGCAGTTCCAGAAAGTTCGTGAACGCCTGGAGGTGGTTTCAGAGGAGATGCAGCGTATTAACGAGGAGATCAAGAAGAGCGGAGCAGACGCTGCCTACTTTTCTGTAGAGGAGAACATCTCCAACCAGTTCCGCAAGTACATGGACATCCTCAATGCCAAACCCAAGTTTCGTGAGGTCAAGAAGAAGCTTTTCATGGAGCATTTTGTCAAAACAGGTGGCGACAAAAACCTACACACCCTCTATAGTGCCGTGACGGGAGACAACTTCTCTGGAGAGTCAGTGTTGGAAATTACTCTTAACTATGAAGAGAAAAGTCGACGCGCAATGGAAGACTTCTGTGCCAGGTTGAAGAAACTCTTTTGCATAGGCCTCATCGCTCTGATGGGCTACACCGCTCTAAAGGACTGCGATGACGAAGAGAAGCTTCTTCAAGACTGGGGTGAAAAGATGAAGGATGTACAGGTGAAAATGAATGCTGTCATTGAGGACTGCATCACCAGCTTCCCCAAGCAGTCTGAACTGGATTCCCGGAGGTTGGTTAGGGACCATTCTGACCTGAGCAACCAGCAGCTGGCAGACGCCATTTTGGAGAAGCTGAAAAGAAAGTATGACTGGGTGTGCTGGTCTGTCCGTATATTCAGCTCCCCTTCGGGCCTGTTCTCCAACAAAAAAGACATCCAGTGCCCCACAGGAAAAAATCGCTTTCAGGTGCCAGCGACAGACGAGAAGCTGAACGTCATGGTCTCCTACAGTGCCTCGCCCGAGCCTCTGAACAAGGCCCACATCCAGCAGCTGATCCAGGGTCAGAAGAAACTCACCGTAGTGGGTACAGCTGAGCTCCTGTTTGAGCAGTTGCCAGGTCCATGTGCAGTCCACACGGTCAAGACTTGCAAAGACCTGGCCTGTGTCTGGAGCTTTGCCGAAGAGCTACACTACTGGGAGGAGCACAAGAACTTCTATGTTTGTGTTCACTACAATTGACTTTTTCTTACTTAAAAATGAATTAATAATTAGCCTTAGCTCCCAATGTTATATTCAGTCCAATTTGATCTTTACACTAAGACTGACATTGCCAagtactttctctctttctcagttgAGTTCTGATCCCCAGCTATACTAATGAGGAGGAACATAGGCTAACATTTATTATAAGGCATGATACTTACCAAAGACTGTTTTACCTGTTAATCTATTCTTTGTAATGTTTTTCTTTTATGTATGCCCCCTACTAAAATAGTGTAAATAAAATCTGCTTGACATGTTCAAATAAACCACACATAATAACTGTGATAGTCATGA

Function

NR:

description
uncharacterized protein LOC110514995

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594076.2 False 1793 mRNA 0.46 3 24361483 24373454
XM_036972913.1 True 1837 mRNA 0.47 3 24361483 24378365

Neighbor

gene id symbol gene type direction distance location
LOC110514914 LOC106605242 coding downstream 18610 24336724 ~ 24342873 (-)
mapip LOC106580651 coding downstream 25340 24331526 ~ 24336143 (-)
LOC110514960 raa2a coding downstream 30569 24320744 ~ 24330914 (-)
LOC110514944 LOC106580659 coding downstream 37667 24313555 ~ 24323816 (-)
LOC110514890 LOC106580679 coding downstream 74865 24259081 ~ 24286618 (-)
LOC110515008 LOC106605295 coding upstream 10676 24389041 ~ 24391115 (-)
LOC110515020 LOC106581398 coding upstream 22339 24400704 ~ 24498985 (-)
LOC118944659 LOC106581364 coding upstream 104871 24483236 ~ 24484420 (-)
LOC110515051 LOC106581796 coding upstream 187348 24565713 ~ 24576410 (-)
LOC110515085 LOC100380645 coding upstream 224256 24602621 ~ 24619117 (-)
G237732 NA non-coding downstream 12124 24349106 ~ 24349359 (-)
G237723 NA non-coding downstream 52472 24305682 ~ 24309011 (-)
G237714 LOC106605309 non-coding downstream 60830 24300193 ~ 24300653 (-)
G237705 NA non-coding downstream 75693 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 77054 24284199 ~ 24284429 (-)
G237828 NA non-coding upstream 135746 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 136830 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 148419 24526784 ~ 24526988 (-)
G237838 NA non-coding upstream 148935 24527300 ~ 24527563 (-)
G237840 NA non-coding upstream 150109 24528474 ~ 24528781 (-)
G237657 LOC106605316 other downstream 177519 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 581348 23771511 ~ 23780158 (-)
G237047 NA other downstream 1172452 23157109 ~ 23189031 (-)
G235881 NA other downstream 1786494 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2605982 21744425 ~ 21755710 (-)
G237832 NA other upstream 142854 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 391197 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 558151 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 820723 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1444991 25822812 ~ 25825108 (-)

Expression


Co-expression Network