LOC110514973 (LOC106580622)


Basic Information

Item Value
gene id LOC110514973
gene name LOC106580622
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24373801 ~ 24378081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594071.2
TTATTTACCCAGATTTTCTATCATTTGACAAACTGAACTTGTTTGAGAAGTATAGGCTACCTCTGAGACATATGAAAAAGTGAGGAACTGGTTTTGAAAGATCCACTTTGTTTGTGCACTGACAAGGCAAACAGGTGAAATTCAAGTGCAATTTGAGATGCTGGGATACCATTGTTAACGGATGTGGTCTTGCTGGTATCTCATCACTCAAGGATGTGGTCTCAATAAGAGTTCTTTAGGCTTGTTTCTTCCCCCAGTAGAATGGAAAATAATCGGTAGAAATAAGATTTTATTCAGCACTCCTATGTTCAAAGGATTTGAGAGAAGTTGAGTGATATTGAAAAGAAGGCAAAATACCTCCTGTTGGTTACAAAAATAGTTTGGGGCTCGCCTTTTTCTTCCTCTTAATTGTACCCTTGGATTAGCATTCTCACAGTCAACTGTTTTTGTTTTACAAGTGAAGACTTGACATATCCTAAACCAGGACAATTTCTCAACATCAACATAGTTGGAGAATCTTTGAAGACCTTGTTGGCCATTGTTACTTTGTGATAGACCCCTCAAAATGACCAGTGTGGCAGAATGGCTCGTGCAGAACAGAGGCAAGATCGAGAAGGGAGTGGAGATCATGGGACAGGCCTCCGCAGTCCTGGCAGCCACTGTGGGCCAGCTCCATCCCGTCCTTGAGGCTGTGTTCGTAGCCTCCTCTGAGATCCTCAGCAACCCTGAAGGGCAGGATGCCCGCTACCTGACTGAGCAGTTCAGCATGGTCAACCAGAAACTGGAAGGCATCCAGGCTGAGATCGAACAAATCGCCCTGGAGCTGCAGAGGACCTCCTTGAATAAGCAGAACTTTGACCGTGAGGCACAAATGCTCAGCCAGTACGAAAAGTTCCAGGACTTTGTCAACGCCAAGCCCAAGTTCAAAGAGAAGAAGATGGAGAAGTTCCTCAGCCATTATGAGAACACGGACACGGACTTGAACCTGGACGCGCTCTATAATGCCGTTACCGGGGACAATACCTCAGGTGACCCCATGTTGGAGACAGTGGTTTCCACAGAACAAAGGAGTAGAAGGGCGGTAGAAGATTTCTGCGCCAGGCTTAAGAAGCTCTTTGTGGTGGGCATCATTGCTGTCATGGGTTACGCCAGCCTCAAGGAAGGGGTTGTGGGGGATGAGATGGTGAAGAAGTGGCAGGAGCGTATGGAAGATGTTGAGAACCGCATGAAAGCAGCGGTGGACGATTGCACTGAAAACTTTGCGGATCAGGCCAAACTGGACATGGAACATCATCTTCAGGAGAAACCTGGCAGTGTTGACCTTGACTTCACCAAATCCCTATTAGACACCCTTATTAAGAAATTTGACTGGGTGAGCTGGTCTATCAGGGTCTTCAATGACAAGGAGCGCATTTTCTTTTTCAACTGGCTAGCTGGAAAGAAGTACCATGGAAGTAGAGGAGGAGCTAATTACTTTGATGTGTTGACCAAGAACAACATCAAAGTGGTGATCTCGTTCAGTGTTCAGCCTAAGCCTATCAACAAGGGTCAGATCCAGCAAGAGATTGAGGGGCAGAAACTGAAGGGGAACATGATGAATGTGGCTCAGGTCCTCAGCAGAAGTCTCCCCAACTGCTTGGTGCATGCTGTCAGCCACTATAAGGAAGTGGTGGAGTCCAACAACTTCCAAGAGGATTGTTATTACTATGGAAAACACAAAAAAGCTTACCTATGTGTTCATCCTGAGTAGCCTTTTGTTACACAGTGCAATGGAACATAGAGTAGTTATAATGGGGAAAACTACAAATACAATTCATGAATGTTTATAACTGAGTTTAGAGGTGTTTTTATTGATATCGCAAACCTAGCTGATGCTTTAGCTAGTGGTTGTGTAAAATGTAATCTCTTGTTACAGACTgcaacatttttatttgtttattggcCTTATAAATTTTTGTGTAGTTTGTGATAATTTAatccaggggtgtcaaacacatGGCCTGCAGGGGccagattttttggggggaaacaATGGACAGTGGACTGTCTTATGCAAATTTCACGGCAAAGAAATATAACCAATTTTTAGTACGGCGCCTCTATCTCTTTGAAGACTGAATGCGGCCCCTTGGGCAAAATGAGTTTGGCACACCTGGTTTAAACTATCAGGATTTGTATATGTGTATGAATGGACATATATGAGACATTTTATGCCAGGCTGTGGCTATCTACTCAACAACAATGCCAACATATGAGAACTTAGTACTTCTTCCTACCAAAGAGAATAGTAAGATACCTTATTTTACCTGCATTCCAGTATTTCATGATGACCATACTGTAAATTAGCACACCAGCCAGCGTAATAATGTGTTATGTAAGCTTTCAGCAAACAACCATTTCTCCTCATCAATGTACTGAGGACTTACTCAAGCTCTGTTGGAAAATGCTGTTGATAGATGCATCACACTGTCCAAATCTATATCCTTACAACATTACATCTCTGTCTATATTCACACATTTGATATCCTTATAATTTCTCATGTTTATGGTCTTCTTTATTCATAATAAACCACAATATAAAGGA

Function

NR:

description
uncharacterized protein LOC110514973

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594071.2 True 2584 mRNA 0.43 2 24373801 24378081

Neighbor

gene id symbol gene type direction distance location
LOC110514914 LOC106605242 coding downstream 30928 24336724 ~ 24342873 (-)
mapip LOC106580651 coding downstream 37658 24331526 ~ 24336143 (-)
LOC110514960 raa2a coding downstream 42887 24320744 ~ 24330914 (-)
LOC110514944 LOC106580659 coding downstream 49985 24313555 ~ 24323816 (-)
LOC110514890 LOC106580679 coding downstream 87183 24259081 ~ 24286618 (-)
LOC110515008 LOC106605295 coding upstream 10960 24389041 ~ 24391115 (-)
LOC110515020 LOC106581398 coding upstream 22623 24400704 ~ 24498985 (-)
LOC118944659 LOC106581364 coding upstream 105155 24483236 ~ 24484420 (-)
LOC110515051 LOC106581796 coding upstream 187632 24565713 ~ 24576410 (-)
LOC110515085 LOC100380645 coding upstream 224540 24602621 ~ 24619117 (-)
G237732 NA non-coding downstream 24442 24349106 ~ 24349359 (-)
G237723 NA non-coding downstream 64790 24305682 ~ 24309011 (-)
G237714 LOC106605309 non-coding downstream 73148 24300193 ~ 24300653 (-)
G237705 NA non-coding downstream 88011 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 89372 24284199 ~ 24284429 (-)
G237828 NA non-coding upstream 136030 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 137114 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 148703 24526784 ~ 24526988 (-)
G237838 NA non-coding upstream 149219 24527300 ~ 24527563 (-)
G237840 NA non-coding upstream 150393 24528474 ~ 24528781 (-)
G237657 LOC106605316 other downstream 189837 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 593666 23771511 ~ 23780158 (-)
G237047 NA other downstream 1184770 23157109 ~ 23189031 (-)
G235881 NA other downstream 1798812 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2618300 21744425 ~ 21755710 (-)
G237832 NA other upstream 143138 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 391481 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 558435 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 821007 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1445275 25822812 ~ 25825108 (-)

Expression


Co-expression Network