LOC110515008 (LOC106605295)


Basic Information

Item Value
gene id LOC110515008
gene name LOC106605295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24389041 ~ 24391115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110515008
TAGTGATATCTGAATTGATCATTTTATCTGTGTTACTCTGCAGGGAAACTCACAGACTGAGCCCCCATAAGGGGTTGAATGTCAATTGTTATTAAAGGGCACTCAACCACTTTACTTGAGAGCAATGTGCAGCTTTTCCGTCCTGATTTTGAGCATGATTTCTGAAGACCGGTACACCTCAACAAGCATTGACACATAGTTCAACTTTCATATTGATTCTCCCTCCAGAGCATGGCAAGTCCTCTGGAGAAGATGGTGGCCCAGAAGAAAAACGCCATCGAGGCTGTGATGGAGAGTTTTGAGGTGAGGGGCTGAGGTGTGAGGCAGCCGCCCCTGTCCTACGACTAGCCCTGGACAACGTGAAGAGCAAAGAGGTCTGCTATGTCAAAGAGCAGTTCCTGGCGGTGAGGAACAAGCTGGACGTActgttcacccagctggaggATAATGACTGTGTGATTAGGAAGGGCCGGCTGGATTCCCAGTACTTCTCGGTGGAGGAGAGCATCAGGAACCAGTTCCGGAATTACATGGACATTCTGGAGGCCAAGCCACAGTTTCAGGAGGTCAAGAAGAGGCTGTTTCTGGAGCACCGGTGGGGAGATGAACCTGTATGTGCTGTATGATGCTCTGATGGGCACCAACAGCTTTGGGGAGTCCATCTTGGAGGTGGTGGAGAGGTATGAGGCGAGAAACAGGCGCCTACTGGAGGACTTCTATGTGAGGATGAAGGAGATCCTCTACCTGGGCCTACTTGCCCTGCCGGGCCACTGTGCCCTCACCAGGAGACCAGATGAGGAACAGGAAACCATCCATCACTGGAGCACCAAAATCAGGGAGGTGGAATCAAAGATGAAGGCATGCATCGGGGCCTGCGTAGCAGCCTTCCCTGAACAGGCTTGCCTTGATGCCCAGCATATTCTCCAGGAAAAAGAGGAACGCAATCTTCAGGACACGGCTCAGGAAGTACAGGAATTCCTCACCAGGAAATACAACTGGGTGAGCTGGTCGGTCCGACTGGTCAACCACTCTGGCAGCAACTATTGGAACTGGCGTGCCAGGGACCACTTCCAACAAATGGCCGGTCAGAACTTGTTTGAGGGGCTGCAGGTGAATGATACCTTACCTGGTGGTTTCCTACAGCACCGGTCCCCAACCGGTGCCACGCGACTGCATCCGACAACTGATGGAGGGGCCAGAGAAGAAGGGCGGTGCCCAGGCCATGATGGAGGTCTTGGGGAAGCAGATGGTGAGGTTCGTGGTGCATGCTGTCAGTAACCACAAAAAGAGTTAGGCCAACTGGAGCTTCCCGGAGGACTGCCACTACTGGGAGAGGCACAAGAATGTGGCGCTGTGTGTACACTCATAGTGACGCTGATAGAGGTGCAACAAGTCAGACAAACAGGGATCATTATGTTATCAACCTGAGGGGTTATTCTAAATTCTGAATTGACCACCTTAAAGAGGATGTGTGGGGAATTATGGTAAAATTGTGATGAGGTTTTGTGAATATACCATGCAGTTTGTCCTAGCAAGAAACTTTGGTTGCAATTAGATTCACTGTATTGAAATCTGAATGTATTGCTAATTTGAGGCCGTGTTACATAGCCCAGTGTTTGCAGAGTATTTAATTAACTGTATATGCATTTTATTATAATTGACTAACTCCTACCATAGCTTATGACCAGATGTTACTCAATACTCTCTCATAGTTCAATAGCTTAACTCAATGGATCGTGGATGTGAAGTGATGTTGAATTGACTAATCTTTCTAATTCGTACTAATTCAGTCATAATAAAAACATCATCTAAATTCTACATCTGTCATTATGCTTCGTGACAATAAACGGCAACACATCAGCTGTTATTGgatgtatatatgagtgtgtct

Function

NR:

description
PREDICTED: SE-cephalotoxin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110515008 True 1891 mRNA 0.48 2 24389041 24391115

Neighbor

gene id symbol gene type direction distance location
LOC110514995 LOC106580635 coding downstream 10676 24361483 ~ 24378365 (-)
LOC110514973 LOC106580622 coding downstream 10960 24373801 ~ 24378081 (-)
LOC110514914 LOC106605242 coding downstream 46168 24336724 ~ 24342873 (-)
mapip LOC106580651 coding downstream 52898 24331526 ~ 24336143 (-)
LOC110514960 raa2a coding downstream 58127 24320744 ~ 24330914 (-)
LOC110515020 LOC106581398 coding upstream 9589 24400704 ~ 24498985 (-)
LOC118944659 LOC106581364 coding upstream 92121 24483236 ~ 24484420 (-)
LOC110515051 LOC106581796 coding upstream 174598 24565713 ~ 24576410 (-)
LOC110515085 LOC100380645 coding upstream 211506 24602621 ~ 24619117 (-)
LOC110505156 NA coding upstream 255244 24646359 ~ 24647543 (-)
G237732 NA non-coding downstream 39682 24349106 ~ 24349359 (-)
G237723 NA non-coding downstream 80030 24305682 ~ 24309011 (-)
G237714 LOC106605309 non-coding downstream 88388 24300193 ~ 24300653 (-)
G237705 NA non-coding downstream 103251 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 104612 24284199 ~ 24284429 (-)
G237828 NA non-coding upstream 122996 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 124080 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 135669 24526784 ~ 24526988 (-)
G237838 NA non-coding upstream 136185 24527300 ~ 24527563 (-)
G237840 NA non-coding upstream 137359 24528474 ~ 24528781 (-)
G237657 LOC106605316 other downstream 205077 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 608906 23771511 ~ 23780158 (-)
G237047 NA other downstream 1200010 23157109 ~ 23189031 (-)
G235881 NA other downstream 1814052 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2633540 21744425 ~ 21755710 (-)
G237832 NA other upstream 130104 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 378447 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 545401 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 807973 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1432241 25822812 ~ 25825108 (-)

Expression


Co-expression Network