Fish Transcriptome and Expression Database

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model fish

XLOC_021632 (CR352228.2)

Basic Information

Item	Value
gene id	XLOC_021632
gene name	CR352228.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	20471755 ~ 20471870 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042937
TCTTTCATTCAGCtctttgcaactctcacatggtcacccactgaagctaagcagagctgtgcCCGGTTAGtaactggatgggagaccacatgggaaaagcTAGGTTACTGCCGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108189

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00042937	True	116	rRNA	0.50	1	20471755	20471870

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_021630	tnnc2	coding	upstream	44456	20422661 ~ 20427299 (+)
XLOC_021629	TNNC2	coding	upstream	51512	20408227 ~ 20420243 (+)
XLOC_021628	NA	coding	upstream	110329	20345310 ~ 20361426 (+)
XLOC_021627	AL953864.1	coding	upstream	284016	20187625 ~ 20187739 (+)
XLOC_021626	tnnc1b	coding	upstream	359159	20110086 ~ 20112596 (+)
XLOC_021633	dpm1	coding	downstream	41234	20513104 ~ 20517692 (+)
XLOC_021634	adnpb	coding	downstream	46634	20518504 ~ 20530056 (+)
XLOC_021635	camkvl	coding	downstream	91909	20563779 ~ 20636740 (+)
XLOC_021636	uba1	coding	downstream	168614	20640484 ~ 20664621 (+)
XLOC_021637	arhgef3l	coding	downstream	197279	20669149 ~ 20684086 (+)
XLOC_021614	NA	non-coding	upstream	995604	19473396 ~ 19476151 (+)
XLOC_021613	CR388168.1	non-coding	upstream	1252815	19217528 ~ 19218940 (+)
XLOC_021608	CR388168.2	non-coding	upstream	1289367	19177891 ~ 19182388 (+)
XLOC_021651	NA	non-coding	downstream	1001232	21473102 ~ 21474482 (+)
XLOC_021656	CR847529.1	non-coding	downstream	1151865	21623735 ~ 21623849 (+)
XLOC_021659	CR548634.2	non-coding	downstream	1309707	21781577 ~ 21783450 (+)
XLOC_021660	NA	non-coding	downstream	1434183	21906053 ~ 21914926 (+)
XLOC_021666	NA	non-coding	downstream	2100288	22572158 ~ 22593289 (+)

Expression

Co-expression Network