LOC110515020 (LOC106581398)


Basic Information

Item Value
gene id LOC110515020
gene name LOC106581398
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24400704 ~ 24498985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594088.2
ACATATACATCCCAACACTAGGAGGCTGGTGCTCAGAGGCACAGTTGGACTGTTGGATAACTGGACTGCACCCCCCTGGATGCTTTATTGGACTATCAGAGGTGAAGACTTCACATATCCCAAACCAGGACAATTTCTCAACATTAACATATTTCAAGATTCTTTGAAGACCTAGTTGGACGTTAGTCTGTGACAGAGCCCTCAAAATTACCAGTATGGCAGAATTGCTCATGCAGAACAAGGACAAGATTGAGAAGGCGGTGGAGATCATGGGACAGGCCTCTGCGATCCTGGCAGCCACTGTGggccagctccatcccatcctggAGGCTGTATTCTTAGTATCCAATGTGATCTTCAGCAACCCAGAAGGAGAGGACGCCCGCTATCTGACTAAACAGTTCAGCATGGTCAACCAGAAACTGGAAGGCATCCAGGCTGAGAACAACCAAATCGCTGTGGAGCTAGAGAATATCACCATGAATAAGCAGAACTTTGACCGTGAGGCTAAAATTCTCAGCCAGCATGAGAAGTACCAGGACATTGTCAACGCCAAACCAGAGTCAAAAGAGAAGAAGATGGAGAAGTTCCTCAGCCATTATGAGAACACGGACGCAGACTTGAACCTGGACGCCCTCTACAATGATCTTACTGGGGACAATATCTCAGGTAAGCCCATGCTGGTTTCCACAGAACAATGGAGTAGAAAGGCAGTAGAAACGTTCTGTGCCAGGCTTAAGAAGCTCTTTGTGGCGGGCATCATTGCTGTCATTGGTTACGCCAGCCTCAAGAAAGGGTTTATGGTGGATGAGATAGTGAAGAAATGGCTGGAGCGTTGGGAAGATGTTGAGAACCGCGTGAAAGCAGTGTTGGATGATTACACTGTAAATTTACACAAAAGAGCCAAAAAGGATATGGACGACCAGCTTAAGGAGAAACCTGGCAGTGTTGAACTTGACTTCACTAAATCGATATTGAAAACCCTTAAAGAGAAATATTACTGGGTGAGCTGGTCTGTCAGGGTCTTCAATGACAAGGAGCGCCTTTTCTGTTTCAACTGGCTAGTTGGAAAGAAGTACCATGGCAGTGAGGGAGGAGCTAATTACTTTGAAGTGATGACCAAGAACAACATCAAAGTGATGATCTCTTTTAGTGTTCAGCCTAAGCCTATCAACGAGGTTCAGATCCAGCAAGAGATTGAGGGGCAGAAGCTGAAAAGGAACATGATGGATGTGGCTCAGGTCCTCAGCAGAAGTCTCCCCAACTACCAGGTGCATGCTGTCAGCTACTATAAGGAAGTGGTGGAGTCCAACAACTTCCAAAAGGATTGTTTCTACTATGGAAAACACCAAAACGTGCACCTATACATTCATGCTGTTTAGGCTTTTGTTTCACAGGGCAGTTATAATGAGAGTAGTTATAATGATTAAAACTACAAATAAAATCATTAAGTTTAGGTGTTTGTATTGATATCTAAAACATAGCTGATGGTTTAGCTGGTGATTGTGGGAAATGTACTCTCTTGTTTATTTGTTTTGTAGGTTTGTGTAGTTTGTGATAGTTTAAACTATCAGGATTTGTATCTGTATAAGAATGGATATGAGTCATTTTATGTCAGGCTGTGGGTATCTACTGAACAGTGACAAAGTATGAGAATGTGATACTTCCTTCTACCAAAGAGAATAGTAAAATACCTTATTTTACCTGCATTCCAGTATTTCATTATGACCATACTATAAATTAGCACACCAACCAGTGTAATAATGTGTACTGAGGACCTAATCAAGCTTATTTTGAAATTGCAGTTTATAGATCCACCACACTGTGCAGATCTAAAGCAAAGACTATTAAAAGAGCCTTAAAACATTA
>XM_036972935.1
GCACCACCCTGTATACTTTATTGGACTATCAGAGGTGAAGACTTCACATATCCCAAACCAGGACAATTTCTCAACATTAACATATTTCAAGATTCTTTGAAGACCTAGTTGGACGTTAGTCTGTGACAGAGCCCTCAAAATTACCAGTATGGCAGAATTGCTCATGCAGAACAAGGACAAGATTGAGAAGGCGGTGGAGATCATGGGACAGGCCTCTGCGATCCTGGCAGCCACTGTGggccagctccatcccatcctggAGGCTGTATTCTTAGTATCCAATGTGATCTTCAGCAACCCAGAAGGAGAGGACGCCCGCTATCTGACTAAACAGTTCAGCATGGTCAACCAGAAACTGGAAGGCATCCAGGCTGAGAACAACCAAATCGCTGTGGAGCTAGAGAATATCACCATGAATAAGCAGAACTTTGACCGTGAGGCTAAAATTCTCAGCCAGCATGAGAAGTACCAGGACATTGTCAACGCCAAACCAGAGTCAAAAGAGAAGAAGATGGAGAAGTTCCTCAGCCATTATGAGAACACGGACGCAGACTTGAACCTGGACGCCCTCTACAATGATCTTACTGGGGACAATATCTCAGGTAAGCCCATGCTGGTTTCCACAGAACAATGGAGTAGAAAGGCAGTAGAAACGTTCTGTGCCAGGCTTAAGAAGCTCTTTGTGGCGGGCATCATTGCTGTCATTGGTTACGCCAGCCTCAAGAAAGGGTTTATGGTGGATGAGATAGTGAAGAAATGGCTGGAGCGTTGGGAAGATGTTGAGAACCGCGTGAAAGCAGTGTTGGATGATTACACTGTAAATTTACACAAAAGAGCCAAAAAGGATATGGACGACCAGCTTAAGGAGAAACCTGGCAGTGTTGAACTTGACTTCACTAAATCGATATTGAAAACCCTTAAAGAGAAATATTACTGGGTGAGCTGGTCTGTCAGGGTCTTCAATGACAAGGAGCGCCTTTTCTGTTTCAACTGGCTAGTTGGAAAGAAGTACCATGGCAGTGAGGGAGGAGCTAATTACTTTGAAGTGATGACCAAGAACAACATCAAAGTGATGATCTCTTTTAGTGTTCAGCCTAAGCCTATCAACGAGGTTCAGATCCAGCAAGAGATTGAGGGGCAGAAGCTGAAAAGGAACATGATGGATGTGGCTCAGGTCCTCAGCAGAAGTCTCCCCAACTACCAGGTGCATGCTGTCAGCTACTATAAGGAAGTGGTGGAGTCCAACAACTTCCAAAAGGATTGTTTCTACTATGGAAAACACCAAAACGTGCACCTATACATTCATGCTGTTTAGGCTTTTGTTTCACAGGGCAGTTATAATGAGAGTAGTTATAATGATTAAAACTACAAATAAAATCATTAAGTTTAGGTGTTTGTATTGATATCTAAAACATAGCTGATGGTTTAGCTGGTGATTGTGGGAAATGTACTCTCTTGTTTATTTGTTTTGTAGGTTTGTGTAGTTTGTGATAGTTTAAACTATCAGGATTTGTATCTGTATAAGAATGGATATGAGTCATTTTATGTCAGGCTGTGGGTATCTACTGAACAGTGACAAAGTATGAGAATGTGATACTTCCTTCTACCAAAGAGAATAGTAAAATACCTTATTTTACCTGCATTCCAGTATTTCATTATGACCATACTATAAATTAGCACACCAACCAGTGTAATAATGTGTACTGAGGACCTAATCAAGCTTATTTTGAAATTGCAGTTTATAGATCCACCACACTGTGCAGATCTAAAGCAAAGACTATTAAAAGAGCCTTAAAACATTA

Function

NR:

description
uncharacterized protein LOC110515020

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594088.2 False 1869 mRNA 0.43 3 24400704 24409697
XM_036972935.1 True 1802 mRNA 0.42 3 24400704 24498985

Neighbor

gene id symbol gene type direction distance location
LOC110515008 LOC106605295 coding downstream 9589 24389041 ~ 24391115 (-)
LOC110514995 LOC106580635 coding downstream 22339 24361483 ~ 24378365 (-)
LOC110514973 LOC106580622 coding downstream 22623 24373801 ~ 24378081 (-)
LOC110514914 LOC106605242 coding downstream 57831 24336724 ~ 24342873 (-)
mapip LOC106580651 coding downstream 64561 24331526 ~ 24336143 (-)
LOC110515051 LOC106581796 coding upstream 66728 24565713 ~ 24576410 (-)
LOC110515085 LOC100380645 coding upstream 103636 24602621 ~ 24619117 (-)
LOC110505156 NA coding upstream 147374 24646359 ~ 24647543 (-)
LOC110515097 LOC106605292 coding upstream 158825 24657810 ~ 24712733 (-)
LOC110515141 LOC106581821 coding upstream 228618 24727603 ~ 24765483 (-)
G237732 NA non-coding downstream 51345 24349106 ~ 24349359 (-)
G237723 NA non-coding downstream 91693 24305682 ~ 24309011 (-)
G237714 LOC106605309 non-coding downstream 100051 24300193 ~ 24300653 (-)
G237705 NA non-coding downstream 114914 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 116275 24284199 ~ 24284429 (-)
G237828 NA non-coding upstream 15126 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 16210 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 27799 24526784 ~ 24526988 (-)
G237838 NA non-coding upstream 28315 24527300 ~ 24527563 (-)
G237840 NA non-coding upstream 29489 24528474 ~ 24528781 (-)
G237657 LOC106605316 other downstream 216740 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 620569 23771511 ~ 23780158 (-)
G237047 NA other downstream 1211673 23157109 ~ 23189031 (-)
G235881 NA other downstream 1825715 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2645203 21744425 ~ 21755710 (-)
G237832 NA other upstream 22234 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 270577 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 437531 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 700103 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1324371 25822812 ~ 25825108 (-)

Expression


Co-expression Network