LOC110515085 (LOC100380645)


Basic Information

Item Value
gene id LOC110515085
gene name LOC100380645
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24602621 ~ 24619117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594134.2
CAAATTCTAACTATGATTCTCAGAGATGGGACAGACAGCCGACGGGTGAAGTACATGTTTGGCAAAGATATCTGCTTGTGAACATACTGCATCTACCACAGAGCACTCCATCCATGGTTTATCGACATTTCTATTCAGACCTCATCGTGGCGCACAACATTAGAGGAACGAAAGTAACGTTTATTTTGGGATGATCCGTATGATTTCACTAGATAACTTCGATCACATAATTGCGTAGAACTGTGGTCAGTATTGTGTTTTTGTGATTGAGAGAATATTTTGATTTAGTTCAGTTCGAATATTAAGCAGAATAAGATTCTAGGCAGTCGATATTCATGAAAATGACACTTTAACGACCACTTCTCCATTCTGTACATGCTGTATTGTTAGTCGACTTTTCAAATACAATCAACGTTTTTGAGAGAGCGTGTTTATGGATTTCTGCGCAGAGCAGAACACTGGCAGTAGCCTCCATTCTTACGCAATAGTCATGTTGATACCGTGCTGTCTTCGTAAACTTTGATAGAAGTTTACAGAAGATACGTTTACGACAGGGACATTTGATTAACTAGAGAAAATCAATTTGATAATATATTAAATACTTTTTGGAGGAAGTGGGAAGCGCCTTTTCGCCCTGCCTTGTTTTCCCAAGACGTCAGAACGGATTCTTATCTCCTCCCCGCGCTACGGAGTTGGACTCGTATCTGTTGTCTAACCAAATTGTTTTAGGATAGCATGGCAATGGTAGTAAACCAGTGGCAAGAGAACATTTCGGCGGATCCCGGGTCCCAGCTCCAGATTTGTAGTCAGGAGCCTGGCGGGACACCGGGAACCCCCTCTGGTTCCACCCCGGGGAACGATGCACTTTCCGGGGACAAGATTCCCAACGTGGACTGCATGGTGTGCGGGGATAAGTCCAGTGGCAAGCATTACGGTCAATTCACCTGCGAGGGCTGTAAAAGCTTCTTCAAGCGTTCGGTGCGACGGAACCTCAGTTACACATGCCGGGGGAACCGCGACTGTCCCATCGACCAACATCATCGGAACCAGTGCCAGTACTGCCGATTGAAGAAGTGCCTCAAAGTCGGCATGAGAAGAGAAGctgtCCAGAGAGGCCGCATGTCCAACTCCCAGTCTAGCCCGGGTCAGTACCTGACCAATGGAAGCGACCCTTACAACGGGCAGCCCTACCTATCAGGATTCATCTCTTTGCTGCTGCGCGCCGAGCCTTATCCCACGTCCCGCTACGGGTCCCAGTGCATGCAGGGAAACAACCTGATGGGCATCGAGAACATCTGCGAGCTGGCCGCACggctcctcttcagcgctgtggAGTGGGCCAAGAACATCCCCTTCTTCCCTGACCTGCAGCTCATGGACCAGGTGGCGCTCCTGCGCATGTCATGGAGTGAGCTGTTTGTGCTGAATGCGGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCCCTGCTGGCGGCGGCTGGCCTGCACGCATCGCCCATGTCTGCGGAGCGCGTGGTGGCGTTCATGGACCACATCCGGGTGTTCCAGGAGCAGGTGGAGAAACTGAAGGTTCTGCAGGTGGACACAGCTGAGTACTCCTGCCTCAAATCCATCGTGCTCTTCACCTCCGATGCCATGGGCCTGTCGGATGTGGCCCACGTGGAGAGCATCCAGGAGAAGTCCCAGTGTGCCCTGGAGGAGTATGTGAGGAACCAGTATCCCAGCCAGCCCAACCGCTTTGGCCGCCTGCTCCTGCGGCTGCCCTCCCTCCGCATCGTCTCCTCGCCCGTCATCGAGCAGCTCTTCTTCGTGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGCTGCGCGACATGCTCCTCTCTGGCTCCAGCTACAACTGGCCCTACATGCCCGTGCAGCGCGACCGCCCCATCTCCCTCCACTACAATGAAAACGGGCCCTGAGGAGGACGAGTCGTCGGGTATTCAGCTCTTCATCCATCTTTCATCGAccatccctcaatccctccctccgtttatctcctccctccatcccctggaAGACCACCACCGTTCTGCCAAAAAGCAGACTGACCACCTCACCACATCCCTACCCCATTCACCAATCCAGCCATTCACATGCCTCTTCTCCAGGGGACCACGGCCAATAGAGAGACAAGGAGGCTGCCATGGCCCCTCCTACTTCGCCATTGCCACATTTGAGAGGTGACACTAGACGGGCCGGCTGGCAGAAGGGTTTTTGCGCCGttctcctgcagctctgtcggacTTACGCCGTTAAAGACGACTTTGTCAGTCTTGGACTCGACGCGGTGTTGGCTACTGGCGACGCAGTCACTCTATTGTCGGCACTGTGCTTGCATCTAAAGGAGACGTGTCCAAGAATCTCCACTGTATGGCGATTTAGAGCAAGGCCTTGGCCGATATAACTGCTTGACCGAGAGAGCCAGGCCAAAGGTTCTTCATCAACCAATAATTTTTTAATTAACCCGAAGCCATTAAAAAACAAATGCCAAATTTCCTTGGAATTTTCAGAAGacatttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattagcacTGTTTATAATGAGAGaaattcatgattgtgtccataTGTATGTCATTGACTCATAGACATCCACATTAAGGGGTATGTTGGGACTAGATCAGGTTCAGGttggggagacaggacagacaggacagacatgcCACTATCAGTAGGTAACAGAGAATCACTCCTCACCCAGGGCAAAACACCTATCAACAGTCTGTACCAAAGTGGAACATGGATATTAATTGTTTGGATTATCTTTGTGGTAGTGGTGACAAAAACACCTTTTGGTTTGTCTATAATTTGACCTTTTACTTGTATTTAGACGTCAGAGGGTGTGGGAAGTtgcaaaacaaatatatatttacaaaaatagGCACTTGCAATGTGAAACTATCCAGAACCCACACTTGACCCACTCCCATCATAAACACAGCACTGGTAGATTCTTCCTCAGCTGCCATTTTGAGGTCAAAACTACAGGGCCACTAACTGGTAATGGTCAGTGTACTTCCGCCACTGTTTCAAAGCAGAATATCATACAAGTATCCCTTCATAACATCTATATAATTCTGTCAAAGGAATGACATAACACATGCCAGTTAATCCCTGTTAGTTTCATGTCACaatcacaaaaaaaatgtaaattgttATGGAGCCTGGACCAATAAGCATTTGAAAACTATAGTTGTACTTTGCCTTAGAACAAGATTTTGTCACTGAGCATTTATTTTATGACTGTGCCATAATCTGAAGTTACCTGTTATGACAGGCAATATGTCCTCCATATGAGGCCACCTCAATTCAATTGTCATTCAAGCAGCATACTAGGAAATTGTATTACTAACCTCCAAATCTCAATTAAAGTTACAATGGTCATTACTGTGATTTAGCATAGATATTATTGTGTTTTTGTTACCATCAATTGATGACGGGCTGTAAGGCAACATTGATTGTTGGACGACCAGTCTGTTTTTTAACGTGGCACTGGGGTATCAGCAACAATTATTGGGATTTCAAAGCCATTGGGACCTTGGAGAGCAGGACTGTCTGTTGATAAATTTGTTCACAGAATATTTCTATAagagtatgtttttttttctctatttttgttTGGGAAAAATGGATCCATTAattgaaataaaaatgtgttgttcACA

Function

NR:

description
PREDICTED: nuclear receptor subfamily 2 group F member 5

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0032526 response to retinoic acid biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594134.2 True 3721 mRNA 0.48 4 24602621 24619117

Neighbor

gene id symbol gene type direction distance location
LOC110515051 LOC106581796 coding downstream 26211 24565713 ~ 24576410 (-)
LOC110515020 LOC106581398 coding downstream 103636 24400704 ~ 24498985 (-)
LOC118944659 LOC106581364 coding downstream 118201 24483236 ~ 24484420 (-)
LOC110515008 LOC106605295 coding downstream 211506 24389041 ~ 24391115 (-)
LOC110514995 LOC106580635 coding downstream 224256 24361483 ~ 24378365 (-)
LOC110505156 NA coding upstream 27242 24646359 ~ 24647543 (-)
LOC110515097 LOC106605292 coding upstream 38693 24657810 ~ 24712733 (-)
LOC110515141 LOC106581821 coding upstream 108486 24727603 ~ 24765483 (-)
LOC110515154 LOC106605289 coding upstream 147932 24767049 ~ 24799511 (-)
LOC100305168 rbm8a coding upstream 189308 24808425 ~ 24815467 (-)
G237877 NA non-coding downstream 42045 24560332 ~ 24560576 (-)
G237863 NA non-coding downstream 49641 24552693 ~ 24552980 (-)
G237862 NA non-coding downstream 50247 24552115 ~ 24552374 (-)
G237851 NA non-coding downstream 67760 24534558 ~ 24534861 (-)
G237850 NA non-coding downstream 70573 24531715 ~ 24532048 (-)
G238315 LOC106581815 non-coding upstream 98621 24717738 ~ 24718558 (-)
G238316 NA non-coding upstream 100619 24719736 ~ 24719969 (-)
G238414 NA non-coding upstream 309682 24928799 ~ 24931448 (-)
G237832 NA other downstream 81077 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 418657 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 822486 23771511 ~ 23780158 (-)
G237047 NA other downstream 1413590 23157109 ~ 23189031 (-)
G235881 NA other downstream 2027632 22573833 ~ 22574989 (-)
LOC110515208 LOC106581894 other upstream 317399 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 579971 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1204239 25822812 ~ 25825108 (-)
G240409 NA other upstream 1949984 26569101 ~ 26569522 (-)

Expression


Co-expression Network