LOC110515097 (LOC106605292)


Basic Information

Item Value
gene id LOC110515097
gene name LOC106605292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24657810 ~ 24712733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594142.2
ATCAAACAGTATCATTTCTCATGTCCAATTATAGCCACGAGCTGCAGCACTTGTAGGCAGAAGCATCTCGTGCACAGCTCAATGCACCAACAATTTGGTGAGTATGGCGAGAAAGACAGTTTGGGCAGAAATCTATAGCGTCTATAATATTGCCAAATATGTCTTCAAATGCTCCCGTGGTTTGAAGAATTAATGAATGCCACATCACAAACAGCGTACGGTTCCATTGACATTCTAACGTCCACACTGAAGCAAAAGAAGAACACCGTCTCCGAAGAGAATTGTGTACGCGAGACTAGAGGGATGGATGCTCGAGAGGAGGGGGATGCTCGAGAGGAGGGGGGTGCTCCAAGAAGGATGCTGTGTGGTAGGGTAGCGTACGACGTCATCCTTGTGCACACAACAGGGTTATGTTGTATTCTAAACTGGGTAGGTGACCACAGAACAATTTTCATAGACCGGATTTAACacctttagattttttttattaacaCGGTGACAACCTTATTAACAAATAAATACAGTTGAGGTCGACTGGAAAAACGCCAACCTTCTCTACCAAAGGTCTCAATTTGGAGGAAGATATTCTATCTGTAGCTGATAAAGgagctgtccgtggtgctgaattcCAGATCCACAGAGATCCCCAGTGCACACCCATGCCCTTGTGCCACTCCTGATATCTCGCGTTCCTAGCAGCAACCAACCTCACCGCCAGAGCCAAGATGGACGACGGCTACGGACAAGACGGACGTCAGGACTTCATCCGCGGTGCCAAAGACATCGCCAAGGTGGTGAAGAAGCAGGCGGGCAAGAAGGTGGGCCGCAGTGTGGACAAAATGGCCGACGAGTACACCAAGCGCTCATACAAGCGCTTCGAGGAAGAGGACGAGGATGACGACTACCCCGTGCATCAGAGCCAAGATGGCGACGGCTACTACCGCAATGACAGCCGGGCCAACGACGACGAGGGCGGCCACAGCGACTCCACGGAAGGTCACGACGAAGACGATGAGATCTACGAGGGAGAGTACCAGGGGATCCCCCGGGCGGAGTCCGGCAAAACGGTTCCGGTGGACGGGATGGCCCCCCAAGCTCAGATCAGGGACCTGGCCCAGTtcgaggcagagaggaggaaggatcAGGAGGAGCTGGCCCAGCAGTACGAGACCATCCTGCAGGAGTGTGGCCATGGGAAGTTCCAGTGGACGCTGTACTTTGTTCTGGGGCTGGCCCTCATGGCAGACGGTGTGGAGATCTTCGTGGTGGGCTTTGTGCTGCCCAGCGCAGAGAAGGACATGTGTCTGTCAGAGGAAAGCAAGGGCATGTTGGgTCTTATTGTGTACCTGGGGATGATGGTGGGGGCCTTCCTGTGGGGCGGCCTGGCCGACCGGATTGGACGGCGACAgaccctcctcatctccctctccatcaacAGTGTGTTtgccttcttctcctccttcgtTCAAGGATACAGCTCCTTCCTTTTATGCCGTCTGCTCTCCGGTGTGGGcatcgGTGGCTCCATCCCCATCGTGTTCTCCTACTATTCTGAGTTCCTGGcccaggagaagagaggagagcaccTCAGCTGGCTCTGCATGTTCTGGATGATCGGTGGCATCTACGCCTCTGCCATGGCCTGGGCCATCATCCCCCACTATGGCTGGAGTTTCCAGATGGGCTCTGCGTACCAATTCCACAGCTGGCGTGtctttgtgttagtgtgtgcctTCCCCTCTGTGGCAGCCATCTCTGCCCTCACCACAATGCCCGAGAGCCCACGCTTCTTCCTGGAGAATGGGAAACACGATGAGGCTTGGATGATTCTGAAGCAGGTCCATGACACCAACATGAGGGCGAAGGGCTACCCAGAGAGGGTCTTCTctGTGACCACCATCAAGACAGTTAAGCAGATGGATGAGCTGGTGGACATGGGAGAGGGCACCGCCTGGCACCAGAGATGGAGGATGAGGCTGGCtgacctgttcaaccagGTGTGGAGCAACTTCCTGGCCATATTCTCTCCTGAGTACCGCCGCACCACTCTCatgatgatggctgtgtggttctCTATGTCGTTCAGtTACTATGGGCTGACGGTGTGGTTCCCTGACATGATCAAGTATCTCCAGAAGCAGGAGTACTCCTCGCGCACCAAGGTCTTCATCAAGGAGAAGGTGGAGCACGTCACCTTTAACTTCACCCTGGAAAACCAGGTGCACCGCAACGGAGAGTACTTCAACAACAAGTTTATGAATCTGAAGATGAAGTCCATGGTGTTCGAGGATTCTCTGTTTGAGGAGTGCTACTTTGAAGACATCACCTCCAGCAACACCTTCTTCAAGAACTGCACCTTCATCGCCACCCTCTTCTATAACACAGATCTGTTCAAGTACAGGCTGATCAACAGCAAACTGGTCAACAGCACCTTCCTGCACAACAAGGAGGGCTGCATGCTTAGCGACTTCAGCGACGAGAACAGTGCCTACATGATATACTTTGTCAGCTTCCTGGGCACCCTGGCCGTGTTGCCCGGCAACATTGTGTCGGCGCTGCTCATGGACAAGATCGGACGGCTGAGGATGCTGGCGGGCTCCAGTGTGATCTCTTGTGTCAGCTGTTTCTTCCTGTCGTTTGGCAACAGCGAGTCGGCCATGATCGCTCTGCTCTGTCTGTTCGGGGGCATCAGCATCGCCTCCTGGAATGCCCTGGACGTGCTGACGGTGGAGCTTTACCCCTCTGACAAGAGatGCACAGCGTTTGGCTTTCTAAACGCCCTCTGTAAGCTGGCAGCCGTGTTGGGCATCAGCATCTTCACCTCTTTCGTGGGCATTACCAAGGCTGTGCCCATCCTGTTCGCCTCCGGGGCGCTTGCAGCGGGCAGCTTCCTGGCGTTCAAGCTGCCGGAGACGCGGGGCCAGGTGCTGCAATAGTGTGGCCACACCCCTAGGGGGCGACATGGGGGGTCAGAATGAGTAAGCCACACTGTGAACAACAAGTAGTCCAAGAAACCCCTAAACTCCGCCCTGTACGCCCCATTGAAGTCAGAGCCTATTCACAGGAATTAGTTCAATGCAGATGCTGCACATATCTACCAAGCTGTAAATATTGTGGATTGCCTGATATTGGATGTACTGTTTAGATAGACACATCTCTATACTACTAAGATCTGTGGAACTGTGCTGCCGATGCTTAACATTGATCCCTATGAATAGGCTGTGAGTTGGTAGAGAAAGGGAAGTGCAACCAAACTCTGCCCCTAGACCAACAGAAGCTGTTCCAACTTGAATCCTTGTTCAGTGCAATCTCAATCACTGAGTGTATGTGTTTATGAGGGTTGAGGAGGTAGTTTAGATGCAGGTCCCCAAAATGAAGACAGATTACTGGGGTTATGGGGTAGGGACATGGGGTCTAGTTTATGAGCCATGCCAATAGCCCGCAATAGAAATGACCACTAGCCATCCAATCCATATTCACACCAATTTCTCTGATAAGCTCAGCTCACTTCCCATCTACATGAGTCTACATTGCTATGGTAGAACGTCAGTCATAAATGATACGTTATGCCTTGATTTGAACCATTTTTGACTTAATGGGTAAACCAAAACATTCAGTTAAACCAAGGCCTCTCCTCATGTTCATACCTTCCAAGGTCTTGTGTTTATGTTATGTACAAAATAACTGCCATTTTATAGGTTTTAGAACATTCTAGGTTTACTTTTCATTATGGTTTGAATGAGACTGTTGACAAAAGTGATCTGTTGAGCTTTTCCCTTTAAAACATTCTTTCTAGCCGTTCTTATCTCAGTCAATCATAAACGGCTGCTCAAATCAATCCTTCAAATCTCCATTTCTGACAATGTTGAAATTTGTTCAGCCCACATTGTTCGCCATGTACATTTTAGAACAGCACTTTTGTTCAAACATTCCACATTTAAAGCACAAACGTTTGCTAATGCAAATAGGACTGTTGTCACAATTTGTCACAatagttattattattgtcaCGTTTTAAACAAACGTTTAAAAGCCCACAGTTCAAGCGTCATTCTCGCGTCATGTATCCTGTAGTAACAAATGCCTTCTTTGTTCCATCTGTCAGAGGTTTTTATGTTTTGCTCgtagaaaatgtgtttttggaaaGTGGTATGCATAAGTGAATTCGTGGACAATTAGCCAAAAAGATAGAACACAATACGAAAATGGCATTGAAGTGTATCATGTTGCTGTAGATCAATAAGTCAGATGTTAGATGTTGAATCCATGTCCTTTTTACGAGAGAAATCACACTGCCTTTGATATCATTTGCCTGTTCTAACATTGACCTTGGAATTCAGGAACATTCTCGCAACCCTTAAACACATCAAACCACTTTAATGTGCACAACTGAAACATACCTTTTCATTTTTTGTGATATTGTGAAACAGGAACTAGATGTTGAAAATAAGACACAAAGATATGGAAAGGACGTAGTAAACCTCCGTGAAACATTGCAACAATGTGACATATTTTCAGTAGATTCCATTTGATATTTATTTTTGAGTTTGAAAGATATTAAGATATATTtaagatgtatttatttatgatATATTTACTTTTGGGTGCAATGTGTTTCAAAAGAGACTATAGTGGTAAGGACATATATGCACTGTCATTAAATACTATCATGTACATCATAGCCCATATTTTATTCTTTATTTTGATATGGGTGTGAGACTGTGCTTGTTTGCCTGTGCAATATTGAACTTTGACCTGCAATACTGAGGTGTTTTTTGTGGATTCTTGATAGCTTGTTTATTAGTTGTTTTATCCGATACTTGGAGTATGATTAACTGATGTGGCGATACAAGTAAACGCTGCTTTATTGATTGGATGATCAAAACGACAATTAAACCTCGATGAGATGGGGAACATTATTGGATGCTTATGGGAAACATTTCACCGAGCATTGAAATAGAAGTAGTATAACTTTCCTTTGATTTCCACCCTTGAAGCTTAGAACATCATGATATATGGGTACAtttaacatgttacacacctccgCTGAGTTTTTTTTATCATACATGATAGACTAGGACTAAACACACTGCTAAGGGCAGTGTCCTCATGGGATATCTGATCCATAGATTTCCTGAACATTGGTTTGGTACCAAACAACGTTCCACATTCCCCTTATAGCAAGCACATTGATCAAGTGTGGTATGTTCACAATTGCATGTTACAAAGAAACAAACTCAGAAAAGCAACAAAGCACTGATTCAGCAACAAAGGAAATGATCATAAACTGCCATTTTTTAGGATAGCAGCCATATGTAGACTTAACAGCATTCTAGATAAAGACCAATCCATTGCACTAAATGTACTTAGCTGTACATGCACAGTTGTTAATGCCTTGCATTCTTGAAAAGACCAAAACCTTTGAGACATAAAATATATCAGTAGCTAGCACATGAAGGGAAACAGAAGGTAGAGCAGTTGACGTACGCACAATAACTGCTTACAAGCGACCAATTTAAGACAGTAGCCAAATGATTCATTGGTACCAAATGAGTCACGCATGCAGTTGTGAACAGCACACAAAATAATCAGTATACATTGATTTACAGTAGTTGCAGTTGACTATTTATTGACATAGCAACCTCTCACTTTACTTTATGTTCACATTACCATAAACTAGCATATCGTACGTTCAATGTATGACCCCTTAATCTATATAGGAACTTCAAGCCGTTACCACATTCCTCAAAATCGACATGCATTAGTCTACACATCCAAACCATTCACTGATGGTTTAGTGACTGCCGATCTATAAGTGTGCCATGAGTAACTTCTCTCATTGATTATTGCCAAATATTTTTGTATGTCTTAAGTTTATACTATGTCATAAAGAAACTGGAATATAGATTTAAATatgtaaattaaaataaataaaatataacatAGATCATTAATAAATATTATAGCTCTTTATAACCTTTGACCCCATGAAAATATTCCTGTGGTAGGGGGAGCAGTTTTTATGAACTGATTTGGGACTTGGATGGCCAGTCTGTCGGAAAGTACATTTATTCACAATTCCTCGAAGAAGCGCAGTAATCTTAAAATATTCCATTTGTTATTGAAGAATCAGCATCAGCATTACAGCATGTCTGATCTGTGTTTCCATATCCTATCTCTATGTTGTCATAATTATACCGCCCATGAAATGATAAACAAGGATGTCAATATTAATGTTGTATAGTACGACATGGAACGCTGTGAAATGCTTAACTATCTATTTACTCTCTCAGTGAACCAGTTCAGGATATTTTAAGTCAAGATTGTTTCTAGTACCTGTAGTTGCATATTTTCAATTCTGTTACAAGGTTTTTTTGTATTCTTAACTTGTTGCTCGGTCAACGGTCAATCATGAGTGCAAAAACGTAATTATAGCAATAAGTGTTAGATTGTTTGTCTTTTATCTCTACCCAAAACACTACTGGGAAATGAAACACATAATATGCTGGGCCTTTTCCACTGAAATGCTGTGTGTTGGCTTCTACTAAATGGGACTGAATGGCTTATATTCACTTCTAAAACTACCCCTAGGTCTTTGGAGGCTTTTGTCAATAAGAAAACATTGCAATTAATTACATGTAACAGAGAATTTATCACTGTCATAGTACTGTGCTGTAGAATCTGTAGTTGTTTGTATGTAAGTATATATCATAATATTAGAAATTACAATACGGTATACATGTGGAACCATGAAAAAATACAAAGGACAAAAAAACTGAAGTGTAAATGACAGAGTACTATTGTATGGTGTCTTCGATTTTGTGTATTTTGTAAATGAAAATGGAATATAAgtaaatacatcaaaataaatacTACTGGTTATGAAGAATACTTCAATGTTACAACGTCATGATTCTGTTATAAAGTTTGTGTGTGAGATTTGTTCTTATCATTTGTCAtcgtttatttatttaccttttcAGAACTGCAATGGATAGCAAAGAAAAATAAACTACTGTCCTAATGATGAAA

Function

NR:

description
synaptic vesicle glycoprotein 2A-like isoform X1

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594142.2 True 7032 mRNA 0.43 13 24657810 24712733

Neighbor

gene id symbol gene type direction distance location
LOC110505156 NA coding downstream 10267 24646359 ~ 24647543 (-)
LOC110515085 LOC100380645 coding downstream 38693 24602621 ~ 24619117 (-)
LOC110515051 LOC106581796 coding downstream 81400 24565713 ~ 24576410 (-)
LOC110515020 LOC106581398 coding downstream 158825 24400704 ~ 24498985 (-)
LOC118944659 LOC106581364 coding downstream 173390 24483236 ~ 24484420 (-)
LOC110515141 LOC106581821 coding upstream 14870 24727603 ~ 24765483 (-)
LOC110515154 LOC106605289 coding upstream 54316 24767049 ~ 24799511 (-)
LOC100305168 rbm8a coding upstream 95692 24808425 ~ 24815467 (-)
LOC110515174 NA coding upstream 107110 24819843 ~ 24825136 (-)
LOC118944507 NA coding upstream 130717 24843450 ~ 24844713 (-)
G237877 NA non-coding downstream 97234 24560332 ~ 24560576 (-)
G237863 NA non-coding downstream 104830 24552693 ~ 24552980 (-)
G237862 NA non-coding downstream 105436 24552115 ~ 24552374 (-)
G237851 NA non-coding downstream 122949 24534558 ~ 24534861 (-)
G237850 NA non-coding downstream 125762 24531715 ~ 24532048 (-)
G238315 LOC106581815 non-coding upstream 5005 24717738 ~ 24718558 (-)
G238316 NA non-coding upstream 7003 24719736 ~ 24719969 (-)
G238414 NA non-coding upstream 216066 24928799 ~ 24931448 (-)
G237832 NA other downstream 136266 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 473846 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 877675 23771511 ~ 23780158 (-)
G237047 NA other downstream 1468779 23157109 ~ 23189031 (-)
G235881 NA other downstream 2082821 22573833 ~ 22574989 (-)
LOC110515208 LOC106581894 other upstream 223783 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 486355 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1110623 25822812 ~ 25825108 (-)
G240409 NA other upstream 1856368 26569101 ~ 26569522 (-)

Expression


Co-expression Network