LOC110515127 (LOC106581815)


Basic Information

Item Value
gene id LOC110515127
gene name LOC106581815
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24711483 ~ 24718629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594156.2
ggtaaaaaaaaacattcactgATGCTCAACAGTGTGTGCAGCCTATACCTTATGGTTCAGAGTGAATATATccaatcatcaaatcaaattcaagcAGTCCAGACTGGTGAAGCGGCGAGGCGATAAGGTGGTCCAGACTCCAGTGGAGGGAGGAGCAACAGCTATCCATGCATCACCCTCAGAGGAACCTGCTAGAAAACTGACAGACCTGATCAACACTCCCACACAGCTGCACAAATTGCCCCCAAACCAGTCAGCAGATGGGCTGGCTGGTGTGAGACCCACATAACTGACAGAAAAGATTACAATCTTAACAAACAAATGTTCCTGAAAGTAAACACTGCCCAGACTAGCTAGCATCTCAATGTGGCCTACCGTAGAATGGTCTTCATTGCTATTTGCAGCTATTTGACTATTATTTGCCTGTTATTACATTTAATTTAGAAGAATATGTGTGTCATATATTTGTACTATAACAAAAGTGAGCCTAGCCAGTGCTAGTTTACCAAGAACACCTAATTTAATTACAAAGATATCCAATTTCCTGTGCACAATAGTGGCATCATCATTTCCTTCCCTGCCTTATAATTTCATACTTTATGATAACAATATAAGACAAATAATATAACACTTGCATTGGAACAACTCTTTTTTTCAAACGTAAAGTTAAAACGATTGACTGACTATATAATTAAAAACATTGATTGTAGCCCATAGCTGACATTAAAACTCAGTGGGTCAGTAAATTTAGTCAAAGAATGCTCAGGTATGTATCGCCACCATGTGGCTACCTTGTAAAGTTATGCCTTCATGTAGCGATCGCCGCATCTTAATGACCCGATTTTCCACAAGAACACATGAACATGGCCCTTAAAGAGAAAAACCCTATGCGCGTTTGGCGTCAGACCATTTAATTAATGTATTGCTATATTCCGAAACGCCAAGTGTAGCCTATAGACTTTCCATGTATTATAATAAATAACGTAAAGATCAATATCAACTGTCCCGTTTTCATCGCATTGGTCAAATCTAGTCTACGTCGTGTGCGCTTTTAGTCTATCCTGATTACTCCAGCTGCTCCACTTCGTATTCCGTTTCTGTTCGCGTGCGGTGTATACTTGGTGTCAATGTAACCTACTGTAGGTACAGGAAAAATCGCCATTGTAACGTTATTCATTTTTTCTCGACTGGAACTAGTACAACGATACTGCTTTGTTATGGTTTTTGGATTTGCCTAAATTTCATATTTAGATAGGGTGGTTTTAAGGACTACAGAGATTGTAACATATGAAATAAGACCGACGCAAAGAGGATGTGGCCCAGAAACCAGGTCGATGAAATATTGGCGCTATCATGAGAGGAAATGGTATGGACCTTTTATGGAGAATCTTAGCGGCTCTGAGCTTCGATTGTTTTAAGGATTCGGCGTCTTCACAGAGGTCTCCAGGCAAGCTGAGCTCCAGCCAGGCAGGTAGTCTGGAAAGCAGCTCCCTGACTGGCTCTCTCTCCTTGGGGCCAGACCTGCCTCACTGCCAGTGCTGCATCTCCTACGAAGCCCGTCTGAAACGCCTGTCCTGTGGCCACCTCTACTGTGACCCCTGCACAGACCAGATCGTCAACCTGGCCTTCGAGGACATCGAGGGCCTCTCTGATTACCCCTGCCCCATGTGCAAATCCCTCCGCCAGCTAGGGGACCTGGGCCCCCCCTCTTATGGGTACCTGGGTACCCCCTCCTTTGGGCCATGTGGGACCCTGCAGCAGCAGGTGGCTAAAGAGCATGGGAGCAGCTGGGGGTAAAACTGAGGCAGTTTATACTGTACATCAAGGGGTGTGGTTAAAAAACAAATGCATGTTGTCCCCTCTCCAGATGAAATACTGTAGGAACCATTTAGACTTTTCAGTTATGTCTTTAGTGTTTTGATTTGAATATTTTAATGCACTGCCTTACACTGAGATTGTGATCTGGTAATGTGTGATGGATAGTGGCTCAGTGTTTCTTCCTTGTGTAATATGGTGGTGGAAGTGAAACTAATGGAAGTGCATAACATTACAGATAATGTCCTTTGGTGTGCCATGACATACTGTAAATTGATATTACAGGGTGATTAAGCCAGAGCTAAGTATTAGATGTTTGTGTCAGACAGTTCTTTACATTTATGTGTAATGATTATTATTAGTAGACATTTGGACCTTACtttaaaaatattatattttgagTATACTTACTGCTTAtgcattttaatttaatttaattgtacAGTGCCATGCTACTTTTAAAGTGTTCAATATCatattgtaaatatatattttgctaAAAAAATAAAGTTTGTGAATTGTA
>TU271953
ATAGCTGACATTAAAACTCAGTGGGTCAGTAAATTTAGTCAAAGAATGCTCAGGTATGTATCGCCACCATGTGGCTACCTTGTAAAGTTATGCCTTCATGTAGCGATCGCCGCATCTTAATGACCCGATTTTCCACAAGAACACATGAACATGGCCCTTAAAGAGAAAAACCCTATGCGCGTTTGGCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594156.2 False 2338 mRNA 0.41 3 24711483 24718629
TU271953 True 190 lncRNA 0.36 1 24714558 24714747

Neighbor

gene id symbol gene type direction distance location
LOC118947812 m4a8a coding upstream 359130 24342562 ~ 24352353 (+)
LOC110514930 LOC106605309 coding upstream 398071 24299707 ~ 24313412 (+)
LOC110514864 LOC106580670 coding upstream 451936 24226912 ~ 24261294 (+)
LOC110505138 LOC106580604 coding upstream 503854 24204483 ~ 24207629 (+)
LOC110503950 LOC106605316 coding upstream 527227 24105516 ~ 24184256 (+)
LOC110515164 LOC106581855 coding downstream 98946 24817575 ~ 24819244 (+)
LOC110503966 LOC106581868 coding downstream 128898 24847527 ~ 24876184 (+)
LOC118948035 LOC106605281 coding downstream 255997 24974626 ~ 24976484 (+)
LOC110515267 LOC106605278 coding downstream 357710 25076339 ~ 25101218 (+)
LOC110515353 pbx2 coding downstream 394010 25112639 ~ 25119442 (+)
G237949 NA non-coding upstream 48459 24626222 ~ 24663024 (+)
G237959 NA non-coding upstream 56517 24648414 ~ 24654966 (+)
G237930 NA non-coding upstream 109604 24601674 ~ 24601879 (+)
G237920 NA non-coding upstream 116778 24594350 ~ 24594705 (+)
G237869 NA non-coding upstream 153945 24557241 ~ 24557538 (+)
G238000 NA non-coding downstream 815 24719444 ~ 24719699 (+)
G238007 NA non-coding downstream 8481 24727110 ~ 24727361 (+)
G238009 LOC106581821 non-coding downstream 11700 24730329 ~ 24730646 (+)
G238015 NA non-coding downstream 18190 24736819 ~ 24737202 (+)
G237983 NA non-coding downstream 45069 24763698 ~ 24764191 (+)
G236753 NA other upstream 655816 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 782396 23908750 ~ 23932207 (+)
LOC110514613 hormad1 other upstream 916288 23780400 ~ 23795199 (+)
G236372 LOC106581434 other upstream 1360668 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 1362105 23346880 ~ 23349378 (+)
G238034 NA other downstream 30776 24749405 ~ 24750383 (+)
G238047 NA other downstream 47037 24765666 ~ 24766363 (+)
G238050 NA other downstream 56650 24775279 ~ 24775945 (+)
G238540 LOC106582009 other downstream 476658 25195287 ~ 25199234 (+)
G239026 NA other downstream 822140 25540769 ~ 25541613 (+)

Expression


Co-expression Network