LOC110515154 (LOC106605289)


Basic Information

Item Value
gene id LOC110515154
gene name LOC106605289
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24767049 ~ 24799511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594163.2
GAATCGATTGCCTGCCTCTCTTTTCTCTGCAGCCAATCGGGGTATGAAGGTTTCCCCCTCTCCCGTTTCCATTTGACGTTAGCTACACTGGGATATTTCAGTCAAAAAGTATCGTGTGGTCATTGGTGTTTTAGATTGGCAGTCAACTTCTGTCTGTTTTGCGATTGGCAGGCGACATAATTTGGCTACCTCAGCTGGCTCGACTCAGAAGCGCCTTGGTTgacattgttgttgttgtaagtAAGAAACTACTTTGTCGTTGAGTCCTGTTTTGGATTTACAGTAGACTGCAACCTCTGGATTGGCTCAAAGTCAGGAAAAACTGGTCTAATAAAGGTGGAGGTTTTCACAGTATTTGTCAAGAGGGAGGACCATTATGGGACGATGAAAGAAATGTCTGCGAGGCCGCTCAAGGTTTGGCTGGACGTGTAAGGCAAGTTGAAGAGTCCCCCTTCCCCTTGGTCCAGTGTTGTAGGGGAGGGCAGATCCCCTGTTTTTTTTCCTACCCTGATGCCGCCCTGTAAATTCATGATCACATGACCTTGGATATGGACGCAGTCCTGTCCGACTTTGTCCGTTCCACTGGAGCTGAGCCAGGACTAGCCAGAGACCTGCTAGAGGGGAAGAACTGGGATCTCACCGCTGCCCTCAGTGACTTTGAACAGCTGCGACAAGTGCATGCTGGGAACCTGTCATACTCTTTTGCTGAGGAGAGGACGTACCCAGGCCCGGAGAAGGAGATGGCCAGAGTGGGGCGGCCCCTTCTTCACCGTCAAGAGGAGGTGCCGCAAGGTGAGAACAGTGCCACAGAGAAGCGTCTATCGAGAGGCATCTCCCATGCCAGCTCTACCATTGTGTCCCTGGCACGGTCACACGTCTCCAGTACGGGCAACTGTAGTAGTGAGCCCCTTCTGGACACGCCTCTGTGCACATTCCAGCTGCCTGACCTCACCGTGTACCGGGATGACTTTCGTGGCTTCATCGAGAGGGACCTCATCGAGCAATCTATGATGGTGGCCCTAGAGCACGCCGGCCGACTCAATTGGTGGACACGGGTGGGACCTAACTGTCAGAGTCTATTGCCATTGGCGACGAGTGGGGACGGAAACTGCCTGTTACATGCAGCGTCATTGGGTATGTGGGGCTTTCATGACCGCGACCTGATGCTGCGGAAGTCTCTGTATGCACTGATGGACCACGGCCAGGAGAGGGAGTCGCTGAGACGCAGGTGGAGGTGGCAGCAGACCCTGCAGAACAAAGAGtcTGGTCTGGTGTACACAGAGGAGGAGTGGCAGAAGGAGTGGAATGAGCTGCTTAAACTGGCCTCCAGTGAACCTAGGATACACTATAGCACCAATGGCAGCAATGGGACGGAGTCATCAGAGGAGCCTGTGTACGAGAGTCTGGAGGAGTTCCATGTGTTCGTCCTGGCCCATGTCTTGAGGAGGCCCATAGTAGTGGTGGCAGACACCATGCTCAGGGACTCTGGAGGAGAGGCTTTTGCCCCCATCCCATTTGGAGGGATCTATCTGCCCCTGGAGGTGCCAGCTGCCAAGTGCCACCGCTCGCCTTTAGTGCTGGCGTACGACCAGGCCCACTTCTCTGCCCTCGTCTCCATGGAGCAGAAGGACGGCTCGAAAGAGCAAGTTGTGATCCCTCTCACTGACTCAGAACACAAGATGCTGCCTGTACACTTTGCAGTGGACCCTGGGAAGGACTGGGAATGGGGCAAGGATGACACGGACAATGTCATGTTGGCAAGTGTGACCCTGTCCCTGGAGGCAAAGCTCCAGCTGCTACACAGCTACATGACTGTCACCTGGCTGCCCCTGCCCTGTGAGCAGGCACCTTTGGCTCAGCCCGAGTCCCCCACCGCCTCTGCAGGAGAGGACGCCCGCACCCCTCCCGACTCAGGAGAATCCGACAAGGAGTCAGTCAGCAGCAGCTCCAACGGTGATGCAATGATGACAGCAGGGGCTGCCAGCGTAGGTGGAGGTGTGTCGACTAAGaacagctcctcctcctccagctcgTCCAGTAACAGCTCGGCAACATTGACGACGGGTACGGGGGGAAAGGAAAAGCCCAAGAAGGAGAAAGACAAAGACAAGAAAAGGGCTGACTCTGTGGCCAACAAGCTGGGCAGCTTCGGCAAGAGCCTGGGCAGCAAGCTTAAAAAGAACGTGGGCGGGCTGATGACGGGGAAGAATGCAGGAGGCAGCGGGGCCAAGCAGGAGGGCACAGAGAAGAAGAAAAGTTCGCTGAGGGGGCGGAAGGGCAGCAAGGACAGCTCGCCTTCGGCCCACGCCTCTGAGGACTCTGGGAAGGGCTCGCCGTCGTCGGGCAGTGAGCGTCAGAATGGCACGGGCAGTGGCAGCAGCGAGAGTGACCCGTATAAGTACAGTGCCGACGTGAAGGCGAGCCTGAGCATCCTGCGGGCGGCCATGCAGGGCGAGAGGAAGTTCATCTTCGCTGGCCTGCTCATCACCAGCAACCGCCAGCCCTTCCAGGAGGAGATGATCCAGCGCTACCTGTCTGACGCTGAGGAGCGCTTCCGGGTAGAGCAGGAGCAGCAGCGGAGAGAGGCAGAGCGGAAAGGAAGCACCAACGGCATCCAGCAGCCCAAGAAGGAGGCAACGGCAGGCACAGAGGTGGGCTACCGCACCTATGAACCGAAAGAGGAGTCGACTGAGAGCTCACCGCCCAACTTCAGCCACCTCAAGTCGTCCTCATTCAACCCCTCACTCTACTCCGGCGTGGTGCCCATCCCCCGGCCAACCTTCATGGACCAGCCGCCCTCCCCGGCCCTGCTCACTCAGCACCCACACATGCACGGCTACATGGAGACGCGGCGCCAGCTTGCAGGTGGCTCCCCAGCCTCGTCTTATCCCGGGCTGCCTTCCTATGCCACCCTCCCCCGCCACTGCCCCATGGCGCAGGGCCCCCCTCACCCCCAGTACCACCCCCCGCAGGCACCGGTACCCCTCAGCCCCTTTCGCCTCATCCCCTCTTTCGCACCCTCATACCTCCCCGAGCACGACACTCCAGACTACCCCACCTCAGAGCCTGTAGGCGGGGGCTACACTAACGGATTCCGGGACTTGCGCGCTGCCCTGGATGTTCCTCGCAGCGGGCCTCTCCCGGTCAGACACTACTCCCTGGGCAGCGCCGGAGGCCTGTCCAGCCGCTGCCGGACGCCCAGCTGCAACTACTACGGTCACCCCGAGACGGGCAACTACTGCTCCTGCTGCTACCGAGAGGAGCTGAAGAGGAGGGAGACGGAGCCAGCCATCCACAGGTTCTGAACAGACGGACTGACCAGAACTGGCTTTGTGGCCACCAACCACAAGGAAACTGATGGATGAGGTTTCTTGCTATAGGACGATACAGAGCCTGGCCCTCTTATCGCATCACTTCCTTTTCTAAAGGCAACACTGTGTGTGGAGAGCGTCCTGGACAGGATCAGTGCAGTGACTTCAGAGACTGGAGAGAAGGGGGCTGCGGCGAGCGTTAGACAATAGGACTGTGCACATCTCTTACATTTGTTGTGGCTCTtatgcaggctgtgtgtgtgtgtgtgagaactgcAAGCTCTCCTCCACTTTGTCCCCTTGTTGCCTTGCAGCTGTCTCCTCCTGGTGGAGAGAATGTATACGGCAGGCGATACACGCACACTGACAttcacattacacacacaaactaacactGCACAAGCACAACCAGAAACTTCTTGATTATCACTCTTCTCCATATGTGGAGACGACCTATATTTGGCCCTGTAAATTGGTGGTATTTTAACATACGAGTCAACCCTTCAATGTCTTGTTAGTCTTTTCAACCAGAGGGTTAGAGATGTATGCAGACGGACTAGCCCAGGGCATTACTGTTACCGGGTGCTCATGTATGACTTGGGAATGAACAGTGCTCTTTCCTGATGAGTAGTTGGGTTTCTTTTGCGTTGGTCCTCGCTCTTGTAATGCAAATTGAAACTACAGTATTATGTTACAGTGGTTGCTGTTCTGGCTTCAACGGTGCTGCTAATGTTCCAGAATGCAACAGACCTCTATTCAAGTTCATCTCAAATATAACAAGCAAAACAGATAGTCCTATCCACCCTTAAGATGCCTTTTATGGCAAAGTAGCCATCCAATCTAAAATCACCACTGTGTCCAGATGTCAGTCAAGTCCATTTTTATACATCTACCATGTTTAGATGTCTCCCAGTATCAATTATAGAACATACATGGCGGAGTACTGTGGTAGATATTCCCAAATGGCTAATATACAGTTTTTAATAAGGTTGCTAGATTCTTACTGTTCCTGGCTTGTTTTTGTCATTTTATATCCATCATGAAAATGAGGCATTTCAATAATATGCTGGTACATTTAGGGTCATCCAACACTACTAAACTGGCATTCAAAACCAACTCCCCTCGCATTTTCAGCTCAAGACCTCAAGGTAATCAGTACATGCTAAACTGATGAACGTTCACATTTTGGTTGAAAAAGACACTGTCCATTGTAACATTGTAACTCTGCTTCTCTTGTGGCTGAGAAAGGTAACAGGTATTTTATGGAATCTTGTCCATAGGGCTGTGTTACTTTAGTCTAAATATTAATAACTTTTCGTGAATACCTACTTATGGCAAACCCCAAATTCCTGACATGGACACCCCATTGATACGATTAAAAACAAGTTGGATTATTTAACCCAAATCCCCTTCAAGTCCTAATTGAGGGCATTGTGTTGATTCCAAACAAGTGACTGACCCCCGTCGCTTAACCTCTCTGCACAAATTCAAGCACTTTCCTAATGTCCGTAGACATTTTGTTACCGTTTTGAAGGTATCTGACTGTTATGTTGTCCTTAGGTCATGTCAGAACTGTAGACACTGCACCTCTACTTGCAGGAAGGCAGACGCATGGGCTAGAACCCCTTCGCTAAGGATTCAGTTACCATGGGAACAGCTTTTTGGTGCCAGTGTTGTGGTTTAACTCTATTTCCTAGTTGCCTTTTTTCAGTCTCTTGTCCTTGTGGCATTACAAtcttgtttgtatgttttacaaaATGTGCATCAGGTGTACAATACTCGTTTTTGCTGCAGTTTCTCGTCTAGTGTTTTTGTACCCTACTCAGTGTAAATCCcctgtttttaaatattttcatTTTGCACCCAGACATGGAGTCATTTTCGAAGATCATAACAAAGTGATTTAGagatcaaatgtaaaatatatatatatatacatatacatatacatatacatatatacatatgtatatatacagtgccttgcgaaagtattcggcccccttgatctttgcgatcttttgccaca
>TU272243
CCTCAGAGCCTGTAGGCGGGGGCTACACTAACGGATTCCGGGACTTGCGCGCTGCCCTGGATGTTCCTCGCAGCGGGCCTCTCCCGGTCAGACACTACTCCCTGGGCAGCGCCGGAGGCCTGTCCAGCCGCTGCCGGACGCCCAGCTGCAACTACTACGGTCACCCCGAGACGGGCAACTACTGCTCCTGCTGCTACCGAGAGGAGCTGAAGAGGAGGGAGACGGAGCCAGCCATCCACAGGTTCTGAACAGACGGACTGACCAGAACTGGCTTTGTGGCCACCAACCACAAGGAAACTGATGGATGAGGTTTCTTGCTATAGGACGATACAGAGCCTGGCCCTCTTATCGCATCACTTCCTTTTCTAAAGGCAACACTGTGTGTGGAGAGCGTCCTGGACAGGATCAGTGCAGTGACTTCAGAGACTGGAGAGAAGGGGGCTGCGGCGAGCGTTAGACAATAGGACTGTGCACATCTCTTACATTTGTTGTGGCTCTtatgcaggctgtgtgtgtgtgtgtgagaactgcAAGCTCTCCTCCACTTTGTCCCCTTGTTGCCTTGCAGCTGTCTCCTCCTGGTGGAGAGAATGTATACGGCAGGCGATACACGCACACTGACAttcacattacacacacaaactaacactGCACAAGCACAACCAGAAACTTCTTGATTATCACTCTTCTCCATATGTGGAGACGACCTATATTTGGCCCTGTAAATTGGTGGTATTTTAACATACGAGTCAACCCTTCAATGTCTTGTTAGTCTTTTCAACCAGAGGGTTAGAGATGTATGCAGACGGACTAGCCCAGGGCATTACTGTTACCGGGTGCTCATGTATGACTTGGGAATGAACAGTGCTCTTTCCTGATGAGTAGTTGGGTTTCTTTTGCGTTGGTCCTCGCTCTTGTAATGCAAATTGAAACTACAGTATTATGTTACAGTGGTTGCTGTTCTGGCTTCAACGGTGCTGCTAATGTTCCAGAATGCAACAGACCTCTATTCAAGTTCATCTCAAATATAACAAGCAAAACAGATAGTCCTATCCACCCTTAAGATGCCTTTTATGGCAAAGTAGCCATCCAATCTAAAATCACCACTGTGTCCAGATGTCAGTCAAGTCCATTTTTATACATCTACCATGTTTAGATGTCTCCCAGTATCAATTATAGAACATACATGGCGGAGTACTGTGGTAGATATTCCCAAATGGCTAATATACAGTTTTTAATAAGGTTGCTAGATTCTTACTGTTCCTGGCTTGTTTTTGTCATTTTATATCCATCATGAAAATGAGGCATTTCAATAATATGCTGGTACATTTAGGGTCATCCAACACTACTAAACTGGCATTCAAAACCAACTCCCCTCGCATTTTCAGCTCAAGACCTCAAGGTAATCAGTACATGCTAAACTGATGAACGTTCACATTTTGGTTGAAAAAGACACTGTCCATTGTAACATTGTAACTCTGCTTCTCTTGTGGCTGAGAAAGGTAACAGGTATTTTATGGAATCTTGTCCATAGGGCTGTGTTACTTTAGTCTAAATATTAATAACTTTTCGTGAATACCTACTTATGGCAAACCCCAAATTCCTGACATGGACACCCCATTGATACGATTAAAAACAAGTTGGATTATTTAACCCAAATCCCCTTCAAGTCCTAATTGAGGGCATTGTGTTGATTCCAAACAAGTGACTGACCCCCGTCGCTTAACCTCTCTGCACAAATTCAAGCACTTTCCTAATGTCCGTAGACATTTTGTTACCGTTTTGAAGGTATCTGACTGTTATGTTGTCCTTAGGTCATGTCAGAACTGTAGACACTGCACCTCTACTTGCAGGAAGGCAGACGCATGGGCTAGAACCCCTTCGCTAAGGATTCAGTTACCATGGGAACAGCTTTTTGGTGCCAGTGTTGTGGTTTAACTCTATTTCCTAGTTGCCTTTTTTCAGTCTCTTGTCCTTGTGGCATTACAAtcttgtttgtatgttttacaaaATGTGCATCAGGTGTACAATACTCGTTTTTGCTGCAGTTTCTCGTCTAGTGTTTTTGTACCCTACTCAGTGTAAATCCcctgtttttaaatattttcatTTTGCACCCAGACATGGAG
>TU272244
TTTATGGCAAAGTAGCCATCCAATCTAAAATCACCACTGTGTCCAGATGTCAGTCAAGTCCATTTTTATACATCTACCATGTTTAGATGTCTCCCAGTATCAATTATAGAACATACATGGCGGAGTACTGTGGTAGATATTCCCAAATGGCTAATATACAGTTTTTAATAAGGTTGCTAGATTCTTACTGTTCCTGGCTTGTTTTTGTCATTTTATATCCATCATGAAAATGAGGCATTTCAATAATATGCTGGTACATTTAGGGTCATCCAACACTACTAAACTGGCATTCAAAACCAACTCCCCTCGCATTTTCAGCTCAAGACCTCAAGGTAATCAGTACATGCTAAACTGATGAACGTTCACATTTTGGTTGAAAAAGACACTGTCCATTGTAACATTGTAACTCTGCTTCTCTTGTGGCTGAGAAAGGTAACAGGTATTTTATGGAATCTTGTCCATAGGGCTGTGTTACTTTAGTCTAAATATTAATAACTTTTCGTGAATACCTACTTATGGCAAACCCCAAATTCCTGACATGGACACCCCATTGATACGATTAAAAACAAGTTGGATTATTTAACCCAAATCCCCTTCAAGTCCTAATTGAGGGCATTGTGTTGATTCCAAACAAGTGACTGACCCCCGTCGCTTAACCTCTCTGCACAAATTCAAGCACTTTCCTAATGTCCGTAGACATTTTGTTACCGTTTTGAAGGTATCTGACTGTTATGTTGTCCTTAGGTCATGTCAGAACTGTAGACACTGCACCTCTACTTGCAGGAAGGCAGACGCATGGGCTAGAACCCCTTCGCTAAGGATTCAGTTACCATGGGAACAGCTTTTTGGTGCCAGTGTTGTGGTTTAACTCTATTTCCTAGTTGCCTTTTTTCAGTCTCTTGTCCTTGTGGCATTACAAtcttgtttgtatgttttacaaaATGTGCATCAGGTGTACAATACTCGTTTTTGCTGCAGTTTCTCGTCTAGTGTTTTTGTACCCTACTCAGTGTAAATCCcctgtttttaaatattttcatTTTGCACCCAGACATGGAG
>TU272242
GCGAGCCTGAGCATCCTGCGGGCGGCCATGCAGGGCGAGAGGAAGTTCATCTTCGCTGGCCTGCTCATCACCAGCAACCGCCAGCCCTTCCAGGAGGAGATGATCCAGCGCTACCTGTCTGACGCTGAGGAGCGCTTCCGGGTAGAGCAGGAGCAGCAGCGGAGAGAGGCAGAGCGGAAAGGAAGCACCAACGGCATCCAGCAGCCCAAGAAGGAGGCAACGGCAGGCACAGAGGTGGGCTACCGCACCTATGAACCGAAAGAGGAGTCGACTGAGAGCTCACCGCCCAACTTCAGCCACCTCAAGTCGTCCTCATTCAACCCCTCACTCTACTCCGGCGTGGTGCCCATCCCCCGGCCAACCTTCATGGACCAGCCGCCCTCCCCGGCCCTGCTCACTCAGCACCCACA
>TU272241
TACGGGGGGAAAGGAAAAGCCCAAGAAGGAGAAAGACAAAGACAAGAAAAGGGCTGACTCTGTGGCCAACAAGCTGGGCAGCTTCGGCAAGAGCCTGGGCAGCAAGCTTAAAAAGAACGTGGGCGGGCTGATGACGGGGAAGAATGCAGGAGGCAGCGGGGCCAAGCAGGAGGGCACAGAGAAGAAGAAAAGTTCGCTGAGGGGGCGGAAGGGCAGCAAGGACAGCTCGCCTTCGGCCCACGCCTCTGAGGACTCTGGGAAGGGCTCGCCGTCGTCGGGCAGTGAGCGTCAGAATGGCACGGGCAGTGGCAGCAGCGAGAGTGACCCGTATAAGTACAGTGCCGACGTGAAGGCGAGCCTGAGCATCCTGCGGGCGGCCATGCAGGGCGAGAGGAAGTTCATCTTCGCTGGCCTGCTCATCACCAGCAACCGCCAGCCCTTCCAGGAGGAGATGATCCAGCGCTACCTGTCTGACGCTGAGGAGCGCTTCCGGGTAGAGCAGGAGCAGCAGCGGAGAGAGGCAGAGCGGAAAGGAAGCACCAACGGCATCCAGCAGCCCAAGAAGGAGGCAACGGCAGGCACAGAGGTGGGCTACCGCACCTATGAACCGAAAGAGGAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594163.2 False 5340 mRNA 0.52 12 24767049 24799511
TU272243 False 2129 lncRNA 0.45 1 24767203 24769331
TU272244 False 1059 lncRNA 0.39 1 24767203 24768261
TU272242 False 410 TUCP 0.41 1 24769562 24769971
TU272241 True 620 TUCP 0.61 1 24769704 24770323

Neighbor

gene id symbol gene type direction distance location
LOC110515141 LOC106581821 coding downstream 1566 24727603 ~ 24765483 (-)
LOC110515097 LOC106605292 coding downstream 54316 24657810 ~ 24712733 (-)
LOC110505156 NA coding downstream 119506 24646359 ~ 24647543 (-)
LOC110515085 LOC100380645 coding downstream 147932 24602621 ~ 24619117 (-)
LOC110515051 LOC106581796 coding downstream 190639 24565713 ~ 24576410 (-)
LOC100305168 rbm8a coding upstream 8914 24808425 ~ 24815467 (-)
LOC110515174 NA coding upstream 20332 24819843 ~ 24825136 (-)
LOC118944507 NA coding upstream 43939 24843450 ~ 24844713 (-)
LOC110515183 LOC106581871 coding upstream 85117 24884628 ~ 24893913 (-)
LOC110515194 LOC106581883 coding upstream 104753 24904264 ~ 24920014 (-)
G238316 NA non-coding downstream 47080 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 48491 24717738 ~ 24718558 (-)
G237877 NA non-coding downstream 206473 24560332 ~ 24560576 (-)
G237863 NA non-coding downstream 214069 24552693 ~ 24552980 (-)
G238414 NA non-coding upstream 129288 24928799 ~ 24931448 (-)
G238494 tap1 non-coding upstream 329591 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 350039 25149550 ~ 25149823 (-)
LOC110515384 LOC106582009 non-coding upstream 371815 25171287 ~ 25236536 (-)
G238588 NA non-coding upstream 379125 25178636 ~ 25178846 (-)
G237832 NA other downstream 245505 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 583085 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 986914 23771511 ~ 23780158 (-)
G237047 NA other downstream 1578018 23157109 ~ 23189031 (-)
G235881 NA other downstream 2192060 22573833 ~ 22574989 (-)
LOC110515208 LOC106581894 other upstream 137005 24936516 ~ 25052970 (-)
LOC110515750 LOC106582146 other upstream 1023845 25822812 ~ 25825108 (-)
G240409 NA other upstream 1769590 26569101 ~ 26569522 (-)
G240464 NA other upstream 1875081 26674592 ~ 26675033 (-)
LOC110515154 LOC106605289 other upstream 231 24767049 ~ 24799511 (-)

Expression


Co-expression Network