LOC100305168 (rbm8a)


Basic Information

Item Value
gene id LOC100305168
gene name rbm8a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24808425 ~ 24815467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581799.2
CAGGCAGGGATGCTTCCCGGATATCATCAACGTTCACGCGCATTAGCGCAAAAAACAGGAGCTAACAACATGGCGGACGTACTAGATCTTCATGAAGCGGGAGGCGAGGACTTTGCTATGGATGAGGATGACAGCATCCACAAGTTAAAAGAAAAGGCAAAGAGGAGAAAGGGACGAGGTTTTGGTTCAGAGGAGGGAGCGAGGTCCAGAGTGAGAGAGGACTATGATACAGTGGAGCAGGATGGAGACGAGCCAGGTCCTCAGAGATCTGTGGAGGGTTGGATCCTTTTCGTGACTGGGGTACATGAAGAGGCAACTGAGGAGGACATCCACGACAAGTTTGCAGAGTTTGGAGAGATCAAGAACTTACATCTGAACCTGGACCGAAGAACAGGTTACCTCAAGGGTTATGCGCTGGTGGAGTATGAGACATACAAAGAAGCCCAGGCAGCCATGGAAGGGTTGAATGGTCAGGACATGATGGGCCAGCCTATCAGTGTGGACTGGGGCTTTGTCAGGGGACCACCCAAGAGCAAGAGGAGGGGTGGTGGACGGAGACGCAGCAGGAGTCCAGACAGGAGACGACGTTGATTCCCCACATCTGCTCTTGAAAGGCTTCTTTTTATTTCATTACATTTGCGTTCTGTAATAGCGTTAACTTTACTGATGTCTATGGTAATTAACTGTTTAATTGCAAATGGCCCTGACAAGTGTGCTTTAGAACCAAAATTATTAGTTGTTCCAGCAAAATGACAGGgttgccatttttttttttactgaaacaAACACCAAATACACTGATCGGTGAAACTTTGTTTGCATCAACAACAAACTGTTTtaaagtagtggtatgtgttTTCTTATGGATCCCTCTATTCTGTTCATTGTTAGAACCATAGGATCCTTGGTTTTCatgatgaacttagccttaagatgcttttggaaaTCTGTGCATTTGTGTGgccttttttttatgtattacatgggaataaaacatttttaagtgAG
>XM_021581795.2
TAACTAATGAATACACACCAGGCAGGGATGCTTCCCGGATATCATCAACGTTCACGCGCATTAGCGCAAAAAACAGGAGCTAACAACATGGCGGACGTACTAGATCTTCATGAAGCGGGAGGCGAGGACTTTGCTATGGATGAGGATGGTGATGACAGCATCCACAAGTTAAAAGAAAAGGCAAAGAGGAGAAAGGGACGAGGTTTTGGTTCAGAGGAGGGAGCGAGGTCCAGAGTGAGAGAGGACTATGATACAGTGGAGCAGGATGGAGACGAGCCAGGTCCTCAGAGATCTGTGGAGGGTTGGATCCTTTTCGTGACTGGGGTACATGAAGAGGCAACTGAGGAGGACATCCACGACAAGTTTGCAGAGTTTGGAGAGATCAAGAACTTACATCTGAACCTGGACCGAAGAACAGGTTACCTCAAGGGTTATGCGCTGGTGGAGTATGAGACATACAAAGAAGCCCAGGCAGCCATGGAAGGGTTGAATGGTCAGGACATGATGGGCCAGCCTATCAGTGTGGACTGGGGCTTTGTCAGGGGACCACCCAAGAGCAAGAGGAGGGGTGGTGGACGGAGACGCAGCAGGAGTCCAGACAGGAGACGACGTTGATTCCCCACATCTGCTCTTGAAAGGCTTCTTTTTATTTCATTACATTTGCGTTCTGTAATAGCGTTAACTTTACTGATGTCTATGGTAATTAACTGTTTAATTGCAAATGGCCCTGACAAGTGTGCTTTAGAACCAAAATTATTAGTTGTTCCAGCAAAATGACAGGgttgccatttttttttttactgaaacaAACACCAAATACACTGATCGGTGAAACTTTGTTTGCATCAACAACAAACTGTTTtaaagtagtggtatgtgttTTCTTATGGATCCCTCTATTCTGTTCATTGTTAGAACCATAGGATCCTTGGTTTTCatgatgaacttagccttaagatgcttttggaaaTCTGTGCATTTGTGTGgccttttttttatgtattacatgggaataaaacatttttaagtgAG
>NM_001165072.1
GCAAAAAACAGGAGCTAACAACATGGCGGACGTACTAGATCTTCATGAAGCGGGAGGCGAGGACTTTGCTATGGATGAGGATGGTGATGACAGCATCCACAAGTTAAAAGAAAAGGCAAAGAGGAGAAAGGGACGAGGTTTTGGTTCAGAGGAGGGAGCGAGGTCCAGAGTGAGAGAGGACTATGATACAGTGGAGCAGGATGGAGACGAGCCAGGTCCTCAGAGATCTGTGGAGGGTTGGATCCTTTTCGTGACTGGGGTACATGAAGAGGCAACTGAGGAGGACATCCACGACAAGTTTGCAGAGTTTGGAGAGATCAAGAACTTACATCTGAACCTGGACCGAAGAACAGGTTACCTCAAGGGTTATGCGCTGGTGGAGTATGAGACATACAAAGAAGCCCAGGCAGCCATGGAAGGGTTGAATGGTCAGGACATGATGGGCCAGCCTATCAGTGTGGACTGGGGCTTTGTCAGGGGAACCCAAGAGCAAGAGGAGGGGTGGTGGACGGAGACGCAGCAGGAGTCCAGACAGGAGACGACGTTGATTCCCCACATCTGCTCTTGAAAGGCTTCTTTTTATTTCATTACATTTGCGTTCTGTAATAGCGTTAACTTTACTGATGTCTATGGTAATTAACTGTTTAATTGCAAATGGCCCTGACAAGTGTGCTTTAGAACCAAAATTATTAGTTGTTCCAGCAAAATGACAGGgttgccatttttttttttactgaaacaAACACCAAATACACTGATCGGTGAAACTTTGTTTGCATCAACAACAAACTGTTTtaaagtagtggtatgtgttTTCTTATGGATCCCTCTATTCTGTTCATTGTTAGAACCATAGGATCCTTGGTTTTCatgatgaacttagccttaagatgcttttggaaaTCTGTGCATTTGTGTGgccttttttttatgtattacatgggaataaaacatttttaagtg

Function

symbol description
rbm8a Predicted to enable mRNA binding activity. Predicted to be involved in RNA splicing and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and exon-exon junction complex. Human ortholog(s) of this gene implicated in thrombocytopenia-absent radius syndrome. Orthologous to human RBM8A (RNA binding motif protein 8A).

NR:

description
RNA-binding protein 8A isoform X1

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12876 RBM8A, Y14; RNA-binding protein 8A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581799.2 False 1008 mRNA 0.45 6 24808425 24815449
XM_021581795.2 False 1032 mRNA 0.45 6 24808425 24815467
NM_001165072.1 True 963 mRNA 0.44 7 24808427 24815402

Neighbor

gene id symbol gene type direction distance location
LOC110515154 LOC106605289 coding downstream 8914 24767049 ~ 24799511 (-)
LOC110515141 LOC106581821 coding downstream 42942 24727603 ~ 24765483 (-)
LOC110515097 LOC106605292 coding downstream 95692 24657810 ~ 24712733 (-)
LOC110505156 NA coding downstream 160882 24646359 ~ 24647543 (-)
LOC110515085 LOC100380645 coding downstream 189308 24602621 ~ 24619117 (-)
LOC110515174 NA coding upstream 4376 24819843 ~ 24825136 (-)
LOC118944507 NA coding upstream 27983 24843450 ~ 24844713 (-)
LOC110515183 LOC106581871 coding upstream 69161 24884628 ~ 24893913 (-)
LOC110515194 LOC106581883 coding upstream 88797 24904264 ~ 24920014 (-)
LOC110515208 LOC106581894 coding upstream 122162 24936516 ~ 25052970 (-)
G238316 NA non-coding downstream 88456 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 89867 24717738 ~ 24718558 (-)
G237877 NA non-coding downstream 247849 24560332 ~ 24560576 (-)
G238414 NA non-coding upstream 113332 24928799 ~ 24931448 (-)
G238494 tap1 non-coding upstream 313635 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 334083 25149550 ~ 25149823 (-)
LOC110515384 LOC106582009 non-coding upstream 355859 25171287 ~ 25236536 (-)
G238588 NA non-coding upstream 363169 25178636 ~ 25178846 (-)
G237832 NA other downstream 286881 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 624461 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 1028290 23771511 ~ 23780158 (-)
G237047 NA other downstream 1619394 23157109 ~ 23189031 (-)
LOC110515750 LOC106582146 other upstream 1007889 25822812 ~ 25825108 (-)
G240409 NA other upstream 1753634 26569101 ~ 26569522 (-)
G240464 NA other upstream 1859125 26674592 ~ 26675033 (-)

Expression


Co-expression Network