Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110515164 |
| gene name | LOC106581855 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 24817575 ~ 24819244 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| type-4 ice-structuring protein LS-12-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021594172.2 | True | 677 | mRNA | 0.52 | 4 | 24817575 | 24819244 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515127 | LOC106581815 | coding | upstream | 98946 | 24711483 ~ 24718629 (+) |
| LOC118947812 | m4a8a | coding | upstream | 465222 | 24342562 ~ 24352353 (+) |
| LOC110514930 | LOC106605309 | coding | upstream | 504163 | 24299707 ~ 24313412 (+) |
| LOC110514864 | LOC106580670 | coding | upstream | 558028 | 24226912 ~ 24261294 (+) |
| LOC110505138 | LOC106580604 | coding | upstream | 609946 | 24204483 ~ 24207629 (+) |
| LOC110503966 | LOC106581868 | coding | downstream | 28283 | 24847527 ~ 24876184 (+) |
| LOC118948035 | LOC106605281 | coding | downstream | 155382 | 24974626 ~ 24976484 (+) |
| LOC110515267 | LOC106605278 | coding | downstream | 257095 | 25076339 ~ 25101218 (+) |
| LOC110515353 | pbx2 | coding | downstream | 293395 | 25112639 ~ 25119442 (+) |
| LOC110505167 | tap1 | coding | downstream | 307935 | 25127179 ~ 25135494 (+) |
| G238028 | NA | non-coding | upstream | 8695 | 24808437 ~ 24808880 (+) |
| G238052 | LOC106581836 | non-coding | upstream | 40687 | 24776660 ~ 24776888 (+) |
| G238051 | NA | non-coding | upstream | 41349 | 24775975 ~ 24776226 (+) |
| G237985 | otud7b | non-coding | upstream | 47049 | 24769614 ~ 24770526 (+) |
| G237984 | NA | non-coding | upstream | 52223 | 24764810 ~ 24765352 (+) |
| G238033 | NA | non-coding | downstream | 35525 | 24854769 ~ 24885461 (+) |
| G238029 | NA | non-coding | downstream | 85055 | 24904299 ~ 24905517 (+) |
| G238129 | NA | non-coding | downstream | 118360 | 24937604 ~ 24953475 (+) |
| G238238 | NA | non-coding | downstream | 289878 | 25109122 ~ 25110592 (+) |
| G238196 | LOC106581966 | non-coding | downstream | 301102 | 25120346 ~ 25120658 (+) |
| G238050 | NA | other | upstream | 41630 | 24775279 ~ 24775945 (+) |
| G238047 | NA | other | upstream | 51212 | 24765666 ~ 24766363 (+) |
| G238034 | NA | other | upstream | 67192 | 24749405 ~ 24750383 (+) |
| G236753 | NA | other | upstream | 761908 | 24055319 ~ 24055667 (+) |
| LOC110514733 | LOC106580799 | other | upstream | 888488 | 23908750 ~ 23932207 (+) |
| G238540 | LOC106582009 | other | downstream | 376043 | 25195287 ~ 25199234 (+) |
| G239026 | NA | other | downstream | 721525 | 25540769 ~ 25541613 (+) |
| G239697 | LOC106582257 | other | downstream | 1394398 | 26213642 ~ 26220183 (+) |
| G239752 | meox2 | other | downstream | 1508164 | 26327408 ~ 26328331 (+) |
| G240244 | NA | other | downstream | 2231942 | 27051186 ~ 27051954 (+) |
