LOC110515174


Basic Information

Item Value
gene id LOC110515174
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24819843 ~ 24825136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472214.2
TGAGACAGCCTGTGTCCTTACTCCTTAGAGACCAAAGCATACAGCACTCTTCTTAAAGACAAGGCGTTTGGAACTGTAGATATTGGATTGGCCCCCACTTTTAACAGCCCAAAACCATCTTGAAGTGTGGCTTCCATGTAGTGCTTTCTTATTTTCCTctcttttctaaaatttttgtcCAATTCTTAAGTGCTTTTCAGGCTCTCATAATAGCCCACCGTTTCTTTTCTGTCAGGGTTCGCTGTTTTCCACATGCAGATCAAGCCGTCTGGATGACCCTTCTAGGTGCCTAAATTGAAACATGACCCGTTCACCCTTTTCCATTGACTTTCCAAAGCAATGAGGGTATGGAAGGGACTGCAGAGATTTTTGAGAGTGATGTTTTCCATCTTCCCGCGCTGCCAGTTGAGAGGACAAAATTCGAAAGACAGTTACGTGGTAGGCTATTCCTCGGAAGTCACTCATGTCAGGCTTCTCGGATACACAACTATGCTGCGCGGCTGTCAGCGTTGTGGTCTCATTCAACACTGGAGACTTTGGCGCCATCCCTGCGGACACCACTTCTGCCGTGAGTGCATGGATCAGATCATAGATGATGGTTTCCGCGACATCGAGGGGCTTGGCTCAAGTCCCTGTCCACAGTGTAAATCAGTTATAGCCTATTAAATGTGTAATCGTGACTGTATGTTAGTGCCTTTTTCTGACTTTGTGTAACCTTTTCTTTTTCTATGCACTTTGTAGTCCCTGCATGTCTCTATTGCCCAGGCAATTCAGCAGAACTATGATATCATCAAGACAAAGGACAAGCAATACTACTTCATCACTTATCTAGTCAGTCAGATCAGATTTTTATTGTCATCTTTAAAACATTCTATTCTATgcattaatgagtgtgtgtaggaTGACAAGGTTACAATCAATGACATGACTATATCTGAATATAACAATCTAAATTTAGCTGATGCTAAACTCCATCCAATACAAACAACTATTTAAGAATATTAACAACTCGGGCTCCTAGGCAAGGTTGGAGAGAAACTGATTGCATGTAATCAtgtacatgtaatctgattacaaaaaaaGTAGTTCCAGCTAAAATTGTGTAATCAGGTTACAGAtactttgaaaaactagatgattactccTTGGATTACTTGCTTGCGACAAAATACATTAACACTTTTCCTttcctcaatgacattcaattcagcctTGAAAAAATGGGCAAATttagtttgttccacctgagcgagtctgaccacaaattagagaccactatgatgacacaccaa

Function

NR:

description
hypothetical protein cypCar_00029576

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472214.2 True 1292 mRNA 0.41 3 24819843 24825136

Neighbor

gene id symbol gene type direction distance location
LOC100305168 rbm8a coding downstream 4376 24808425 ~ 24815467 (-)
LOC110515154 LOC106605289 coding downstream 20332 24767049 ~ 24799511 (-)
LOC110515141 LOC106581821 coding downstream 54360 24727603 ~ 24765483 (-)
LOC110515097 LOC106605292 coding downstream 107110 24657810 ~ 24712733 (-)
LOC110505156 NA coding downstream 172300 24646359 ~ 24647543 (-)
LOC118944507 NA coding upstream 18314 24843450 ~ 24844713 (-)
LOC110515183 LOC106581871 coding upstream 59492 24884628 ~ 24893913 (-)
LOC110515194 LOC106581883 coding upstream 79128 24904264 ~ 24920014 (-)
LOC110515208 LOC106581894 coding upstream 112493 24936516 ~ 25052970 (-)
LOC110515238 LOC106581944 coding upstream 233458 25058594 ~ 25072664 (-)
G238316 NA non-coding downstream 99874 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 101285 24717738 ~ 24718558 (-)
G237877 NA non-coding downstream 259267 24560332 ~ 24560576 (-)
G238414 NA non-coding upstream 103663 24928799 ~ 24931448 (-)
G238494 tap1 non-coding upstream 303966 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 324414 25149550 ~ 25149823 (-)
LOC110515384 LOC106582009 non-coding upstream 346190 25171287 ~ 25236536 (-)
G238588 NA non-coding upstream 353500 25178636 ~ 25178846 (-)
G237832 NA other downstream 298299 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 635879 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 1039708 23771511 ~ 23780158 (-)
G237047 NA other downstream 1630812 23157109 ~ 23189031 (-)
LOC110515750 LOC106582146 other upstream 998220 25822812 ~ 25825108 (-)
G240409 NA other upstream 1743965 26569101 ~ 26569522 (-)
G240464 NA other upstream 1849456 26674592 ~ 26675033 (-)

Expression


Co-expression Network