LOC110515194 (LOC106581883)


Basic Information

Item Value
gene id LOC110515194
gene name LOC106581883
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24904264 ~ 24920014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973039.1
TGGCGGAGGTCATAACTTTgtagctgtggtaactagtgacggtCCCGCGCGAACCTTGGCACGAACGTTTCATGAGAAGTCTCGCGCTGTTCAGGCGGTCGCTGTTTAATGGCCGCCCTCTTACTCGAAGCAATGTCTGAAACGGGGAATAACACAAGGAACCCATCGGAGTGTGATAGCTGACCGGGAATTAACAAACATACTGTGCCATTCCCTCTCCCAAACGGGTTCCGAACGGATGGGCAGTGTGGGGGGGATTGCCAAGCGACCTAAGATACGCTagcgggagaggagagagctgctagctagctagtcaacACAGTTGTCACTGCCGGTGGGGCAAGCCCGGAGCAACCCTGACAAGAGTGGGGTTGAAGAGGGTGGGAACGCAGACTCTTGGACTGGAGCGTGTGACTCTTGGCACCAGATGCTAACATGAGTGGACCTGGGCAGGATAGCGAGCCAGAGGCAAAAGTCCTCCTCATCAAGCGGCTATACAGGGCAGTGGTTGAGTCGGTACACAAGCTGGATGTCATCATTGGCAGCAAGTCATCGTACAGGGAGGTCTTCAAGCCTGAAAACATCAGCCTTCGCaacaaGTTGAGGGAGCTGTGTGTGAAGCTGATGTTTCTCCACCCTGTGGACTATGGTCGCAAGGCTGAGGAGCTTCTGTGGAGGAAGGTCTACTACGAGGTCATCCAGGTCATCAAGACCAACAAGAAGCACATCCACAGTCGCAGTGCCCTGGAATGCGCCTACAGGACTCACCTGATAGCCGGCGTGGGCTTCTTCCAGCACCTGCTGCTCTACATCCAGTCCCACTACCAGCTGGAAATGCAGGACTGCATCGACTGGACCCATGTCACCGACCCCCTCatcgGTCGGAAGAAGCCGGTATCAGCCACCCTTAAGGAGATGGAGTGGGCCACAATGGCCTGCCATCGCTGCCTGGTGTACCTGGGAGATCTAGCCCGTTACCAGAACGAATTGGCTGGGGTGGAGGCTGAGCAGCTGGCAGAGCGGTTCTACCACCAGGCCCTGTCTGTCACTCCGCATGTAGGAATGCCTTTCAATCAGTTAGGTACACTGGCGGGGAGTAAATTCTACAACGTGGAGGCCACCTATTACTACCTACGCTGTATACAGTCGGAGACTCCCTTCGAAGGGGCCTATGGGAATTTGAAGCGTCTGTTTGATAAAGCAGCTAAGATGTACCACCAGGTGAAGAAACAGGAGATGAAGAAGCTGTCTCCCTCACGGCAAAGATCCAAGGACATCAAGCAACTTCTAGTGAGCTTCATGTACCTGCAGAGTCTACTGCAGCCCAAGAACAGTCTGCTGGAGACAGAGTTGACCTCTCTGTGTCAGTCGGTGCTGGAGGATTTTAACTTGGTGCTGTTTTACCTGCCCTCGCCGCCACACGGCCACGAGGCCACTTCCCTCAGCGAGGAGGAGCATGAGGAGCACGAATCGCCCTGCGCCCTGCTCCCCGACGCCCTCGTCTTCAAGATGGTGGTCACCTGCCTCATGGTGGTGCACAGCCTGAAGCGGGGAGGGTCAAAGCAGTACAGTGCGTCAATAGCCTTCACGCTGGCCCTCTTCTCCCACCTGGTGAACCATGTCAACATCCGCCTGCAGGCTGAgctggaggagggggagagcCAGGTGCCCCCGCTGCAGAACGACAACACAGACGACTCTGAGTTGAGAGACCCGTCTGACTCGTTGACCTCGGAAGAGAGGCCCCTGCAGAATGGCTCCCTAGACCATGAGGAGGATGAGGTGGGTCACCGGAGCACCGTGGCCCAGAAAGCAGGCGTCGGTGAGCGGAaggcagaggaggagaaacagaagcaAAAGAAGTATGCCCGCCTCTCCATGATGCGCCGCCGCCGCTGCGCCACCCGCAAAGAAGACGAGAGCGACCTGAGCGAGGGTTTCGAGAGcgacgaagaggaggaggaggaagaacagagGGGCTGCGCCGACTCCGGGGACGGCGCCTCGGGACCCTCACTCACCCCCTCCTCGCTGGGAAAGGAGAGCAAGAGCAGGAGGGAGCACCCGACAGAGGGGACCTGGGAGAGCGCCTCGGAGGAAGACGAGGAGGGGAGCACGGCCTTCGACGTGGAGACTGACTCGGACATGAACAGCCAGGAGTCCCGCTCCGACTTGGAGGATATAGAGGACTCGGAAACCCCGGAGAacttggacacacctcctcaggGGGAGGTGCAGCCTGAAGAcgacgatgatgaggaggaggagcaagCCTATCCCAGGGAGGGCGGAGATGGGGACACCCCTCCGGCCACCAACGGCCCACTCCTGCCCAGCGACCCCAGTATCAGCAGTAACCTCCAGGCCATGTCATCCCAGCTGTTCCAGGCCAAGCGCTGCTTCCGCCTGGCGCCCACCTTCAGCAATGTGCTGCTGAGGCCCCACAGCTCCGCCACCAACTCCACACCCAACCCCACTGATCCAGATGCCGCCTCCACCACCCCCTCCCAGGAGACCCCTCCTCCCCCGGGGGACTCACCCTGCGACGCTGGCCCCGGCACTGCCAACGGAACCAATGACAATGAGGTGGATTCCGATTCAGAGTGTAGCGTGCACAGCAACCAATCAGTACACAGCGAGAAGACCCTGTCGGAGAGACTGGAGATTCTGACCAATCAGGGGCTCATCCAGGTGGTCAAGGTGTTTGTGGATTGGCTGAGAACCAACACTGACATTATCCTCATGTGTGCACAGAGTTCTCAGAGCCTATGGAACAGACTGTCTGTGCTACTCAATCTGCTGCCTGACGGGAGCAAGATGCTGGAAGCAGAGCTGGGTCTGAACACTGAGGTGACGGAGCTGCTGAGTGATTGTGAGCAGCCTGGCCTGGTCCAGACCCTGCTGCTGCCTGAGGACCTGGCCCTGCGACACCTACCTGCGCTCAACCTGGCCCACCGCCACCTCGACTACACCCGCCCCAGACCTTCCCTCAGCCCCGTACAGGAGTGTGTGGTGCGCGTGTGCTGCATCCGCAGCTTTGGCCACTTCCTCACCAATCTCCAATGCAACGTACTGCACTTCAACCCGGAGGCGGGCATCTTCACCAGCATCAGCCAATCAGAGCAGGACAACCTGGTGCAGCAGGCCAAGGCCCAGTTCCGCATGgcagaggaggaggctCGACGAAACCGCCTGATGAGAGACATGGCTCAGCTCCGCCTACAGTTGGAGGTGTCTCAGCTAGAGGGCAGCCTGCAGCAGCCCAAGACCCAGTCCTCCATGTCTCCGTACCTGGTACCCGACTCTGCCGCCCTGTGCCAGCACCTCAACCTCCTCAGACATCTGGCTGGCAGTGGCtgcttcatcatcatcatcccccgCACAGTGATTGATGGCCTTGACCACCTGAAGAAGGAGAATGCCGGAGCGAGGGACGGTATCCGCTTCCTGGAGTCTGAGTTCCGTAAAGGCAACAGGTACATACGTTGCCAGAAGGAGTCGGGGAGGAGTTTTGAGAGGGACAAACTGAAACGCCAGGACATTGAAGCCTGGCATCTATACAAGACTGTGGACAGCTGTCGTCAGCTGACCGTCTCCCAGAGCAACGGAGACGAAGACACGGCTGGTATGGTCACTATTCTCACCGGTCACTCAGTGGAGGAGCTGTGTACCCGTTCTGCACCCATGAAGTCGGCCATCCAGGCAGTGGCGACAGCAGGCATGGAGCTGAAGAACATTGTGGAGTTCTACCGTCAGTGGAAGGAGATTGGCTGAGAGCGTTGAGCGGGCGAGGTCGGCATGGCGGACAGCTGATCacacactcactccctctctctctcccactctgttgctctgtctgtatctgcGTCTCCAAGGAAAATCAACTCTAGGAAAggaagtgaggggggggggggggtgagagagagagagagggtggaaaagTAAAGCAGTTGAAGGAAAGAAAAAGCGAGACACATGGGCAAAGGGGGCAATAAGAAACAGCAGAAGACCCCCAAACATAAAGAAGCGATCCCAGAGGTTGGTGAGAATTAAGTGGGGATGCTACGCACATAAAGTGCCCCTGGTTCACATCATAACCAGGCATATACTGTTTATGATAGAAACGAGTACATTACATGTCGAGAGAGAACCACTCATACACATTCATGCTCAGTTAAATCCATTGGTTTAGACATATAGAGCAGTGTTTCCCGTTTCCTCCTTTCCCTCTGTGTTGTGAAGGTGGGACTATGTCAGCCCTATGGctagctgggtctggtctggtaagGCAGGGGGGTGTGGGGTAAATCCCAGAAAGAGAACACATCTCTAGCGTGCCAAGCGTTGAGGCTATCGACACATCGGAGTCTCGTAGCTCATAGGGTTCAGGTCAATGGACGTACACTTCTCCAGGATTGTTTTCTTTCCTATCAGTTTTTTTGCGGTGTACTTTTTGTGTCCCGTGACTAATGTATTGTGTTATCTGTGTAGGATGAGGAGGAATAATGACAGGTTGTGCCCTGCTATTGTTTTAATTTGGATTTTATTTTTGTACCCAAATATACTTTATTTTGCGTTTTTGTAAGCTGTGCTGAATACACACAGGAATGAAGTGCAGGGGGGGGGATGGGGTTGTCTTGTATAGTTTTCCTAAACCAGTCTGCTAATCCTTCTGTTCTCAAATAAATAGTCCTGACTTTTGTGTCATGGTGCCGTTTTAGGAAGAGGTAGACTCGGGTGGGTCagctttgtgttgttgttgttagataTTATGGAGTCCGGGGCCTGCGGCTGTCCCAATATGGCGGTACAAGGTGTTTGTGTTTTGACCCTTGTGAACTCCATATATATCCCATCTACCATCATCACTAACTGTCCCATCATGCACAGTGCAAAGGAactctgtatatgtgtgtggccACGCATTGAACAATAAAATGAactcattttaaaatgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11125 SMG5, EST1B; protein SMG5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973039.1 True 4958 mRNA 0.55 22 24904264 24920014

Neighbor

gene id symbol gene type direction distance location
LOC110515183 LOC106581871 coding downstream 10351 24884628 ~ 24893913 (-)
LOC118944507 NA coding downstream 59551 24843450 ~ 24844713 (-)
LOC110515174 NA coding downstream 79128 24819843 ~ 24825136 (-)
LOC100305168 rbm8a coding downstream 88797 24808425 ~ 24815467 (-)
LOC110515154 LOC106605289 coding downstream 104753 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 coding upstream 17615 24936516 ~ 25052970 (-)
LOC110515238 LOC106581944 coding upstream 138580 25058594 ~ 25072664 (-)
LOC110515290 LOC106581956 coding upstream 181379 25101393 ~ 25106636 (-)
LOC110515302 LOC106581964 coding upstream 187808 25107822 ~ 25111116 (-)
notchl LOC106581966 coding upstream 199169 25119183 ~ 25125442 (-)
LOC110515141 LOC106581821 non-coding downstream 138902 24727603 ~ 24765483 (-)
G238316 NA non-coding downstream 184295 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 185706 24717738 ~ 24718558 (-)
G237877 NA non-coding downstream 343688 24560332 ~ 24560576 (-)
G238414 NA non-coding upstream 8785 24928799 ~ 24931448 (-)
G238494 tap1 non-coding upstream 209088 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 229536 25149550 ~ 25149823 (-)
LOC110515384 LOC106582009 non-coding upstream 251312 25171287 ~ 25236536 (-)
G238588 NA non-coding upstream 258622 25178636 ~ 25178846 (-)
G237832 NA other downstream 382720 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 720300 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 1124129 23771511 ~ 23780158 (-)
G237047 NA other downstream 1715233 23157109 ~ 23189031 (-)
LOC110515750 LOC106582146 other upstream 903342 25822812 ~ 25825108 (-)
G240409 NA other upstream 1649087 26569101 ~ 26569522 (-)
G240464 NA other upstream 1754578 26674592 ~ 26675033 (-)

Expression


Co-expression Network