LOC110515238 (LOC106581944)


Basic Information

Item Value
gene id LOC110515238
gene name LOC106581944
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25058594 ~ 25072664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964708.1
CTCCCACTCTATCTCTCGGTGTTTTATGTCTGCGTCACAACAAGTCGGTcgagaaagaggcagggatgATGGCGTCTCTCGCGGGTTGATTCTCGTGCTGCTCTGACAAACACGCCTAATAGCATCAATAGGTGGAGAAACGAGAGCAAAGGCAAGGGAACATGACGAAACGACGTCGCggaggacagacagaccgagGGAAAGACGGACGTACCGACGGTGTCTCACTGACGACTTGACTGACATACGCGCttggcacagacacatacatgcacatcCACTTTGGCACACACGTAGGCTTCACATCCAACCGGCCAGTAATTGAGACGAGAGGAAAACAGAAGAGATAAAATATTTCATGTCAAGCCGGCACAGGAATCGCTGTGACCCCAACGGAGAGGAGTTCGACTTGACAGGATGGGGGGAGTAAGTGAAGGGGATGATGTGTTAGCTCGATGGAGTGATGGACTACTGTACCTCGGTAATGTGAAAagagTAGATGGAGTCAAGCAGTGTTGTCTGGTGAGATTTGAGGACAACTCGGAATTCTGGGTCCTAAGAAAAGACATTCACTCTTTCTCAGTTGGAGTGGAagaggtttgctgtgtctgtgatGCCCCGCCTCTTAAAGAACCTctcatcaattgtcttaaatgtCGTCACGGTTATCATCCTGAGTGCCACACTCCGTCCATTGAGCCGGAAGCTGACAGCAATTCTTGGATATGTCGGCAATGTGTCTTTGCAGTGGCAACCAAGAGAGGGGGAGCCATCAAACGAGGACGGTTTGCCCGGCTCATGCAAATCATGAAACTTCGGCTGCCCTATCAGCTGTCATCTTTAGACTGGGACCCACAGCATCTGACCAACCAGCAGcagtgttactgctactgtgccGGACCTGGAGAGTGGAACCTGAAAATGTTGCAGTGTGGAAGTTGTGGTCAGTGGTTTCATGAAGCTTGCACACAGTGTCTGACCAAGCCGTTGTTATATGGAGACAGGTTTTATGAGTTCCAGTGCTCAGTCTGTGCAAGCGGACCAGAGACAATTCAACGGCTACCCATGAGCTGGGTAGATTTGGCCCATTTGGTGCTCTACCACCTCTCCTTGTGCTGCAAGAGAAAATACTTTGATTTCGACCATGAAATCATGTCGTTTGCCAATGAGAATTGGGACTCTTTGCTTCTCGGCTCGctctctgaCACACCAAGGCAAGATCGCTGCCACAATCTGCTCAACGCTTTGAACTCCAACAAAGACAGGTTTGTCTCTGGTAAAGAGATCAAGAAGAAGAAGTGTCTTTTTGGGCTCCAGGTCCGAGCTCCGCCTCCCCTGACCTCTGATTCGTCTCCCCTCATCACTGACCCGCCCATCAACATCACCCAAAGGAGAAGCCCATTGTCACTGCCCTGCCAGAGGAGAGCGGTGGGGCCAGAGTCACGCAAATCAAAGCGGCGCATCATGGAGACACAGCCTTGTCCGCCCCCGGTCCCAGCCACCCCAATAGATCTTGTGCCATGTTGCCATGGCTACGTAGGTGGAACTAACCTCTACAACTCCAGGAAGTCGGAGGAGGAGCTGAATTTGGGCTCTCCACCTAAGCGGATGTTTGCCCTGTATCACCCCACCTATAACGGCGCCCCAGCCATCTCCAGAACCCTGCATCACTATAGtgcGGAAGATCCTTGTCGAGTGCCGCCCCCCTgcctccccttctccctgtcatcctcccaccatcaccaccaccaccatcacaaccaccaccaccaccagcagcagcaCCACCAGCACCAGCCTGGCCAGAAGTTGGatccctgcccctccctcctgCTGCGTGACGTCCCTTCCTATCCGGGCAGCGTGGGGGGAGGGGGCGGGGGGGATGGGTCAGCTGTCAGGGGCTGGGGGGGTGGGGACGGGGTGAGGATTTTGGCGAGGCGAGTAACGCCAGACGGGAAGGtccagtacctcgtggagtgggggAACGTGAGTGTGTactga

Function

NR:

description
PHD finger protein 1-like isoform X3

GO: NA

KEGG:

id description
K11467 PHF1, PCL1; PHD finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964708.1 True 2004 mRNA 0.54 15 25058594 25072664

Neighbor

gene id symbol gene type direction distance location
LOC110515208 LOC106581894 coding downstream 5624 24936516 ~ 25052970 (-)
LOC110515194 LOC106581883 coding downstream 138580 24904264 ~ 24920014 (-)
LOC110515183 LOC106581871 coding downstream 164681 24884628 ~ 24893913 (-)
LOC118944507 NA coding downstream 213881 24843450 ~ 24844713 (-)
LOC110515174 NA coding downstream 233458 24819843 ~ 24825136 (-)
LOC110515290 LOC106581956 coding upstream 28729 25101393 ~ 25106636 (-)
LOC110515302 LOC106581964 coding upstream 35158 25107822 ~ 25111116 (-)
notchl LOC106581966 coding upstream 46519 25119183 ~ 25125442 (-)
LOC110515384 LOC106582009 coding upstream 98623 25171287 ~ 25236536 (-)
LOC110515443 LOC106605270 coding upstream 393187 25465851 ~ 25521829 (-)
G238414 NA non-coding downstream 127146 24928799 ~ 24931448 (-)
LOC110515154 LOC106605289 non-coding downstream 289263 24767049 ~ 24799511 (-)
LOC110515141 LOC106581821 non-coding downstream 293232 24727603 ~ 24765483 (-)
G238316 NA non-coding downstream 338625 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 340036 24717738 ~ 24718558 (-)
G238494 tap1 non-coding upstream 56438 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 76886 25149550 ~ 25149823 (-)
G238588 NA non-coding upstream 105972 25178636 ~ 25178846 (-)
G238593 NA non-coding upstream 116395 25189059 ~ 25189309 (-)
G237832 NA other downstream 537050 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 874630 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 1278459 23771511 ~ 23780158 (-)
LOC110515750 LOC106582146 other upstream 750692 25822812 ~ 25825108 (-)
G240409 NA other upstream 1496437 26569101 ~ 26569522 (-)
G240464 NA other upstream 1601928 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1998391 27070914 ~ 27097259 (-)

Expression


Co-expression Network