LOC110515290 (LOC106581956)


Basic Information

Item Value
gene id LOC110515290
gene name LOC106581956
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25101393 ~ 25106636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594242.2
CGTGACCAAAAGCCCGCCCCGTGACATCATACTTCAAAACAAGGATGCATCTCAAATAAAGAAATGGAATCGTTCGCCACAATCGAAGATCACGTGGATACGGAAAAAGCTGTAGAATCAGCGCCCTTGTCAAATTCTTATCTACTCAAAGATGTTGTCACTTGTTGTCCTGATGATCCTGTTTCAACCAGAAGAGGGAGGCTCCTCACCTATCTCCTGTTACAATGATCAAGGGGAAGCTGTTGACTGGTTCTATCTCTACAAACTCCCCCATGTTGATCGtgaatttcccaatgatggacaGAGTTATCTACTGATGGACAAAGGGAGCGAGGGATGGACGGATGGAAATGTGTTGGTAAATGACAGCACTGGAGCCCTGGGGAGGACAGTGGGCCAGCTGTATGAGCAGGGGAAGAATGGTGACATTGCATACATCCTGTACAATGACCAGAGACCACCCGAGGAGGGAGAAAAAGGATTTGATTTCCTTAGTAGCCGAGGTGGCCACACCAAAGgtGTTGTCTTATTGGACAAGACACAGGGCTACTGGTTGGTCCACAGCACCCCTAATTTCCCCCCTGTAAAGGAAATGGGGCAATATTCCTACCCAGGTAGTGGTGTACAGAACGGACAGAACTTCATCTGTGTGACCTACCCACTGGAGCGCTTTCAGGCCATTGGAGAGCAGTTGCAGATCAACCAGCCCAATGTGTATGACTGCGGTGTCCCTGCTTCCTTGGCCTCTCTGGTGCCCGCACTGGCTGACGTCTGTAACAACAGCCAAGGTCAGATGGCCTATAGCAGCTTACTGCACACCCAACCTGCATCCAATCGCAGCGTGTCTCTCACCTCATTGGGTGGAACCGAGTTCATCAGCTTTGCCAAGGGGAGAGCATTCAATAATGATCTGTACCACTCCTGGGtggctccctccctccagtcaGACCTCCTAGTCCAGTTCTGGATCCGCTCCCCTGGCATCCTGCCCTCTGACTGCTCCCTGGGCTGGAAGGTCCTGGACATCCAGCTTATCTCCCCAGGCGGGAGGATCACCTTCAAGGCCTCCAACGACCACTCCAAGTGGGCCGTGAGTACCACCGGGGGTGGGTTGGATGGAGCTgctggctgggtgtgtgtggGCGACATCAACCGGAACGAggctgaggagaagagagggggcgGGACGGTGTGTCTGCAGGACGCCACGGTGTGGAAGGCCTATCGGACAGCGGCGCTGGAGTGTGAGATGTGCGGGGGAGGGACTAGCGGGTGTGATGTGGACGTAGAGGATGCAAGGCACTACCAGGGAGATATGAATCAGTAAGCATCAGTGTAAAGTTACTAGTATGCACACAGTTCACTGAGCAGGTAGGTGTATTAGTATTATTGAGCTCCATGAACAAGGTACCCCATAGAATGTTGATTAATAAGGTACCAGAATCTAATTcactttttttatggcagttttggagtgTTTCATAAATTGCCATGAATAGAAACATACTTGAAAGGGAAGTGGCACTCCTGTAATCATTAAACAATGATCATTTTGATGCACGCTATGTAGTTCTATAAGTTGCTAATGACTGTAGGCAATGTTGATTGTGATCTCAggtatgtttttagacattttatgTGTCTGTTTTCAACCTTTTTTATGTGACaaatgataaaaataaaaaaaagattgt

Function

NR:

description
deoxyribonuclease-2-alpha-like

GO: NA

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594242.2 True 1694 mRNA 0.49 7 25101393 25106636

Neighbor

gene id symbol gene type direction distance location
LOC110515238 LOC106581944 coding downstream 28729 25058594 ~ 25072664 (-)
LOC110515208 LOC106581894 coding downstream 48423 24936516 ~ 25052970 (-)
LOC110515194 LOC106581883 coding downstream 181379 24904264 ~ 24920014 (-)
LOC110515183 LOC106581871 coding downstream 207480 24884628 ~ 24893913 (-)
LOC118944507 NA coding downstream 256680 24843450 ~ 24844713 (-)
LOC110515302 LOC106581964 coding upstream 1186 25107822 ~ 25111116 (-)
notchl LOC106581966 coding upstream 12547 25119183 ~ 25125442 (-)
LOC110515384 LOC106582009 coding upstream 64651 25171287 ~ 25236536 (-)
LOC110515443 LOC106605270 coding upstream 359215 25465851 ~ 25521829 (-)
LOC110515528 LOC106582056 coding upstream 461403 25568039 ~ 25575807 (-)
G238414 NA non-coding downstream 169945 24928799 ~ 24931448 (-)
LOC110515154 LOC106605289 non-coding downstream 332062 24767049 ~ 24799511 (-)
LOC110515141 LOC106581821 non-coding downstream 336031 24727603 ~ 24765483 (-)
G238316 NA non-coding downstream 381424 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 382835 24717738 ~ 24718558 (-)
G238494 tap1 non-coding upstream 22466 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 42914 25149550 ~ 25149823 (-)
G238588 NA non-coding upstream 72000 25178636 ~ 25178846 (-)
G238593 NA non-coding upstream 82423 25189059 ~ 25189309 (-)
G237832 NA other downstream 579849 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 917429 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 1321258 23771511 ~ 23780158 (-)
LOC110515750 LOC106582146 other upstream 716720 25822812 ~ 25825108 (-)
G240409 NA other upstream 1462465 26569101 ~ 26569522 (-)
G240464 NA other upstream 1567956 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1964419 27070914 ~ 27097259 (-)

Expression


Co-expression Network