LOC110515302 (LOC106581964)


Basic Information

Item Value
gene id LOC110515302
gene name LOC106581964
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25107822 ~ 25111116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594249.2
gggttggggtaagaggaacaggaagagactAGCGAGCGAGAGCTCGTCACTGTGATATGTGAAGCATAACTGATTAGTTGTCATGAAGAAAACTGCCATGTGAATCAGTGATGCCATACCTAATCCATGTGGACAGAAGAAGATGATGTTTATCGGAAACTGAACTCCAGGAAAACACAGGTTTACACTGAGACAAATGGATGTTGTCATGGAATACCCAAAGGTCAAAGTTGAAACAGCTGAAGAGGAGCACTTGGAGGATCTAATCATTATTAAGGAGGGGGATgttgagggagggatagagacaaTAACAGGCAAGAGCAACGATGAAGACTCCAGTGCGGAAGAGGATGCCACTGCCAGACATGGACAGATTGGAAAAGCCAACACTGAAAGCGGAGATGGCGACAAAAGAAAAAAGGATAACCATATAAATCAAGCAAAAggagagactgggacagaggaggGGGTTGAGCACATTAAAGGGATGGATAAATTAGTAATGGATGGCCCGAAAATACATGGCAAGAAAGAAGGGATGGCGATGGTGGATAAAacagaaaaatacaaaacaacagaacaaGATTTGGAGACGGACAAACCATCACAAGGATTACAAGTTGACACAAATAGACATCTTCCCTTTGACCAGTTGCCCAAAGATACGCTGAGCCCAGAGCATGCCCAAAAGCAGGCTCAACGGTTAACCCCTTACTTCCCAGACGCTCTGTATGACCTGGTCTTTACTCTGCAAGAAGGAAGACGACTCAATGACCAGCGGTGCTCGTtcagagggaggagaagatgcCATTCTGAACCCAACACCTACATTCCGGCCCACAGAGCCCACAGAGTGCATTTTTCCTCAATGACCTCGCTGCAGAAAGATGAGTTCTTTGACTTGGTGGCTACTTCCCAAGGCCGTCGGCTTGACGACCAGCGGGTGGAACTACATGACACCCCACCCCTTAAGCCGAAAGCCAATAAGAAGAGGAGCAGCGTAAAAGATACAAAACCTAAAAAGTCTGCTCCAATTGCAGTGCAGAACGAGGACTTGTACAATATGATTCTCATCTCGCAAGCTCAGGGTAGGCTGGAGGAGCAGCGCAGTGTGGCCCCAGGGCCTATGGATGATGAGGACTTCTTTTCCTTACTGCTGAGTGTCCAGGGAGGACGCATGGAGGACCAGAGGACTGAGTTGCCTGGGATTCTGGGAACCTGAGAGATACACATGCTGTAGAGAAGGGCTCAAATGGCTCAGAGTATGTGGTGTAGCCCTATAGAGCAATGGCTTTTGCTTCTTATTCACCTGGCCAGACCAGGCATGACCATTTTGTTCTGTTGTGGTCAGAGTTGACAGTATCATCTGTATCGATACCTGCATCAGTCATTTAATTAAAACAATTGTATGTGAATAATAGAGTCGTCATTTCAGTTGCATAATGCTGTAGAGACTAATTCCAATGTTTGTTGTATGATATTAAGCTTACAGAGTGGGCTGATTTGTCTGTTGACTGCACATTCATTTGGATGTTATTCAAAATGCCCCTACGCTTTGGGGTGCTTTAAATGTGTTTATTGCAATATGAGGAAATGAGTTTTGCTCACCACAGCAGTGAACGAGTATGAATGAGAGTGTTTGTGTTTCCATCTTATATTTGGATTCAGCTCCTCACGAGAATAAAATAAGCGTTAAAT

Function

NR:

description
uncharacterized protein LOC110515302

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594249.2 True 1698 mRNA 0.45 5 25107822 25111116

Neighbor

gene id symbol gene type direction distance location
LOC110515290 LOC106581956 coding downstream 1186 25101393 ~ 25106636 (-)
LOC110515238 LOC106581944 coding downstream 35158 25058594 ~ 25072664 (-)
LOC110515208 LOC106581894 coding downstream 54852 24936516 ~ 25052970 (-)
LOC110515194 LOC106581883 coding downstream 187808 24904264 ~ 24920014 (-)
LOC110515183 LOC106581871 coding downstream 213909 24884628 ~ 24893913 (-)
notchl LOC106581966 coding upstream 8067 25119183 ~ 25125442 (-)
LOC110515384 LOC106582009 coding upstream 60171 25171287 ~ 25236536 (-)
LOC110515443 LOC106605270 coding upstream 354735 25465851 ~ 25521829 (-)
LOC110515528 LOC106582056 coding upstream 456923 25568039 ~ 25575807 (-)
LOC110503974 NA coding upstream 472825 25583941 ~ 25589424 (-)
G238414 NA non-coding downstream 176374 24928799 ~ 24931448 (-)
LOC110515154 LOC106605289 non-coding downstream 338491 24767049 ~ 24799511 (-)
LOC110515141 LOC106581821 non-coding downstream 342460 24727603 ~ 24765483 (-)
G238316 NA non-coding downstream 387853 24719736 ~ 24719969 (-)
G238315 LOC106581815 non-coding downstream 389264 24717738 ~ 24718558 (-)
G238494 tap1 non-coding upstream 17986 25129102 ~ 25129653 (-)
G238509 NA non-coding upstream 38434 25149550 ~ 25149823 (-)
G238588 NA non-coding upstream 67520 25178636 ~ 25178846 (-)
G238593 NA non-coding upstream 77943 25189059 ~ 25189309 (-)
G237832 NA other downstream 586278 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 923858 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 1327687 23771511 ~ 23780158 (-)
LOC110515750 LOC106582146 other upstream 712240 25822812 ~ 25825108 (-)
G240409 NA other upstream 1457985 26569101 ~ 26569522 (-)
G240464 NA other upstream 1563476 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1959939 27070914 ~ 27097259 (-)

Expression


Co-expression Network