LOC110515353 (pbx2)


Basic Information

Item Value
gene id LOC110515353
gene name pbx2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25112639 ~ 25119442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973070.1
GCTCTAGTGTTTGAGTTTTGAAGGGTGTGTGACTGTGATTACTCGTCCGCGCCACTGTGTGCCGCTCAGGATGTTGCAGCAGCAGCCTCTCACTGGCAACGGGCCCTCTAACGGCCGGGGCCTTGGCCTGAGCTCTCACCCCGGTATGCACCCTCTAAACTCGGTTCATCCATCTTCCCACCACCGCTCCGATGGAGACACGGGCCACGAAGGCGCAGAAAATGGACATGAAAGCCGCAGAGACATTGGTGACATATTGCAACAAATTATGACCATCACCGACCAAAGTTTGGACGAAGCACAAGCAAAAAAACACGCATTGAATTGCCATCGAATGAAACCAGCTTTGTTCAGCGTCTTATGCGAGATCAAAGAGAAAACGGGCCTATCAATGCGAAATGCTCAGGAGGAAGAATCACAGGACCCACAGCTGGTGCGATTGGACAACATGCTGCTGGCGGAGGGTGTGGCTGGGCCGGAGAAAGGTGGCGGGGCGGCAGCGGCGGTGTCCGCAGCCACCAGCTCTGGAGGCATGTCTCCAGACAGCTCACTGGAACACTCAGACTACAAAAGCAAGTTGAGCCAGATTCGCAACATCTATCACACTGAGATGGAGAAATATGACCAGGCCTGTAGTGAGTTCACTACCCACGTGATGAACCTGCTGAGGGAGCAGTCACGTACACGACCCGTGTCACCGCGGGAGATTGAACGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGACACAACTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGAGGTCCCGCTTCCTCGACGCCAGGCGTAAGAGACGTAACTTCAGCAAGCAGGCGACGGAAGTCCTGAACGAGTATTTCTACTCCCATCTCGCCAACCCTTACCCCAGTGAAGAGGCCAAAGAAGAACTCGCCAAACAGTGTAGCATCACTGTCTCTCAGGTGTGCAACTGGTTTGGCAACAAGAGAATCCGCTACAAGAAGAACATCGGGAAGTTCCAAGAGGAGGCCAACATCTATGCCATGAAGACGGCCATCGTGGCGACACAGAACGAGGACTCTCCACACACGCCCAACTCAACAGGATCGGGGGGCTTCTCACTCACTGGACCAGACCTTTTCCTGGGTGTTCCACCAATGAATGGAGAGCAGCCTGTCTACATGGGAGCACAAACTAATGGGAACTGGCAAGGGCAAAACACGCCCCCCTCTGCCACTTCCCCGGGAAACGACCACTCGGGGGACTCTGACTGATGGCCCCACCCCCTTTGGGTCGATGACATAGATGGAAAGATTGACAACGAAGAAAGAATGATATCACCCTTACTTGGCTGCAGTTTTTTGTATGTCCTTTCTGTTTCTTACTGTCCAATGATACTGTTCATTATGTTTGTATGAGCTGAATGTGTGatttttgtgtgagtgtgtgtgatgttttgtaTTGGGATCGTGGGTTTTTGTTTTCCACAACTTTATATGTTACTGTGGTATGTAGGCAGGGAGGCTTGGGAAATTGCGTTACCATTGTTTTATTAGGCTATATTATTAATGCTGTTATTACAAATATTTTAGGATTTTCGTTTAAAGCTCAGATATAGTTGCATTTAGAGGATGTGGGGGCAATATAGAAAATCCAAAGATTTAGTGTGTTTGTTTTCTCTTTTCTACTGGgcttgtttgtctgtgtgtctatatcatgaatgaagtgtgtgtgcTGGTTATATTAACAGTTTGAATGAGTATATCAACAGTGCTGTCATTCTGTACAGTGAGTGAAAAACACCTGTATTCTCTACCTCTTTTACAATAAAGTCTCTGTATTCACA
>XM_036973080.1
ACTGTGATTACTCGTCCGCGCCACTGTGTGCCGCTCAGGATGTTGCAGCAGCAGCCTCTCACTGGCAACGGGCCCTCTAACGGCCGGGGCCTTGGCCTGAGCTCTCACCCCGGTATGCACCCTCTAAACTCGGTTCATCCATCTTCCCACCACCGCTCCGATGGAGACACGGGCCACGAAGGCGCAGAAAATGGACATGAAAGCCGCAGAGACATTGGTGACATATTGCAACAAATTATGACCATCACCGACCAAAGTTTGGACGAAGCACAAGCAAAGTTAAAAACACGCATTGAATTGCCATCGAATGAAACCAGCTTTGTTCAGCGTCTTATGCGAGATCAAAGAGAAAACGGGCCTATCAATGCGAAATGCTCAGGAGGAAGAATCACAGGACCCACAGCTGGTGCGATTGGACAACATGCTGCTGGCGGAGGGTGTGGCTGGGCCGGAGAAAGGTGGCGGGGCGGCAGCGGCGGTGTCCGCAGCCACCAGCTCTGGAGGCATGTCTCCAGACAGCTCACTGGAACACTCAGACTACAAAAGCAAGTTGAGCCAGATTCGCAACATCTATCACACTGAGATGGAGAAATATGACCAGGCCTGTAGTGAGTTCACTACCCACGTGATGAACCTGCTGAGGGAGCAGTCACGTACACGACCCGTGTCACCGCGGGAGATTGAACGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGACACAACTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGAGGTCCCGCTTCCTCGACGCCAGGCGTAAGAGACGTAACTTCAGCAAGCAGGCGACGGAAGTCCTGAACGAGTATTTCTACTCCCATCTCGCCAACCCTTACCCCAGTGAAGAGGCCAAAGAAGAACTCGCCAAACAGTGTAGCATCACTGTCTCTCAGGTGTGCAACTGGTTTGGCAACAAGAGAATCCGCTACAAGAAGAACATCGGGAAGTTCCAAGAGGAGGCCAACATCTATGCCATGAAGACGGCCATCGTGGCGACACAGAACGAGGACTCTCCACACACGCCCAACTCAACAGGATCGGGGGGCTTCTCACTCACTGGACCAGACCTTTTCCTGGGTGTTCCACCAATGAATGGAGAGCAGCCTGTCTACATGGGAGCACAAACTAATGGGAACTGGCAAGGGCAAAACACGCCCCCCTCTGCCACTTCCCCGGGAAACGACCACTCGGGGGACTCTGACTGATGGCCCCACCCCCTTTGGGTCGATGACATAGATGGAAAGATTGACAACGAAGAAAGAATGATATCACCCTTACTTGGCTGCAGTTTTTTGTATGTCCTTTCTGTTTCTTACTGTCCAATGATACTGTTCATTATGTTTGTATGAGCTGAATGTGTGatttttgtgtgagtgtgtgtgatgttttgtaTTGGGATCGTGGGTTTTTGTTTTCCACAACTTTATATGTTACTGTGGTATGTAGGCAGGGAGGCTTGGGAAATTGCGTTACCATTGTTTTATTAGGCTATATTATTAATGCTGTTATTACAAATATTTTAGGATTTTCGTTTAAAGCTCAGATATAGTTGCATTTAGAGGATGTGGGGGCAATATAGAAAATCCAAAGATTTAGTGTGTTTGTTTTCTCTTTTCTACTGGgcttgtttgtctgtgtgtctatatcatgaatgaagtgtgtgtgcTGGTTATATTAACAGTTTGAATGAGTATATCAACAGTGCTGTCATTCTGTACAGTGAGTGAAAAACACCTGTATTCTCTACCTCTTTTACAATAAAGTCTCTGTATTCACA

Function

symbol description
pbx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development. Predicted to be located in nucleus. Orthologous to human PBX2 (PBX homeobox 2).

NR:

description
pre-B-cell leukemia transcription factor 1-like

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030901 midbrain development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973070.1 False 1839 mRNA 0.49 8 25112639 25119442
XM_036973080.1 True 1812 mRNA 0.49 8 25112670 25119442

Neighbor

gene id symbol gene type direction distance location
LOC110515267 LOC106605278 coding upstream 11421 25076339 ~ 25101218 (+)
LOC118948035 LOC106605281 coding upstream 136155 24974626 ~ 24976484 (+)
LOC110503966 LOC106581868 coding upstream 236455 24847527 ~ 24876184 (+)
LOC110515164 LOC106581855 coding upstream 293395 24817575 ~ 24819244 (+)
LOC110515127 LOC106581815 coding upstream 394010 24711483 ~ 24718629 (+)
LOC110505167 tap1 coding downstream 7737 25127179 ~ 25135494 (+)
LOC100136302 LOC106581989 coding downstream 18314 25137756 ~ 25147306 (+)
LOC110515374 NA coding downstream 36934 25156376 ~ 25161150 (+)
vmo1b vmo1 coding downstream 42798 25162240 ~ 25165365 (+)
LOC110515419 LOC106582023 coding downstream 143431 25262873 ~ 25270428 (+)
G238238 NA non-coding upstream 2047 25109122 ~ 25110592 (+)
G238129 NA non-coding upstream 159164 24937604 ~ 24953475 (+)
G238029 NA non-coding upstream 207122 24904299 ~ 24905517 (+)
G238033 NA non-coding upstream 227178 24854769 ~ 24885461 (+)
G238028 NA non-coding upstream 303759 24808437 ~ 24808880 (+)
G238196 LOC106581966 non-coding downstream 904 25120346 ~ 25120658 (+)
G238194 NA non-coding downstream 1430 25120872 ~ 25121188 (+)
G238197 NA non-coding downstream 3210 25122652 ~ 25122955 (+)
G238198 NA non-coding downstream 3691 25123133 ~ 25123346 (+)
G238195 NA non-coding downstream 4024 25123466 ~ 25123783 (+)
G238050 NA other upstream 336694 24775279 ~ 24775945 (+)
G238047 NA other upstream 346276 24765666 ~ 24766363 (+)
G238034 NA other upstream 362256 24749405 ~ 24750383 (+)
G236753 NA other upstream 1056972 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 1183552 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 75845 25195287 ~ 25199234 (+)
G239026 NA other downstream 421327 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1094200 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1207966 26327408 ~ 26328331 (+)
G240244 NA other downstream 1931744 27051186 ~ 27051954 (+)

Expression


Co-expression Network