LOC110505167 (tap1)


Basic Information

Item Value
gene id LOC110505167
gene name tap1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25127179 ~ 25135494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110505167
ACCTCATTATCTATCTGTCCCAAACTCCTGTTCTAAAGCCTGTTCGGAATGCCGAAAATGAACTTCTCTCCACTGCTCTTCCTgtgcatggatgtgtgtgtggtgcagaCAGTCCGCTTGGCccaactctcccctctcctcctcccccatcccctcATCACCTTGTGGGGTGGAAGCCTGCTCCGTGCCGGCCTCCACCTCTTTCTCACCTTCACGTTCCCTGGAAGTCCCCTATGGATGAGCAGCTTCGAGGGGCTCCAGAGCATGGGGGTCCTCTGCTTCCATTGCTCTTCcattatatattaatatatataccCTTTTTGTTTTAAAAATGGATAAACCAAACAAACTAAAATCACTTGTTTTTCAGCTACTTTAGGGCTACTGCGTAACAGTCGTAGCATGGTTGTACTGGACACGCTACGTCCCTTCTCTTCTTACCAAGCCCACCAAGGAACCACAGAAGAAGACTGGGgcatctctagagaaactgatGGGATACATGAAGCCTTATATCATACGCTTTGGAGCTGTGCTGAGTCTTGTCGTCATCTCTTCCCTTGGTGAGATGGCTATTCCCCACTACACCGGCCGAATGACTGACTGGATTATGAATGAAGACGAGTCTGAAGCCTTCACTTACGCCATCACGGTCATGTCTCTGATTACAGTCATGAGtgctgtgtgtgagtttgtgtgttaCCTCATCTACAACATCACCATGAGTCGCATACACACCTCCCTCCAGCGCCTAGGCTTCCAGTCGGTGCTGAAGCAGGAGATCCCTTTCTTTGGCAAAGCTCAGACAGGTGACCTTGTGTCACGCATCACCACGGACACCAACGACATGAGTGAGTCTCTGAGTGAGAAGTTGAGTCTGCTGATGTGGTACTTCATGCGGGTCACTTTCCACTTCATCTTCATGCTCACCTCTCCTGGAAGCTGTCACTCTTCACCGCTATGGGGCTTCCTATCATCTGGGTCATACCAAAGATACCCGGCAAGTGGTACCAGAAACTCGGTGCGAAGGTTCAAAAGTCACTAGCCCAGGCCAATGACGTTGCCACGGAGACCTTCTCCTCTATGAAGACAGTACGCAGCTTTGCCAATGAGGAGGGCGAGACGGAGCGCTACAGGAAGAGGCTGGAGAAGACCTACTCTCTGAATAAAGAGGAAGCAGCAGCCTACGCAGCCTCAATCTGGACCAATAGCaTGTCAAGCCTGTTCCTGAAGGTCAGTATCCTGTACTATGGCGGCAGTCTGGTGACAGGGGGGGCCGTCAGCAGTGGGGACCTGGTGGCCTTTGTGCTCTACGAGCTCCAGTTCTCCTCTGCTGTGGAGACCGTGATGTCGTGTTACCCAAGTGTGATGAGGGCAATCGGTGGCTCTGAGAAGATATTTGAGTATGTGGACAGCCCCATGTTCCTCCAGAAGGCACCTTTTCCCCACAGAAACTTATGGACATATGTTCAGTTCAAGAATGTCATATTTACCTACTCTACCAGGGAAGATACACCTGTGCTCaagGGCCTGTCTCTGGAGCTGAGACCTGGGCAGATCACTGCCCTTGTGGGGGCTTCTGGAGCAGGGAAAAGCACCTGTGTGAGCCTGCTGGAGAGGTTCTACCTGCCCCAGGAAGGAGAGATCTTATTGGATGGACAGCCACTGAACAGCTACAAGAACCAGTACCTGCACGACCAGATCAGTGTGGTGAGTCAGGAGCCGGTGTTGTTTGCTCGTTCTGTCAAGGAGAACATCAAATaccctgcctATGATGCCACTGATGAGGAGATGTACCGGGCTGCTGAGCTGGACAACGCCCACAAGTTCATCTCTGACCTGCCCAATGGCTATGATACAGATGCCGGGGAGAAGGGAGGCCAGGTTTCAGGAGGGCAGAAGCAACGCATTGCCATCGCCAGAGCTCTGATCAGACAGCCTCGGATTCTAGAGCTGGACGATGTCACCAGTAACTTGGACACAGAGAGCAAGCATTTGGTCCACCAAGCTCTGCTCAACGATTCATACCCCTGCTCAGTGCTGCTGATTGCTCATAAGCTGAGCACTGTGGAGAAGGTCAATCACATTGTCATTCTCGAGGAGGGAAAGGTGCTAGAGGAGGGGGGCCATGTTGAGCTGCTGGAGAAAGGTGGAACCTATGCTGATCTGGTGAACAGGCAGAACACTTTCTATTTGCACTATAGTGTAACTAAAGTATTCTTTCTGCCCCAAATgccttttgtatttattttgactTTTATTTTTGTTAAATTGTTCTCCCACATTTGTGTTctaactatatacagtggggcaaaaaagtatttagtcaaccaccaattgtgcaagttctcccacttaaaaaATTGCAGCCGGAAGCAACAAGAAGCGCTGtga
>TU272230
AGGGCCTGTCTCTGGAGCTGAGACCTGGGCAGATCACTGCCCTTGTGGGGGCTTCTGGAGCAGGGAAAAGCACCTGTGTGAGCCTGCTGGAGAGGTTCTACCTGCCCCAGGAAGGAGAGATCTTATTGGATGGACAGCCACTGAACAGCTACAAGAACCAGTACCTGCACGACCAGATCAGTGTGGTGAGTCAGGAGCCGGTGTTGTTTGCTCGTTCTGTCAAGGAGAACATCAAATaccctgcctgtttggccctgtccgggggtatcatcggatggggccacagtatctcctgacccctcctgtctcagtctccagtatttatgctgcagtagtttatg

Function

symbol description
tap1 Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member).

NR:

description
antigen peptide transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110505167 False 2394 mRNA 0.55 12 25127179 25135494
TU272230 True 341 lncRNA 0.44 2 25130591 25131094

Neighbor

gene id symbol gene type direction distance location
LOC110515353 pbx2 coding upstream 7737 25112639 ~ 25119442 (+)
LOC110515267 LOC106605278 coding upstream 25961 25076339 ~ 25101218 (+)
LOC118948035 LOC106605281 coding upstream 150695 24974626 ~ 24976484 (+)
LOC110503966 LOC106581868 coding upstream 250995 24847527 ~ 24876184 (+)
LOC110515164 LOC106581855 coding upstream 307935 24817575 ~ 24819244 (+)
LOC100136302 LOC106581989 coding downstream 2262 25137756 ~ 25147306 (+)
LOC110515374 NA coding downstream 20882 25156376 ~ 25161150 (+)
vmo1b vmo1 coding downstream 26746 25162240 ~ 25165365 (+)
LOC110515419 LOC106582023 coding downstream 127379 25262873 ~ 25270428 (+)
LOC110515430 LOC106582018 coding downstream 139909 25275403 ~ 25335823 (+)
G238243 NA non-coding upstream 502 25126361 ~ 25126677 (+)
G238199 NA non-coding upstream 1782 25125077 ~ 25125397 (+)
G238195 NA non-coding upstream 3396 25123466 ~ 25123783 (+)
G238198 NA non-coding upstream 3833 25123133 ~ 25123346 (+)
G238197 NA non-coding upstream 4224 25122652 ~ 25122955 (+)
G238506 NA non-coding downstream 12001 25147495 ~ 25147745 (+)
G238519 NA non-coding downstream 39296 25174790 ~ 25175404 (+)
G238521 NA non-coding downstream 40840 25176334 ~ 25176607 (+)
G238524 NA non-coding downstream 43290 25178784 ~ 25179166 (+)
G238525 NA non-coding downstream 44093 25179587 ~ 25179819 (+)
G238050 NA other upstream 351234 24775279 ~ 24775945 (+)
G238047 NA other upstream 360816 24765666 ~ 24766363 (+)
G238034 NA other upstream 376796 24749405 ~ 24750383 (+)
G236753 NA other upstream 1071512 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 1198092 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 59793 25195287 ~ 25199234 (+)
G239026 NA other downstream 405275 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1078148 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1191914 26327408 ~ 26328331 (+)
G240244 NA other downstream 1915692 27051186 ~ 27051954 (+)
G238246 NA non-coding downstream 1946 25133040 ~ 25133241 (+)

Expression


Co-expression Network