LOC110515374


Basic Information

Item Value
gene id LOC110515374
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25156376 ~ 25161150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005042063.1
gtggaggtcctgggttggcgtggttacccgtggtctgcggttgtgaggccggttggacgtacagtTTAACTAACAATAAAGGGCAGACACTGTAATGATCATGACtccacagtaggtggcagcagtCAGACGTGGGCTATGTCAGGGCGATGCTGAtcattcagatagaaatgtattgtgtagaatGCAGAATAGGGAGTCATGTCCCAGCGCTATTTATTGAGTTTCTATCTGCAAAGTTCTGAATGTTTCACCTCTTTGATACACCCTAGTTGTGTGTAAGGTGTGCCATGCTCAGAATGCCTAATGTTCTCTATGTAATAACCATAGATATGGTAATAACGTCAGTGTCATCCAGATAAAATATTCGATTGGCTGATGATATTGAGGAAGTCACCTGACACCTTCAGCAGCACTGTTTGGAGTACTACACAATAATCAGAACATTACAGATAAGCCTTACTGGACAAGTGTACTTAGGATGGGGTGCAGAGTGTTCCTGGCTTTTATACTGGGTGTTTGTCTACTGTCACACTGCCAAAGCAAACATTTGCTGCGGTTTTTGACCTTCTGCCAAAAAAACGTCACTAGCGACGAAGAGTATGACGTGGAGTTTGATGGAGATGAGCTCTTCTACCCAGCAGTGGACCCCTGACCCAGGACTGCCTCACGACGTGTACGTGTCCCTCGGAACCTGCCAGTGCAACGTCACCCGTTGCATTGTGGGAGAAAAGAGCCCGCCAGAGGCAATAGGTGAGAGAACGAAGGAGTGCCCAAATTAGAATGGGTGACTGGATGCACCATGGCTCTCTGCTGGGTCTATTGGGTGGCTGGACTTTCTGCCATTCAGACCCGGGCAACACCAGCAGGTGGGTAGCAGTTCCAGGGGATACTTGACTGTGAATATGATGACACCACTGATAATATGATCTACTTTTGTGAAAAACATATTCAACCAAAAATTGACCACCATCTATGACTCCAGGGTTCAGAAGTATGTGGGTTTTGGGGAGTTTGGCATACGCAATGCAGATCACTACAACAGCCAAGCTTGGGAAATGGCTATAAGGAAAGCAGAAGTGGAGACTATTTGCCGATACAGTGCAAGATACTTCAAACTGAGCACTTTGGAAAGAATAGGTCAACTGCATCATGAACATCATAACCAGTCCCAGGACATTTGACCCAagaacctggttgcctctgccaggaggctgacacttggccacaagtggatcttccagcaaggcaataacccccaagcacacatcacaATCCAccaagaaatggttaattgactacaaaa
>XR_005042061.1
gtcctgggttggcgtggttacccgtggtctgcggttgtgaggccggttggacgtacagtTTAACTAACAATAAAGGGCAGACACTGTAATGATCATGACtccacagtaggtggcagcagtCAGACGTGGGCTATGTCAGGGCGATGCTGAtcattcagatagaaatgtattgtgtagaatGCAGAATAGGGAGTCATGTCCCAGCGCTATTTATTGAGTTTCTATCTGCAAAGTTCTGAATGTTTCACCTCTTTGATACACCCTAGTTGTGTGTAAGGTGTGCCATGCTCAGAATGCCTAATGTTCTCTATGTAATAACCATAGATATGGTAATAACGTCAGTGTCATCCAGATAAAATATTCGATTGGCTGATGATATTGAGGAAGTCACCTGACACCTTCAGCAGCACTGTTTGGAGTACTACACAATAATCAGAACATTACAGATAAGCCTTACTGGACAAGTGTACTTAGGATGGGGTGCAGAGTGTTCCTGGCTTTTATACTGGGTGTTTGTCTACTGTCACACTGCCAAAGCAAACATTTGCTGCGGTTTTTGACCTTCTGCCAAAAAAACGTCACTAGCGACGAAGAGTATGACGTGGAGTTTGATGGAGATGAGCTCTTCTACCCAGCAGTGGACCCCTGACCCAGGACTGCCTCACGACGTGTACGTGTCCCTCGGAACCTGCCAGTGCAACGTCACCCGTTGCATTGTGGGAGAAAAGAGCCCGCCAGAGGCAATAGGTGGGTAGCAGTTCCAGGGGATACTTGACTGTGAATATGATGACACCACTGATAATATGATCTACTTTTGTGAAAAACATATTCAACCAAAAATTGACCACCATCTATGACTCCAGGGTTCAGAAGTATGTGGGTTTTGGGGAGTTTGGCATACGCAATGCAGATCACTACAACAGCCAAGCTTGGGAAATGGCTATAAGGAAAGCAGAAGTGGAGACTATTTGCCGATACAGTGCAAGATACTTCAAACTGAGCACTTTGGAAAGAATAGGTCAACTGCATCATGAACATCATAACCAGTCCCAGGACATTTGACCCAagaacctggttgcctctgccaggaggctgacacttggccacaagtggatcttccagcaaggcaataacccccaagcacacatcacaATCCAccaagaaatggttaattgactacaaaa
>XM_036973108.1
attttttattttttttacttacaagccctaaccaacagtgcaatttttaagaAAGCATTCCAccgtaaggtctacctgttgtattcgacacactgacaaataaactttgatttgatccgCACTCTGGAGTGCACAAAACAATGGACAAAAAAGGGTGCAGGTTATTGGTTATTTGATGAAATTCGTGCAGCATAATAATGAATTGACACTCTCCTCGATCACCGAGGTGAGAGAACGAAGGAGTGCCCAAATTAGAATGGGTGACTGGATGCACCATGGCTCTCTGCTGGGTCTATTGGGTGGCTGGACTTTCTGCCATTCAGACCCGGGCAACACCAGCAGGTGGGTAGCAGTTCCAGGGGATACTTGACTGTGAATATGATGACACCACTGATAATATGATCTACTTTTGTGAAAAACATATTCAACCAAAAATTGACCACCATCTATGACTCCAGGGTTCAGAAGTATGTGGGTTTTGGGGAGTTTGGCATACGCAATGCAGATCACTACAACAGCCAAGCTTGGGAAATGGCTATAAGGAAAGCAGAAGTGGAGACTATTTGCCGATACAGTGCAAGATACTTCAAACTGAGCACTTTGGAAAGAATAGTGCCTCCCATTGTCAAAGCCCGCCTGACCAAGCCCTCTCGCTACGCGGAGCTGTCCATGCTGGAGTGCAGCGTTCTAGGCTTCTACCCTCAGGAGGTGAGGGTGAGCTGGCTGAGAGACAGGCTGGAGACCACCATAGCCGTGACCTCCACAGACACACTGGCTAACGGGGACTGGAGCTACCAGCTCCACTCCTACCTAGAGTTCAGGCctcagagaggggagagtgtaaGCTGCATGGTTGAGCACCCCAGCCTAGATGAACCACTGGAGGTGGTCTGGGGTGAGAGACCTGGGGAAGAGAGGGAGTATTGTGGTCTGGAGTGAGagctggagggaggggaggacagtTGGAATGGAAATGTAGGGGAGAGGGGTacagtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacaacgccgaagtcgaggatcggtaggatagtcagttttacgagggtatgtttggcagcatgag
>XM_021594294.2
CAAGTCTATTTTTTTATGAAATGCATGATGTgtctaacatacagtatattttgaAGAATGTATGAAATGAAGTTGACAGATCTTTTGTGACAATACAGTATAACGACTCCACAAAGGCACTGATAAGGAGATTTACCTGAATCACGTAACAACAACATGTTTTTTGAGTGTACCTCATGGCACAATTACATGGAAAGGGATACAACAGTCCAAATGAATACATTTATTTGTTTCAGGTGGGTAGCAGTTCCAGGGGATACTTGACTGTGAATATGATGACACCACTGATAATATGATCTACTTTTGTGAAAAACATATTCAACCAAAAATTGACCACCATCTATGACTCCAGGGTTCAGAAGTATGTGGGTTTTGGGGAGTTTGGCATACGCAATGCAGATCACTACAACAGCCAAGCTTGGGAAATGGCTATAAGGAAAGCAGAAGTGGAGACTATTTGCCGATACAGTGCAAGATACTTCAAACTGAGCACTTTGGAAAGAATAGTGCCTCCCATTGTCAAAGCCCGCCTGACCAAGCCCTCTCGCTACGCGGAGCTGTCCATGCTGGAGTGCAGCGTTCTAGGCTTCTACCCTCAGGAGGTGAGGGTGAGCTGGCTGAGAGACAGGCTGGAGACCACCATAGCCGTGACCTCCACAGACACACTGGCTAACGGGGACTGGAGCTACCAGCTCCACTCCTACCTAGAGTTCAGGCctcagagaggggagagtgtaaGCTGCATGGTTGAGCACCCCAGCCTAGATGAACCACTGGAGGTGGTCTGGGGTGAGAGACCTGGGGAAGAGAGGGAGTATTGTGGTCTGGAGTGAGagctggagggaggggaggacagtTGGAATGGAAATGTAGGGGAGAGGGGTacagtgatagactgcatccaatttgctgagtagagtgttggaggctattttgtaaatgacaacgccgaagtcgaggatcggtaggatagtcagttttacgagggtatgtttggcagcatgag

Function

NR:

description
MHC class II antigen, partial

GO: NA

KEGG:

id description
K06752 MHC2; MHC class II antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005042063.1 False 1306 mRNA 0.47 5 25156376 25161150
XR_005042061.1 False 1184 mRNA 0.46 4 25156382 25161150
XM_036973108.1 False 1112 mRNA 0.48 3 25158273 25159773
XM_021594294.2 True 1006 mRNA 0.47 2 25158621 25159773

Neighbor

gene id symbol gene type direction distance location
LOC100136302 LOC106581989 coding upstream 9070 25137756 ~ 25147306 (+)
LOC110505167 tap1 coding upstream 20882 25127179 ~ 25135494 (+)
LOC110515353 pbx2 coding upstream 36934 25112639 ~ 25119442 (+)
LOC110515267 LOC106605278 coding upstream 55158 25076339 ~ 25101218 (+)
LOC118948035 LOC106605281 coding upstream 179892 24974626 ~ 24976484 (+)
vmo1b vmo1 coding downstream 1090 25162240 ~ 25165365 (+)
LOC110515419 LOC106582023 coding downstream 101723 25262873 ~ 25270428 (+)
LOC110515430 LOC106582018 coding downstream 114253 25275403 ~ 25335823 (+)
si:dkey-82o10.4 LOC106582066 coding downstream 402180 25563330 ~ 25566407 (+)
LOC110515550 LOC106582071 coding downstream 416016 25577166 ~ 25584936 (+)
G238506 NA non-coding upstream 8631 25147495 ~ 25147745 (+)
G238246 NA non-coding upstream 23135 25133040 ~ 25133241 (+)
G238243 NA non-coding upstream 29699 25126361 ~ 25126677 (+)
G238199 NA non-coding upstream 30979 25125077 ~ 25125397 (+)
G238519 NA non-coding downstream 13640 25174790 ~ 25175404 (+)
G238521 NA non-coding downstream 15184 25176334 ~ 25176607 (+)
G238524 NA non-coding downstream 17634 25178784 ~ 25179166 (+)
G238525 NA non-coding downstream 18437 25179587 ~ 25179819 (+)
G238528 NA non-coding downstream 21210 25182360 ~ 25182791 (+)
G238050 NA other upstream 380431 24775279 ~ 24775945 (+)
G238047 NA other upstream 390013 24765666 ~ 24766363 (+)
G238034 NA other upstream 405993 24749405 ~ 24750383 (+)
G236753 NA other upstream 1100709 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 1227289 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 34137 25195287 ~ 25199234 (+)
G239026 NA other downstream 379619 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1052492 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1166258 26327408 ~ 26328331 (+)
G240244 NA other downstream 1890036 27051186 ~ 27051954 (+)

Expression


Co-expression Network