vmo1b (vmo1)


Basic Information

Item Value
gene id vmo1b
gene name vmo1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25162240 ~ 25165365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594286.2
TCACTGCCTTTGTTCCATCCCTTCTGTGGATGAGACTGACTTCTGTCAACATGACTACCCCTCTTTTCACTGCTCTGTCCTTCCTGGCTGTGCTGGCCCTTGGGTCATGTCTAGCTCTCTTGCCCGAGGAGCAGCCCTATGTGGAGCGTGCTGGTATCCAATACAGCGCTAGGCCTTacacctccctcctcaccgtGCCCAATGGAGAGCAGTTTGGGAACTGGACCTGGCCCGAGATGTGTCCCGACAAGTTCTTCGCCGTTGGGTTCATGCTCCGGGTGGAGTCTGAACAGTACGGTCTGGACGACACTGCCCTGAATGGCATTCGCTTGATCTGCGCTAAGGACGAAGATAGGAGCTTCTTGTACACCATTGAGTCTCACACTGGATTctTTGGTGACTGGTCGGACCCCCAGTATTGCCCCAGGGGTGTGCTGACTTCCTTCCAGCTGCGTGTGGAGCCCCACCAGGGTCTGTTCGGTGACGACACAGCCGCCAACAACGTCAGGTTCCGCTGCAGCAGCAACCCCACCCTCGCAGGCGCCGGCCTGGACTACGGTGAGTACAGCCTCTGGAGCCAGGATTGTGGCGATGGAGGAATCTGTGGCATCGAGACCAAGATGGAGGAATACCAGTACGGTCTGGATGACTCATCTCTCAATGACGTGCGCTTCCACTGCTGCGCCAAACTCCAGCAGTAATCATCTGAGGGAGATACCTCTTCTGGACCAATCTCAACCAACCAACTGGCCCAGGACCTGTCAACACACAGGCTCTGACCCATGGTCCATTCAATCCAATCTACACCCAATATCTGAATCTGCCACTGGTTAAAACCTAATAAATCATTCAACTGTC

Function

symbol description
vmo1 Located in extracellular exosome.

NR:

description
vitelline membrane outer layer protein 1 homolog

GO:

id name namespace
GO:0030704 vitelline membrane formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594286.2 True 858 mRNA 0.55 4 25162240 25165365

Neighbor

gene id symbol gene type direction distance location
LOC110515374 NA coding upstream 1090 25156376 ~ 25161150 (+)
LOC100136302 LOC106581989 coding upstream 14934 25137756 ~ 25147306 (+)
LOC110505167 tap1 coding upstream 26746 25127179 ~ 25135494 (+)
LOC110515353 pbx2 coding upstream 42798 25112639 ~ 25119442 (+)
LOC110515267 LOC106605278 coding upstream 61022 25076339 ~ 25101218 (+)
LOC110515419 LOC106582023 coding downstream 97508 25262873 ~ 25270428 (+)
LOC110515430 LOC106582018 coding downstream 110038 25275403 ~ 25335823 (+)
si:dkey-82o10.4 LOC106582066 coding downstream 397965 25563330 ~ 25566407 (+)
LOC110515550 LOC106582071 coding downstream 411801 25577166 ~ 25584936 (+)
LOC110515597 LOC105021876 coding downstream 551922 25717287 ~ 25747404 (+)
G238506 NA non-coding upstream 14495 25147495 ~ 25147745 (+)
G238246 NA non-coding upstream 28999 25133040 ~ 25133241 (+)
G238243 NA non-coding upstream 35563 25126361 ~ 25126677 (+)
G238199 NA non-coding upstream 36843 25125077 ~ 25125397 (+)
G238519 NA non-coding downstream 9425 25174790 ~ 25175404 (+)
G238521 NA non-coding downstream 10969 25176334 ~ 25176607 (+)
G238524 NA non-coding downstream 13419 25178784 ~ 25179166 (+)
G238525 NA non-coding downstream 14222 25179587 ~ 25179819 (+)
G238528 NA non-coding downstream 16995 25182360 ~ 25182791 (+)
G238050 NA other upstream 386295 24775279 ~ 24775945 (+)
G238047 NA other upstream 395877 24765666 ~ 24766363 (+)
G238034 NA other upstream 411857 24749405 ~ 24750383 (+)
G236753 NA other upstream 1106573 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 1233153 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 29922 25195287 ~ 25199234 (+)
G239026 NA other downstream 375404 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1048277 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1162043 26327408 ~ 26328331 (+)
G240244 NA other downstream 1885821 27051186 ~ 27051954 (+)

Expression


Co-expression Network