LOC110515419 (LOC106582023)


Basic Information

Item Value
gene id LOC110515419
gene name LOC106582023
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25262873 ~ 25270428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973158.1
CATTTATTGTGTAATATTGACAGCCTCTGCATCATTAGTAGTGAAAGAAAAGGTGAGCCTACCACAGTCACGAATATAGCCCTGCGTTGGCCCTATAAAAGGAAAAAGAACAGCACCAAGCACCACTCAACCTCCTTGAAGACCCATGAGCAGATAGGTGCAGTGTCTCTCTCCTGGATTTCAGGCACAATGTTTGCGTTATTGGTTTGCATCCTGACACTGCATGAAGTGTACACTGTGTGCAATGTGGTAAaaattTGCCCAGACAGCACAGCAGTTCAGGCTGAGATCCTTAACCAGCACAACGCCTTCCGGAGAGCGGTTACGCCAACTGCTAGAGACATGCTCAAGATGAACTGGAGCGAGGAGGCAGCGGCCAGTGCTCAGGCTTGGGTTGACACCTGCTCCATGGCTCATGGCCCACCCAGCAGTCGCATGCTTGGCGACTACGAAATGGGTGAGAACCTGTTCATGTCCTCCGCTTCTAAGAATTGGACTCAAATCGTTACAGCCTGGCACAGTGAGGTCATAGACTACTCCTATCCCAATGGATCTATCAATGGTAAATCCATCGGCCACTACACACAGGTGGTTTGGAACAGTTCATACAAGGTTGGCTGTGGTGTGGCCCTGTGTCCTGGCTCAGTCTACTTCTATGGATGCCAGTATTACAGAGCGGGAAACTACAGAGGAGTGGCTCCTTACAAGGAAGGAGCTACATGTGCCGACTGCCCCAACTCCTGCGAAAATAAGCTTTGCACCAATCCCTGTCCTTACATAAACAAGTATGTCAATTGTGCCGCCATGAAAAAACAGGCCGGGTGCAGTAATCCTTTGGTGTACGCCTGGTGTCCCGCCCTCTGCCTGTGCACCTCCAAAATCATCCCAATAGCAAAGAAGTGAAACCACCAGACCTCTCCAAAATGGTCCACTGAAAGATAACTTTGAATGATTCCTCTGTTGTTTCCTTGTctatgagaagaagaaaaaaaacatcaaaCCTGGTTGATCTATCTACTGTACTTCTGGTAAAGTCAGTTGATTTGAAAAATACTAACTATCACTAATAATATTTTAATTATCACTGTAGGTCTAAGGTACAGATAAAACATGATTCTTATTCTGGGGGTAACATAAGGTGTATAACCTACAGTAACTAATGTTAGTTTGAAGCGTTGCAATTGATTTTGTTCCCTTTCATTGGTTTCAATGTCTTCACACCCATTTCACCAAAGAAAATCCATTTTTGATTTGCATGGAAGTTGAATAAGAATATCCTCTCCATTTTGAGAAGCAATATTTCCATCAGTTACAGTAACAGTGAACACGTTGATCATTTAGCTAATTAACCACACAGTAATATGGTTATACAGAACTGTAATACCTCAACACATTTAACTTTAAGTTGATTTATGCTGCTCACCATTTGCTCTATCAACATTAAATGTTTGCACATGACAGAAATATATAACCCTTATTATTTTCCTTAATCACATTAAATGATCATGAAGATTAATTCATGGACTCTGTGTTAATGGTTTTACAACTCACTATCAGATAGTCAGCGTCACCACCAGATGCCTCTGTTGTACAACAGTAAATTCTGTAAATTCTGTATCAGAATAACATGACCGTCTGCAGGCTTGAtatacactgccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K19919 CRISP1_2_3; cysteine-rich secretory protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973158.1 True 1707 mRNA 0.42 8 25262873 25270428

Neighbor

gene id symbol gene type direction distance location
vmo1b vmo1 coding upstream 97508 25162240 ~ 25165365 (+)
LOC110515374 NA coding upstream 101723 25156376 ~ 25161150 (+)
LOC100136302 LOC106581989 coding upstream 115567 25137756 ~ 25147306 (+)
LOC110505167 tap1 coding upstream 127379 25127179 ~ 25135494 (+)
LOC110515353 pbx2 coding upstream 143431 25112639 ~ 25119442 (+)
LOC110515430 LOC106582018 coding downstream 4975 25275403 ~ 25335823 (+)
si:dkey-82o10.4 LOC106582066 coding downstream 292902 25563330 ~ 25566407 (+)
LOC110515550 LOC106582071 coding downstream 306738 25577166 ~ 25584936 (+)
LOC110515597 LOC105021876 coding downstream 446859 25717287 ~ 25747404 (+)
LOC110515611 LOC106582094 coding downstream 477358 25747786 ~ 25757241 (+)
G238622 NA non-coding upstream 24946 25237720 ~ 25237927 (+)
G238620 NA non-coding upstream 25580 25237085 ~ 25237293 (+)
G238534 NA non-coding upstream 71471 25191140 ~ 25191402 (+)
G238533 NA non-coding upstream 71960 25190668 ~ 25190913 (+)
G238531 NA non-coding upstream 73100 25189570 ~ 25189773 (+)
G238774 NA non-coding downstream 87906 25358334 ~ 25358552 (+)
G238790 NA non-coding downstream 99811 25370239 ~ 25370458 (+)
G238916 NA non-coding downstream 192377 25462805 ~ 25463214 (+)
G238923 NA non-coding downstream 194174 25464602 ~ 25464806 (+)
G238937 NA non-coding downstream 223988 25494416 ~ 25495060 (+)
G238540 LOC106582009 other upstream 63639 25195287 ~ 25199234 (+)
G238050 NA other upstream 486928 24775279 ~ 24775945 (+)
G238047 NA other upstream 496510 24765666 ~ 24766363 (+)
G238034 NA other upstream 512490 24749405 ~ 24750383 (+)
G236753 NA other upstream 1207206 24055319 ~ 24055667 (+)
G239026 NA other downstream 270341 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 943214 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1056980 26327408 ~ 26328331 (+)
G240244 NA other downstream 1780758 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 1986160 27240708 ~ 27264405 (+)

Expression


Co-expression Network