LOC110515528 (LOC106582056)


Basic Information

Item Value
gene id LOC110515528
gene name LOC106582056
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25568039 ~ 25575807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594403.2
AAGGTATAATTTTGTTGTCTTTATTCTAGAACTCTTGCACAGTAAGCCTATAATTATAGCACCAATCAGATCAAGCCTCGGTTTCCTAGTGGCGGTTGCCATGTGACTCGAGATAAACATTCTATCAGAATGTCCTGGAATTTGATACAAAGTAGCCATCTTAAGCTTCTCTCTTCAGAATGAAACATTGTAACTAGCAACTAGACATGTAAACCCGTGTTGAGTAGGCTACATATTTTTTATAGCAACTTGTCGATACGCTAACGATATGAATATGATAGAAAAGAATGCAACCAACACCTGGAAATACACCGAAAGTTTACCGAATATTCGAAGGGCTGGGAAACTTATTCCTGTAGGTGACAGAGCTAAGGCTTGCTTACAAGAAATATCACCCAAGCCCCAAACCCCACCAGTAGTGAGGAAGTTTCTCAACACAACACGCCCAGGTGCAGGGGCTATCCGAGTGTTCCATGGGAAAGCCAACGACCCTGATATTGCCAGTACTCTAGTTCATGGAGTGAGCAGCCAAGCTTCTATTTCTGGTGGATTAGTGATCAACCCACCACCTAAGACCATCTATCAACAGAGGTTACAGCAGCTCAGTGAAGCTGGGTATTCCACCAATCAAAAAGCCCCCCTGGGCAGGTCACATGATCAAAGCCCTGGGCTTCCAAATTGTCTCGACATTGGCAACGCCACATTTGGTGTGAAATCCCCCAACAGTGCAGCTGCAGGTGTGATTATCAACCCACCTAAAAGTGCAGAGCAGGTGGCGACAGAGGCTCAGGAGGGACACCAGTCTTATATCCGCTCCCACAATGCCTACTTTGTCGGTGAACAGGTTGATAGGAAATACAAGTGGAGCCATTATGGAAAGGACGGCAGGTTCGGAGTGCCTACTCCCCACCACAACGATGGACGCAGTGTCTCCAAATCTCTCCACTGGTTGTGTGATACTCAGAAGCATAACAGTGCAAAGTTTGTTTCTCGGAGATGTGATGACTTCAGGGAAAGGACACAGCCACAGATTGGCAAGGTGCATGACCCCATAGCAGACACATTGAAAGTGCCAGCAGGTCACACATTTGGAATCTTGATGCGGCCAGATGACTTTGGTGCGGGTGACCttctccactcaacccctccagCAGAGTACCAgaaaggcacagacagacagcgcACCCTGGTCAGTGCTGTACGCCAGCACCTCAAGAAGGTCAACTTCCACCACTTTAACTCCCTGCTGCAGGCCTTCAGGCACTACGACAAGAAGGGTCAGGGTGTGATCGACAAGGAGGACCTGCGGGACGTGTGTCGTCAGTTTAACCTGGACCTGAGTGGGCCGATGCTGGATGACTTGATGGAGTACTGTGACGTGGACAAAGACGGACTCATCAACTTTCTGGAGTTTGCCAACTTCCTCAACTGGAAGGACAAAATGCCCATCAGTAAAGTGGAGCAGCGCATTCTGACCAGTGAGTGTAAGACCAGCACAGCCCCAGATAACATGCAGAGAGAGACTCTCCCTGTGAGACCTGCAGCCTCAGAGGCTTTGGCCAGACCGGAGGACCTGGAGCCTGCAGAGGTGGGCAGCATGCTGAAGACCCCCAAGACCCTCAACAGACCCAGGACCATCCAGGACCGCTtcgtcacctcctcctctctcatccggGCTGTCGTGGGTGGTCTCCCTACAACTGACTATCGTATGTACGGGACTCCCACAGTGCGCACCGACCTGGCGGCCCCGCGGATCAAGCGCGTCAGCGACAGCACTAACTACGGTGACCAGACCACGGCCTTTGACCTCCTGTATCCTGCGCTGCACTCCCTAAGGGGAGTCCACAAGGAGCACTTCTTCTGCCCCCGAACCAAAGAGGAGATTGCTGACATATTCCGAAATGTGGGCGTGAGTATTTCCGCGGAGACATTTGAGGAGGTGTGGAAACTGGCATCCATGAGACACCCCACTGGGGACGTGTGTGTGGAGATTTTCCGGGACGTTCTAAAGGAAATTCAAGCTAATTAAATCTGAATAGTATCTTTTACCACCTCAGTATCTATTCCGTGAAAGAAAGTACTTCAAGTATTACATATACTACATAAGTGTTATTCTTCTTTTTTTCCTGTGAGAATAACTATTAATTGTCATATTAACTGTCATTAAAATTATTTTTTGATTGTG

Function

NR:

description
EF-hand domain-containing family member B

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23929 EFHB; EF-hand domain-containing family member B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594403.2 True 2188 mRNA 0.49 13 25568039 25575807

Neighbor

gene id symbol gene type direction distance location
LOC110515443 LOC106605270 coding downstream 46210 25465851 ~ 25521829 (-)
LOC110515384 LOC106582009 coding downstream 331503 25171287 ~ 25236536 (-)
notchl LOC106581966 coding downstream 442597 25119183 ~ 25125442 (-)
LOC110515302 LOC106581964 coding downstream 456923 25107822 ~ 25111116 (-)
LOC110515290 LOC106581956 coding downstream 461403 25101393 ~ 25106636 (-)
LOC110503974 NA coding upstream 8134 25583941 ~ 25589424 (-)
LOC110515569 LOC106605268 coding upstream 20897 25596704 ~ 25643498 (-)
LOC110515676 LOC106582133 coding upstream 224430 25800237 ~ 25810648 (-)
LOC110515750 LOC106582146 coding upstream 247005 25822812 ~ 25825108 (-)
LOC110515765 LOC106582155 coding upstream 261830 25837637 ~ 25854424 (-)
G239050 NA non-coding downstream 26635 25540874 ~ 25541404 (-)
G238922 NA non-coding downstream 103492 25464226 ~ 25464547 (-)
G238816 NA non-coding downstream 175409 25392404 ~ 25392630 (-)
G238802 NA non-coding downstream 186288 25381521 ~ 25381751 (-)
G238798 NA non-coding downstream 190338 25377475 ~ 25377701 (-)
G239133 NA non-coding upstream 1413 25577220 ~ 25578695 (-)
G239138 NA non-coding upstream 15544 25591351 ~ 25591550 (-)
G239402 NA non-coding upstream 235398 25811205 ~ 25813187 (-)
G239480 pngf non-coding upstream 256205 25832012 ~ 25834240 (-)
LOC110515208 LOC106581894 other downstream 601831 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 797716 24767049 ~ 24799511 (-)
G237832 NA other downstream 1046495 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 1384075 24180556 ~ 24183964 (-)
G240409 NA other upstream 993294 26569101 ~ 26569522 (-)
G240464 NA other upstream 1098785 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1495248 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1536375 27111084 ~ 27127488 (-)

Expression


Co-expression Network