LOC110515550 (LOC106582071)


Basic Information

Item Value
gene id LOC110515550
gene name LOC106582071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25577166 ~ 25584936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594422.2
gtgtgattggtttATTCTCAGTGCTACGTAGCCATTCGATCTATCATCATACACTGTGCCATGCAAAACAAACGGGAAGTTGGAAGAAGTGGGAAAGGGACAAGTTTTATGACATTTCTCGCCCTGTGAATATATTTGAGTGCccgaaaatattatttttttgaaATCCATTCAGCTACCTAGCTAGTTAGTTAACTCGGATAGGTTCTAGGAGTGACCATACAAGCAGTACTTCTGCATCCAGAGAAAGAGACTGGGGTGTAAGGACATGGCAAGTAGGGGTGGTGCAACACGACCCAATGGGCCGAACACAGGCAACAAGATCTCCCAGTTCAAATTAGTACTCTTAGGGGAGTCCGCTGTGGGAAAGTCCAGTCTGGTACTTCGTTTTGTCAAGGGCCAGTTTCATGAATTCCAAGAGAGCACAATTGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGCCTAGCACCTATGTACTACAGAGGTGCCCAGGCCGCCATCGTGGTCTACGACATAACTAACAAAGAGTCCTTTGCACGAGCAAAGAACTGGGTTAAGGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCGTTGGCTGGGAACAAAGCTGACCTTGCAAACAAACGAGCATTGGATTTTCAGGATGCCCAGTCATACGCAGAGGATAACAGTTTACTGTTCATGGAAACATCAGCAAAGACCTCTATGAACGTTAATGAGATGTTCATGGCTATTGCAAAGAAATTACCCAAGAACGAGCCTCAAGCTGCCGGAGCGAACAGTGGACGGAACCGGGGAGTGGATCTTACGGAGACAGCTCAGCCAGCCAGCCGCTCCTGCTGCAGTACCTAAACCTGGCCCACTCTTCCTAACTCTGAATCACATCTGGACATGGTGTTCCCCTTCCTGACATCAGACCTTCCACCTCTCGTCCTTTCTCCTGGGAATAGCTGAAGACTCTGTATAGCTGCATTTCTAATACTTTGTTTGGTTTTACTTTTCATTTTAAAGTGTATATCAGTATAATGTATGCATGTATCACTACAAGgcctaaaacatttttttattttatttttttacttcagttgGAAGACTAGCCCCTACGAGAGAGagtaagcagtgtgtgtgtgtgactgattcCCTGAAGAGAAAGTGTAACCTAGGTCATAGGGTTATTGGACTGGGGGTAAAAGTGAGTTGAGTGTCCTTCCAACCAGAACAAATCAAATTCCCCCATTGTGAAATGCCTGGAGGCTATGACAGTTTGTACTGGGTATAATACCATTATTGAAGCAGTGTCAGGTAAGGACTATCAAATCAAGCATTCCCCCTTGCACCTGCTGCCGAGATGACGACATCTCCGTCTGCAGAGAAGTTTGGCAAGAACATCCAACGCCATTACACCACTGGCCCACTGCAACCGGTTGAATAGGATAAAAGGGTGGTTTTGTGATTGGATGGCTGGTGACTCTGCAAGTGTGTCACATCTATGATGACTGCCTTGTGCATCATGGGAAGTCCTTCAAACCACAATATTCTCTGGTTGATACATTGATTTAAGGAAGAACACTGAGACAGTTGGACATGCTCAGACAAGTTTTGTAAAATGTCTTGCTAACATAACACCTAACATATGACTAGTCCTTTGTTTCCCCAAACTGTTATTGTTCAGTTATCAACTTGTCAGAATTAGTGGTGTTTAAAAGTAGGCCTCAAACCATGCACCAACATAAGTCTTGACTATTACCTATCATCAGTCTGTGGAATATTACTCTGTTATATAGGGTGTTGCAATGTTGTCTTCTACCAATACAGCTTGGAGGGCATAAGCTTGTCAGGAAAGTATCTAGAGATTCCGAACAATTTTACAGTACACCAATGTAGGTCTAGGTCTGCTATTGGTTTGTTACCTTGTCACAAACAAACTGGTTAAATGCTAATCAATGGTGTTCTTTTTAAATATGTAGTGTTATTAACAATTCAATTGTATCTCCTGTGTCTTGTTACTTTTCTCAATGGTCTGTTCATATTTGAGAGGACTATTGCATTGCACAATTGTTGGTTATAATTTTAATTAATGCTTGGCCATTACAATTTATAAAACTGATGCACTGTGTCGGACTTGCTAACCTATTGCCTCAAACAACTGGACGTGGTACTAACTGACTGGTAGTCTTTCTGAAGCCAGGTGGATTTAACAATGTCAAACATGACTAGTGAAGGACTGATCAGTTTGAGTGTGAGGGTACAAGTCAATAAATTAGGTATATTGTATGCCTTTATGTTTTTGATAT
>XM_021594428.2
TAACTCGGATAGGGTAAGTAGATATCATTCTCGCTAGCTGATTTACCGGCAGAACTAGCTTGCTAGGCCGAAAGCTATGTTTTGTTAGCTAGCTCACATCAAATAATAAACCAACAGTTGACCCGTTCTTAATATACCGCTTTCTAGGAGTGACCATACAAGCAGTACTTCTGCATCCAGAGAAAGAGACTGGGGTGTAAGGACATGGCAAGTAGGGGTGGTGCAACACGACCCAATGGGCCGAACACAGGCAACAAGATCTCCCAGTTCAAATTAGTACTCTTAGGGGAGTCCGCTGTGGGAAAGTCCAGTCTGGTACTTCGTTTTGTCAAGGGCCAGTTTCATGAATTCCAAGAGAGCACAATTGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGCCTAGCACCTATGTACTACAGAGGTGCCCAGGCCGCCATCGTGGTCTACGACATAACTAACAAAGAGTCCTTTGCACGAGCAAAGAACTGGGTTAAGGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCGTTGGCTGGGAACAAAGCTGACCTTGCAAACAAACGAGCATTGGATTTTCAGGATGCCCAGTCATACGCAGAGGATAACAGTTTACTGTTCATGGAAACATCAGCAAAGACCTCTATGAACGTTAATGAGATGTTCATGGCTATTGCAAAGAAATTACCCAAGAACGAGCCTCAAGCTGCCGGAGCGAACAGTGGACGGAACCGGGGAGTGGATCTTACGGAGACAGCTCAGCCAGCCAGCCGCTCCTGCTGCAGTACCTAAACCTGGCCCACTCTTCCTAACTCTGAATCACATCTGGACATGGTGTTCCCCTTCCTGACATCAGACCTTCCACCTCTCGTCCTTTCTCCTGGGAATAGCTGAAGACTCTGTATAGCTGCATTTCTAATACTTTGTTTGGTTTTACTTTTCATTTTAAAGTGTATATCAGTATAATGTATGCATGTATCACTACAAGgcctaaaacatttttttattttatttttttacttcagttgGAAGACTAGCCCCTACGAGAGAGagtaagcagtgtgtgtgtgtgactgattcCCTGAAGAGAAAGTGTAACCTAGGTCATAGGGTTATTGGACTGGGGGTAAAAGTGAGTTGAGTGTCCTTCCAACCAGAACAAATCAAATTCCCCCATTGTGAAATGCCTGGAGGCTATGACAGTTTGTACTGGGTATAATACCATTATTGAAGCAGTGTCAGGTAAGGACTATCAAATCAAGCATTCCCCCTTGCACCTGCTGCCGAGATGACGACATCTCCGTCTGCAGAGAAGTTTGGCAAGAACATCCAACGCCATTACACCACTGGCCCACTGCAACCGGTTGAATAGGATAAAAGGGTGGTTTTGTGATTGGATGGCTGGTGACTCTGCAAGTGTGTCACATCTATGATGACTGCCTTGTGCATCATGGGAAGTCCTTCAAACCACAATATTCTCTGGTTGATACATTGATTTAAGGAAGAACACTGAGACAGTTGGACATGCTCAGACAAGTTTTGTAAAATGTCTTGCTAACATAACACCTAACATATGACTAGTCCTTTGTTTCCCCAAACTGTTATTGTTCAGTTATCAACTTGTCAGAATTAGTGGTGTTTAAAAGTAGGCCTCAAACCATGCACCAACATAAGTCTTGACTATTACCTATCATCAGTCTGTGGAATATTACTCTGTTATATAGGGTGTTGCAATGTTGTCTTCTACCAATACAGCTTGGAGGGCATAAGCTTGTCAGGAAAGTATCTAGAGATTCCGAACAATTTTACAGTACACCAATGTAGGTCTAGGTCTGCTATTGGTTTGTTACCTTGTCACAAACAAACTGGTTAAATGCTAATCAATGGTGTTCTTTTTAAATATGTAGTGTTATTAACAATTCAATTGTATCTCCTGTGTCTTGTTACTTTTCTCAATGGTCTGTTCATATTTGAGAGGACTATTGCATTGCACAATTGTTGGTTATAATTTTAATTAATGCTTGGCCATTACAATTTATAAAACTGATGCACTGTGTCGGACTTGCTAACCTATTGCCTCAAACAACTGGACGTGGTACTAACTGACTGGTAGTCTTTCTGAAGCCAGGTGGATTTAACAATGTCAAACATGACTAGTGAAGGACTGATCAGTTTGAGTGTGAGGGTACAAGTCAATAAATTAGGTATATTGTATGCCTTTATGTTTTTGATAT
>XM_036973287.1
AACCAATGGGTGGGACTGAGAAAGCTAATCATTATTTTTCGACGGACACAGTGCTTGTTGATAACAAGTTTGAGCCGCCATCCTAactgactagctagctagtcaaCACTGGTTATTAGTGGGCAAGACTTACGTAACACGAGTTCGAACCACATGTCTTCACTGCAATTATTTTTGGCTAGACATGGGCTTGTTATGTTTACTTGTTGGTTCTAGGAGTGACCATACAAGCAGTACTTCTGCATCCAGAGAAAGAGACTGGGGTGTAAGGACATGGCAAGTAGGGGTGGTGCAACACGACCCAATGGGCCGAACACAGGCAACAAGATCTCCCAGTTCAAATTAGTACTCTTAGGGGAGTCCGCTGTGGGAAAGTCCAGTCTGGTACTTCGTTTTGTCAAGGGCCAGTTTCATGAATTCCAAGAGAGCACAATTGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGCCTAGCACCTATGTACTACAGAGGTGCCCAGGCCGCCATCGTGGTCTACGACATAACTAACAAAGAGTCCTTTGCACGAGCAAAGAACTGGGTTAAGGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCGTTGGCTGGGAACAAAGCTGACCTTGCAAACAAACGAGCATTGGATTTTCAGGATGCCCAGTCATACGCAGAGGATAACAGTTTACTGTTCATGGAAACATCAGCAAAGACCTCTATGAACGTTAATGAGATGTTCATGGCTATTGCAAAGAAATTACCCAAGAACGAGCCTCAAGCTGCCGGAGCGAACAGTGGACGGAACCGGGGAGTGGATCTTACGGAGACAGCTCAGCCAGCCAGCCGCTCCTGCTGCAGTACCTAAACCTGGCCCACTCTTCCTAACTCTGAATCACATCTGGACATGGTGTTCCCCTTCCTGACATCAGACCTTCCACCTCTCGTCCTTTCTCCTGGGAATAGCTGAAGACTCTGTATAGCTGCATTTCTAATACTTTGTTTGGTTTTACTTTTCATTTTAAAGTGTATATCAGTATAATGTATGCATGTATCACTACAAGgcctaaaacatttttttattttatttttttacttcagttgGAAGACTAGCCCCTACGAGAGAGagtaagcagtgtgtgtgtgtgactgattcCCTGAAGAGAAAGTGTAACCTAGGTCATAGGGTTATTGGACTGGGGGTAAAAGTGAGTTGAGTGTCCTTCCAACCAGAACAAATCAAATTCCCCCATTGTGAAATGCCTGGAGGCTATGACAGTTTGTACTGGGTATAATACCATTATTGAAGCAGTGTCAGGTAAGGACTATCAAATCAAGCATTCCCCCTTGCACCTGCTGCCGAGATGACGACATCTCCGTCTGCAGAGAAGTTTGGCAAGAACATCCAACGCCATTACACCACTGGCCCACTGCAACCGGTTGAATAGGATAAAAGGGTGGTTTTGTGATTGGATGGCTGGTGACTCTGCAAGTGTGTCACATCTATGATGACTGCCTTGTGCATCATGGGAAGTCCTTCAAACCACAATATTCTCTGGTTGATACATTGATTTAAGGAAGAACACTGAGACAGTTGGACATGCTCAGACAAGTTTTGTAAAATGTCTTGCTAACATAACACCTAACATATGACTAGTCCTTTGTTTCCCCAAACTGTTATTGTTCAGTTATCAACTTGTCAGAATTAGTGGTGTTTAAAAGTAGGCCTCAAACCATGCACCAACATAAGTCTTGACTATTACCTATCATCAGTCTGTGGAATATTACTCTGTTATATAGGGTGTTGCAATGTTGTCTTCTACCAATACAGCTTGGAGGGCATAAGCTTGTCAGGAAAGTATCTAGAGATTCCGAACAATTTTACAGTACACCAATGTAGGTCTAGGTCTGCTATTGGTTTGTTACCTTGTCACAAACAAACTGGTTAAATGCTAATCAATGGTGTTCTTTTTAAATATGTAGTGTTATTAACAATTCAATTGTATCTCCTGTGTCTTGTTACTTTTCTCAATGGTCTGTTCATATTTGAGAGGACTATTGCATTGCACAATTGTTGGTTATAATTTTAATTAATGCTTGGCCATTACAATTTATAAAACTGATGCACTGTGTCGGACTTGCTAACCTATTGCCTCAAACAACTGGACGTGGTACTAACTGACTGGTAGTCTTTCTGAAGCCAGGTGGATTTAACAATGTCAAACATGACTAGTGAAGGACTGATCAGTTTGAGTGTGAGGGTACAAGTCAATAAATTAGGTATATTGTATGCCTTTATGTTTTTGATAT

Function

NR:

description
ras-related protein Rab-5A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594422.2 False 2361 mRNA 0.43 6 25577166 25584936
XM_021594428.2 False 2297 mRNA 0.43 6 25577358 25584936
XM_036973287.1 True 2366 mRNA 0.43 6 25577826 25584936

Neighbor

gene id symbol gene type direction distance location
si:dkey-82o10.4 LOC106582066 coding upstream 10759 25563330 ~ 25566407 (+)
LOC110515430 LOC106582018 coding upstream 241343 25275403 ~ 25335823 (+)
LOC110515419 LOC106582023 coding upstream 306738 25262873 ~ 25270428 (+)
vmo1b vmo1 coding upstream 411801 25162240 ~ 25165365 (+)
LOC110515374 NA coding upstream 416016 25156376 ~ 25161150 (+)
LOC110515597 LOC105021876 coding downstream 132351 25717287 ~ 25747404 (+)
LOC110515611 LOC106582094 coding downstream 162850 25747786 ~ 25757241 (+)
LOC110515629 LOC106582110 coding downstream 175278 25760214 ~ 25771793 (+)
LOC110515656 LOC106582123 coding downstream 197339 25782275 ~ 25800223 (+)
LOC110515724 LOC106582140 coding downstream 226091 25811027 ~ 25823121 (+)
G239043 NA non-coding upstream 15361 25561588 ~ 25561805 (+)
G239040 NA non-coding upstream 18989 25557940 ~ 25558177 (+)
G239033 NA non-coding upstream 23470 25553449 ~ 25553696 (+)
G238937 NA non-coding upstream 82106 25494416 ~ 25495060 (+)
G238923 NA non-coding upstream 112360 25464602 ~ 25464806 (+)
G239073 NA non-coding downstream 6683 25591619 ~ 25591884 (+)
G239196 NA non-coding downstream 99475 25684411 ~ 25684627 (+)
G239217 NA non-coding downstream 124485 25709421 ~ 25709704 (+)
G239280 LOC106582155 non-coding downstream 254666 25839602 ~ 25840173 (+)
G239026 NA other upstream 35553 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 377932 25195287 ~ 25199234 (+)
G238050 NA other upstream 801221 24775279 ~ 24775945 (+)
G238047 NA other upstream 810803 24765666 ~ 24766363 (+)
G238034 NA other upstream 826783 24749405 ~ 24750383 (+)
G239697 LOC106582257 other downstream 628706 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 742472 26327408 ~ 26328331 (+)
G240244 NA other downstream 1466250 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 1671652 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 1971236 27556172 ~ 27558532 (+)

Expression


Co-expression Network