LOC110515569 (LOC106605268)


Basic Information

Item Value
gene id LOC110515569
gene name LOC106605268
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25596704 ~ 25643498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036973309.1
GATGGCTGCAGAAGGACATGCTTTGTTAAAGGAGAACTGGGACGCGTCTCCGCATGAGCATCGGCATTTGCTGCTTTCCAACAGATGGCAGCGCTCCTCTGAGCGGAGGGAAAAAAATACGTTtggtttccctccctctctctctccctctttcttttttacaactgcttctttTTATTCAGCCTTACCATCGCCTGGGGACTTGATGTGGCAAACATAGTTTTTATTTGCCTCAAACCGGTGTTTTGATATGGTATCTGCGCTTTTAGTCATGCTGGCTCCGAGTTCGTCATGTTGTTAAATGTGCTGTGTTAAAAGTCATCCCTGGTTCTAATTAATGGGTAATGCATGTCAAAATGGCCTCCTGCCGACGCTGATACGTCCTGCTCTGCCCACCATCCAGCAGTCTCTGGGCATGAAGCAGTTCCAGCTCCCGTTTCCCCTGGATACGGCCTCAGCAGTCAGCCTTTTCCCCGGCTTCGGCACGatggaCCCAGTTCAGAAGGCTGTTATGCATCACACGTTTGGAGTTCCTCCCTTGACCAAGAGAAGACACGTCTCGTGCAGCGTGTGCCAACTGAGATTCAACTCACAGAGCCAAGCCTTAGCCCACTACAAAGGAACAAAACACGCCAAGAAGCTGAAATCTCTGGACGCTACCAAATGTAAGCTCAGAGGTTCAGTGGTCACCAAGGAAACCACCAACCATGAAACCCCTAAGAGCATCAACCCTCCAGCAATGTGCTACGGCACTGACAGGAAAGATGGCTTTCCAGGTGCATCGCCGCTACCACTATCTCCTGTGCTCACACTGGCTCCAACCCTGGGATCCCTGGCATCATCCCTGGCACCCATGACATCAATGTTACCACCCCTGGCACCTACGCTGGCATCGAGTCCCAACTCATCCACAGGGACAGAGACTACCTCAGCTACAGGATGGGACGACCGGGCCTCGCCCAAACCCAGCTCACCTATAGAACCAGACATGGAGGAGGAGCAAGAGGCTGAGACAGACCCGGAGACGGAGGAAGAGAAAGCCAGGCGTCTGCTCTACTGCTCGCTCTGCAAGATGGCCGTCAACTCGGCATCCCAACTGGAGGCTCATAACAGCGGTACGAAGCACAAGACCATGCTAGAGGCCAGGAGTGGTGTGGGCTCCATCAAGTCCTTCCCCCGGCCAGGGGTCAAGAGCAAGCTAGCTCCGCCCACCAAGGCAGCCACGGGCCTGCagaacaaaacatttcactgtgagaTCTGCGATGTGCACGTCAACTCCGAGACACAGCTAAAACAGCACATCAGCAGCAGACGTCACAAAGACCGAGCGGCAGGCAAACCGGCCAAACCCAAATACAGTCCCTACAGTAAACTCCCGAAAGGCCAGGCCACACAACCAGTGAAGCTGACAGTGGGGAAGGAGTTGTGCCAACCTCAGATAACCCAGATAATGCCCGCTCACCTGGCAGCATTGgcatcagcagcagcagctatGGGCTCGGCCTTCCCCGGCCTCCGCTCCACCCACGCTCCCTCCCGTGGCCCCACCCTTTTTCAGACACAGACCCTCCCTGCTGCCCTGCTCCGCCCCGCCCCCGGGCCTGTCAGGACCTCCCATACACAGTTACTGTTTGCCCCCTACTGACTCACAACCCTATAGACTCTATGGACTTCCCATGACGGACATGCCACGGAAGTTATTATGAACCAGAGTCCCCTTCCCTCTGCTTGTCCCTCTATACATTTGGACCACAGGCCACCTTCACCAGAATATGGGGATAATAGGCACAGAGGAATTGTTTAACCCATACTGACAGATAAACCCTACTGGGCTGGCCAGACCTCCCGTTATGGATTTCACAAGGATCCCATCAATGGCCCAGAATTGATCAGCGTCCCCCTTCCCTCTGCTGTTCCCCCTACATTCAGAGAAGAACCACACCGGAACGAATAACGGCTAAAATAAACAGATGGCCGCGGTGTGTTAgcgatcacctgctgggtgtgaACGATCCAACATGTAGAATCGTGGGGAAATAATAGCCGATATTCTGATATTCGTCCTGGTGTGTATCCTCTGAAGACTACCATCTTCACCAAAAGATGTGGACTACAGTCAACCTGAAGCATTACATCTGGACTACTGCCCACTCTATTCCATTTGGATTACTACTGCTCTACAGCATTAACCCTGCATCTCCTGTTTAACTGGACTACAGGCCGGTCTCATCATTACTGTAGGACCACCCTGTCGAATCTACTCGCCCATCTTCACTGAGTCATTGACTCATCACAATCCCCTCCTATAGTAGCTAATACTTAGTAGTACCCACACAGCCACCCACGTTCATGTGCCATTCTCTTACCCATGAATCATACCCAAGAACAGGACTTATATTGTACTGCAATAATGTATAAGACAAACCGGTGAACTATGCAGTGTCATTTCTGTCTAATACAAGGCACCGTTTGAGCTATAATTGTGCTATAGGGATATCATATTTGTAAAGATAGTGGCGCACTAAGATCATTGCTTCAGTGGAGGTAGCTATCACTCATGTTTGTAAAAAAAGACTGGTAAGGATCTCCTCTTTTGCTGTTTGCACTTTAAGTCCCCTCTCTGTTGATGTCTACAGTGCATTAGATGGCTAGAGTATGTGTTGTAGTTCCTCTTGCATTACGTgtaggtgtctgttagtgtgtaagtgtttgtttctttgtgtgtgtgcgtatgtgtgtgagtgtatatgggtgtttgtgtgtgacctTACCCTCCACCTTAAAGCCATCCCAGCTGACACCCAATAACCATTCTGAATGACCACGTCATGGGCTCAAGGGACCACTAAGGCTTGTGTATAATATCTGTTAATGTGTAAAAGATGAACCATTTCAAATAAAAGAGTCTTACTTTGTTAA
>XM_036973300.1
agagagagagagagagcgagagagagacagagagagagagagagagagagagacgtgtgtggagagaaagagagagagagcagtgtgtagagagaaagagagtgagagacgaAGGAGGGGGACACAGACCACTGTTAAAGGAGGGTGCCGGCTGTGAACGGTAACGGCTGCAGACAAGACacgcagacagagagacggactccagcgctgcacacacacacacaaacacgcgtaAAGAGTGTGTGAGACATGCCCAGGCTGCTgcccatggacacacacacacacaacctggcaGGGCATCCGAGAGGACATACAGACCCCTATGTCTAAGGAGTCATGGAGAGCAGCATGTTTTTCGGTAATGCATGTCAAAATGGCCTCCTGCCGACGCTGATACGTCCTGCTCTGCCCACCATCCAGCAGTCTCTGGGCATGAAGCAGTTCCAGCTCCCGTTTCCCCTGGATACGGCCTCAGCAGTCAGCCTTTTCCCCGGCTTCGGCACGatggaCCCAGTTCAGAAGGCTGTTATGCATCACACGTTTGGAGTTCCTCCCTTGACCAAGAGAAGACACGTCTCGTGCAGCGTGTGCCAACTGAGATTCAACTCACAGAGCCAAGCCTTAGCCCACTACAAAGGAACAAAACACGCCAAGAAGCTGAAATCTCTGGACGCTACCAAATGTAAGCTCAGAGGTTCAGTGGTCACCAAGGAAACCACCAACCATGAAACCCCTAAGAGCATCAACCCTCCAGCAATGTGCTACGGCACTGACAGGAAAGATGGCTTTCCAGGTGCATCGCCGCTACCACTATCTCCTGTGCTCACACTGGCTCCAACCCTGGGATCCCTGGCATCATCCCTGGCACCCATGACATCAATGTTACCACCCCTGGCACCTACGCTGGCATCGAGTCCCAACTCATCCACAGGGACAGAGACTACCTCAGCTACAGGATGGGACGACCGGGCCTCGCCCAAACCCAGCTCACCTATAGAACCAGACATGGAGGAGGAGCAAGAGGCTGAGACAGACCCGGAGACGGAGGAAGAGAAAGCCAGGCGTCTGCTCTACTGCTCGCTCTGCAAGATGGCCGTCAACTCGGCATCCCAACTGGAGGCTCATAACAGCGGTACGAAGCACAAGACCATGCTAGAGGCCAGGAGTGGTGTGGGCTCCATCAAGTCCTTCCCCCGGCCAGGGGTCAAGAGCAAGCTAGCTCCGCCCACCAAGGCAGCCACGGGCCTGCagaacaaaacatttcactgtgagaTCTGCGATGTGCACGTCAACTCCGAGACACAGCTAAAACAGCACATCAGCAGCAGACGTCACAAAGACCGAGCGGCAGGCAAACCGGCCAAACCCAAATACAGTCCCTACAGTAAACTCCCGAAAGGCCAGGCCACACAACCAGTGAAGCTGACAGTGGGGAAGGAGTTGTGCCAACCTCAGATAACCCAGATAATGCCCGCTCACCTGGCAGCATTGgcatcagcagcagcagctatGGGCTCGGCCTTCCCCGGCCTCCGCTCCACCCACGCTCCCTCCCGTGGCCCCACCCTTTTTCAGACACAGACCCTCCCTGCTGCCCTGCTCCGCCCCGCCCCCGGGCCTGTCAGGACCTCCCATACACAGTTACTGTTTGCCCCCTACTGACTCACAACCCTATAGACTCTATGGACTTCCCATGACGGACATGCCACGGAAGTTATTATGAACCAGAGTCCCCTTCCCTCTGCTTGTCCCTCTATACATTTGGACCACAGGCCACCTTCACCAGAATATGGGGATAATAGGCACAGAGGAATTGTTTAACCCATACTGACAGATAAACCCTACTGGGCTGGCCAGACCTCCCGTTATGGATTTCACAAGGATCCCATCAATGGCCCAGAATTGATCAGCGTCCCCCTTCCCTCTGCTGTTCCCCCTACATTCAGAGAAGAACCACACCGGAACGAATAACGGCTAAAATAAACAGATGGCCGCGGTGTGTTAgcgatcacctgctgggtgtgaACGATCCAACATGTAGAATCGTGGGGAAATAATAGCCGATATTCTGATATTCGTCCTGGTGTGTATCCTCTGAAGACTACCATCTTCACCAAAAGATGTGGACTACAGTCAACCTGAAGCATTACATCTGGACTACTGCCCACTCTATTCCATTTGGATTACTACTGCTCTACAGCATTAACCCTGCATCTCCTGTTTAACTGGACTACAGGCCGGTCTCATCATTACTGTAGGACCACCCTGTCGAATCTACTCGCCCATCTTCACTGAGTCATTGACTCATCACAATCCCCTCCTATAGTAGCTAATACTTAGTAGTACCCACACAGCCACCCACGTTCATGTGCCATTCTCTTACCCATGAATCATACCCAAGAACAGGACTTATATTGTACTGCAATAATGTATAAGACAAACCGGTGAACTATGCAGTGTCATTTCTGTCTAATACAAGGCACCGTTTGAGCTATAATTGTGCTATAGGGATATCATATTTGTAAAGATAGTGGCGCACTAAGATCATTGCTTCAGTGGAGGTAGCTATCACTCATGTTTGTAAAAAAAGACTGGTAAGGATCTCCTCTTTTGCTGTTTGCACTTTAAGTCCCCTCTCTGTTGATGTCTACAGTGCATTAGATGGCTAGAGTATGTGTTGTAGTTCCTCTTGCATTACGTgtaggtgtctgttagtgtgtaagtgtttgtttctttgtgtgtgtgcgtatgtgtgtgagtgtatatgggtgtttgtgtgtgacctTACCCTCCACCTTAAAGCCATCCCAGCTGACACCCAATAACCATTCTGAATGACCACGTCATGGGCTCAAGGGACCACTAAGGCTTGTGTATAATATCTGTTAATGTGTAAAAGATGAACCATTTCAAATAAAAGAGTCTTACTTTGTTAA

Function

NR:

description
PREDICTED: zinc finger protein 385D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036973309.1 False 2919 mRNA 0.50 8 25596704 25635892
XM_036973300.1 True 2936 mRNA 0.51 8 25596704 25643498

Neighbor

gene id symbol gene type direction distance location
LOC110503974 NA coding downstream 7280 25583941 ~ 25589424 (-)
LOC110515528 LOC106582056 coding downstream 20897 25568039 ~ 25575807 (-)
LOC110515443 LOC106605270 coding downstream 74875 25465851 ~ 25521829 (-)
LOC110515384 LOC106582009 coding downstream 360168 25171287 ~ 25236536 (-)
notchl LOC106581966 coding downstream 471262 25119183 ~ 25125442 (-)
LOC110515676 LOC106582133 coding upstream 156739 25800237 ~ 25810648 (-)
LOC110515750 LOC106582146 coding upstream 179314 25822812 ~ 25825108 (-)
LOC110515765 LOC106582155 coding upstream 194139 25837637 ~ 25854424 (-)
ica1 LOC106582178 coding upstream 240320 25883818 ~ 25895863 (-)
LOC110515870 LOC106584533 coding upstream 268209 25911707 ~ 25918481 (-)
G239138 NA non-coding downstream 5154 25591351 ~ 25591550 (-)
G239133 NA non-coding downstream 18009 25577220 ~ 25578695 (-)
G239050 NA non-coding downstream 55300 25540874 ~ 25541404 (-)
G238922 NA non-coding downstream 132157 25464226 ~ 25464547 (-)
G238816 NA non-coding downstream 204074 25392404 ~ 25392630 (-)
G239402 NA non-coding upstream 167707 25811205 ~ 25813187 (-)
G239480 pngf non-coding upstream 188514 25832012 ~ 25834240 (-)
G239502 NA non-coding upstream 231313 25874811 ~ 25875963 (-)
G239504 NA non-coding upstream 255320 25898818 ~ 25899130 (-)
LOC110515208 LOC106581894 other downstream 630496 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 826381 24767049 ~ 24799511 (-)
G237832 NA other downstream 1075160 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 1412740 24180556 ~ 24183964 (-)
G240409 NA other upstream 925603 26569101 ~ 26569522 (-)
G240464 NA other upstream 1031094 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1427557 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1468684 27111084 ~ 27127488 (-)

Expression


Co-expression Network