LOC110515597 (LOC105021876)


Basic Information

Item Value
gene id LOC110515597
gene name LOC105021876
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25717287 ~ 25747404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594439.2
ACGAGCTGCGCGCGCAATATGAGAGCGCGCGTGGAGGCGGTCCGGCTTCTTCAGTTTTCTGTAATCGCTTTTCGGTTGCTACCTTCAGTTAAATAGCAAGGACACGAGTGCGAGCAGACGGCCGTGTGTGTGGATATACTTTTCACCTGGGATTGTAATAATAAGTACAGCATCGACAGTCAGCTGCCAGGGCCAGGATGTCCAGTGAGGTGCAGAGACCGGACGACAGCCCCAGCACCAGTGGGGGGAGCTCGGATATCGAACAAAGAGAATCATCAGTACCCCCAGAACAGGAGCGGGAACAAGCACAGCCCAAAAAGAAGGAGACCAAGATCTCCAGTAAAACAGCTGCCAAACTCTCAACCAGTGCCAAGAGGATTCAGAAAGAACTTGCAGAAATTACACTCGACCCACCTCCAAACTGCAGCGCCGGCCCCAAAGGAGACAACATCTATGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTGGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACGTTTCGGACAAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCGGACCCTCTGGTGGGGAGCATTGCCACACAATACCTGACCAACAGAACGGAACATGACAGAATAGCCAAGCAGTGGACGAAGAGATATGCCACATAGATCCCCGTCTGACTTttccactgccccccccccccccccccccactgtacctctctacctctccccccagcctttcaaagcacactCACTAAGTGCAACGGTATACCTGTAATCCTCCCCCCTAAACTTTGTATCTACCTTTTATTTGTAAAGAACTGTCCTTTGTTCCTTGTTGACTTGAAagcttcttctttttttataCAAAGAGTAGATTGggattttattttccaatatcTGAATGTTGGAATTGTATTGAAAAAATACTATTATTCTGATGAGTATTGTCCCTCAACTATACAGTAGGTATCTTTGTTTTCATAGTGGCTCCAGGAACAAAATGCAGATTATATACTCTTTTTACTGTACCCTaggttattttgtgttttttaatTTCCTATTCCAGTCATCAATGTTATCTGCATGGAACAGGAGGAAGATTTGCATCAAATGACATGTCATGCTCTTCTGTGCTCTTTGGTTTtgtttgtactgtatgtattttttcAAACTCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACTGGCTACTCTGGCATGGCAGGGTGGTTTGTTATGACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGGCTTGTGACTATA
>XM_036973334.1
GGGTGTGGGACGTGCCTCCCTTTGTGCCTGAGCAGCTCAACGCTTTTTGTGGACACTTGAGAAACGTTGGATTCACACATTTCCAAGCCGTTCATTTGGCCCTCGCGTCGACTGGCCTTGACGAGCCCTTGATGCCTTGTCGAAGAATCTCCTAAACGGCCAGGATGTCCAGTGAGGTGCAGAGACCGGACGACAGCCCCAGCACCAGTGGGGGGAGCTCGGATATCGAACAAAGAGAATCATCAGTACCCCCAGAACAGGAGCGGGAACAAGCACAGCCCAAAAAGAAGGAGACCAAGATCTCCAGTAAAACAGCTGCCAAACTCTCAACCAGTGCCAAGAGGATTCAGAAAGAACTTGCAGAAATTACACTCGACCCACCTCCAAACTGCAGCGCCGGCCCCAAAGGAGACAACATCTATGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTGGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACGTTTCGGACAAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCGGACCCTCTGGTGGGGAGCATTGCCACACAATACCTGACCAACAGAACGGAACATGACAGAATAGCCAAGCAGTGGACGAAGAGATATGCCACATAGATCCCCGTCTGACTTttccactgccccccccccccccccccccactgtacctctctacctctccccccagcctttcaaagcacactCACTAAGTGCAACGGTATACCTGTAATCCTCCCCCCTAAACTTTGTATCTACCTTTTATTTGTAAAGAACTGTCCTTTGTTCCTTGTTGACTTGAAagcttcttctttttttataCAAAGAGTAGATTGggattttattttccaatatcTGAATGTTGGAATTGTATTGAAAAAATACTATTATTCTGATGAGTATTGTCCCTCAACTATACAGTAGGTATCTTTGTTTTCATAGTGGCTCCAGGAACAAAATGCAGATTATATACTCTTTTTACTGTACCCTaggttattttgtgttttttaatTTCCTATTCCAGTCATCAATGTTATCTGCATGGAACAGGAGGAAGATTTGCATCAAATGACATGTCATGCTCTTCTGTGCTCTTTGGTTTtgtttgtactgtatgtattttttcAAACTCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACTGGCTACTCTGGCATGGCAGGGTGGTTTGTTATGACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGGCTTGTGACTATA
>XM_036973321.1
TGTGTGGTTAGAGAGACGAGCCAGCAACACGAGGGTTGCCAGTTTGTGTCTGTGGTCCAGCgggaagtgagctggcaaccaGAGTGTTGCTGGTATAaaatcctagatgccattgcctgctgttgtgcccttgagGGCCAGGATGTCCAGTGAGGTGCAGAGACCGGACGACAGCCCCAGCACCAGTGGGGGGAGCTCGGATATCGAACAAAGAGAATCATCAGTACCCCCAGAACAGGAGCGGGAACAAGCACAGCCCAAAAAGAAGGAGACCAAGATCTCCAGTAAAACAGCTGCCAAACTCTCAACCAGTGCCAAGAGGATTCAGAAAGAACTTGCAGAAATTACACTCGACCCACCTCCAAACTGCAGCGCCGGCCCCAAAGGAGACAACATCTATGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTGGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACGTTTCGGACAAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCGGACCCTCTGGTGGGGAGCATTGCCACACAATACCTGACCAACAGAACGGAACATGACAGAATAGCCAAGCAGTGGACGAAGAGATATGCCACATAGATCCCCGTCTGACTTttccactgccccccccccccccccccccactgtacctctctacctctccccccagcctttcaaagcacactCACTAAGTGCAACGGTATACCTGTAATCCTCCCCCCTAAACTTTGTATCTACCTTTTATTTGTAAAGAACTGTCCTTTGTTCCTTGTTGACTTGAAagcttcttctttttttataCAAAGAGTAGATTGggattttattttccaatatcTGAATGTTGGAATTGTATTGAAAAAATACTATTATTCTGATGAGTATTGTCCCTCAACTATACAGTAGGTATCTTTGTTTTCATAGTGGCTCCAGGAACAAAATGCAGATTATATACTCTTTTTACTGTACCCTaggttattttgtgttttttaatTTCCTATTCCAGTCATCAATGTTATCTGCATGGAACAGGAGGAAGATTTGCATCAAATGACATGTCATGCTCTTCTGTGCTCTTTGGTTTtgtttgtactgtatgtattttttcAAACTCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACTGGCTACTCTGGCATGGCAGGGTGGTTTGTTATGACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGGCTTGTGACTATA
>TU273356
gcacactCACTAAGTGCAACGGTATACCTGTAATCCTCCCCCCTAAACTTTGTATCTACCTTTTATTTGTAAAGAACTGTCCTTTGTTCCTTGTTGACTTGAAagcttcttctttttttataCAAAGAGTAGATTGggattttattttccaatatcTGAATGTTGGAATTGTATTGAAAAAATACTATTATTCTGATGAGTATTGTCCCTCAACTATACAGTAGGTATCTTTGTTTTCATAGTGGCTCCAGGAACAAAATGCAGATTATATACTCTTTTTACTGTACCCTaggttattttgtgttttttaatTTCCTATTCCAGTCATCAATGTTATCTGCATGGAACAGGAGGAAGATTTGCATCAAATGACATGTCATGCTCTTCTGTGCTCTTTGGTTTtgtttgtactgtatgtattttttcAAACTCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACTGGCTACTCTGGCATGGCAGGGTGGTTTGTTATGACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGGCTTGTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594439.2 False 1463 mRNA 0.47 6 25717287 25747404
XM_036973334.1 False 1430 mRNA 0.47 6 25717564 25747404
XM_036973321.1 False 1408 mRNA 0.47 6 25718940 25747404
TU273356 True 572 lncRNA 0.34 1 25746827 25747398

Neighbor

gene id symbol gene type direction distance location
LOC110515550 LOC106582071 coding upstream 132351 25577166 ~ 25584936 (+)
si:dkey-82o10.4 LOC106582066 coding upstream 150880 25563330 ~ 25566407 (+)
LOC110515430 LOC106582018 coding upstream 381464 25275403 ~ 25335823 (+)
LOC110515419 LOC106582023 coding upstream 446859 25262873 ~ 25270428 (+)
vmo1b vmo1 coding upstream 551922 25162240 ~ 25165365 (+)
LOC110515611 LOC106582094 coding downstream 382 25747786 ~ 25757241 (+)
LOC110515629 LOC106582110 coding downstream 12810 25760214 ~ 25771793 (+)
LOC110515656 LOC106582123 coding downstream 34871 25782275 ~ 25800223 (+)
LOC110515724 LOC106582140 coding downstream 63623 25811027 ~ 25823121 (+)
si:dkey-256h2.1 pngf coding downstream 77777 25825181 ~ 25837840 (+)
G239217 NA non-coding upstream 7583 25709421 ~ 25709704 (+)
G239196 NA non-coding upstream 32660 25684411 ~ 25684627 (+)
G239073 NA non-coding upstream 125403 25591619 ~ 25591884 (+)
G239043 NA non-coding upstream 155482 25561588 ~ 25561805 (+)
G239040 NA non-coding upstream 159110 25557940 ~ 25558177 (+)
G239280 LOC106582155 non-coding downstream 92198 25839602 ~ 25840173 (+)
G239295 NA non-coding downstream 140086 25887490 ~ 25887835 (+)
G239296 NA non-coding downstream 144880 25892284 ~ 25894425 (+)
G239321 LOC106582184 non-coding downstream 199391 25946795 ~ 25947982 (+)
G239604 LOC106582196 non-coding downstream 327044 26074448 ~ 26075042 (+)
G239026 NA other upstream 175674 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 518053 25195287 ~ 25199234 (+)
G238050 NA other upstream 941342 24775279 ~ 24775945 (+)
G238047 NA other upstream 950924 24765666 ~ 24766363 (+)
G238034 NA other upstream 966904 24749405 ~ 24750383 (+)
G239697 LOC106582257 other downstream 466238 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 580004 26327408 ~ 26328331 (+)
G240244 NA other downstream 1303782 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 1509184 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 1808768 27556172 ~ 27558532 (+)

Expression


Co-expression Network