LOC110515611 (LOC106582094)


Basic Information

Item Value
gene id LOC110515611
gene name LOC106582094
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25747786 ~ 25757241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594448.2
TACCATGACCTAATATTGAATGATCCCTATGCGCCGATATACTGTCATCATAGTGAGTGCGCGATATGATTCCACTGCACCCGCGGCACTTCCGTTCCACAGAAGGCTATACGCACGAGCTCAGGCAGTGGGGAGATCCAGACACAAAGGAGGTTCCTGCTAATTTCTTGTCCAAACCGGTATGTCGGATGAGGAGTCGCGTGTCAGCACCAGCTCTTCATCTTCTTCCTCCAATCAAAACAAACCGAAGGACACACCTTGCAAGAAACGGGAGAGCAAAGCCAGTATGAGCAAGACCTCCAAGCTGCTATCCACCAGTGCGAAGAGGCATGTTTGTTTCTGCAGGATTCAGAAAGAGCTGGCAGATATCACGCTGGACCCTCCGCCAAACTGCAGCGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTGGACATCGCCTTCACACCCGACTATCCCTTCAAACCACCCAAGGTAACGTTTCGGACAAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCTGATCCCCTGGTTGGAAGCATAGCCACCCAGTACACGACAAACAGAGCCGAGCATGACAGAACAGCCAAACAGTGGACGAAGCGGTACGCCACATAGGCCCATAGAGCACAGCCGTGTGGGGGGGAATTTCTATTTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTTGGTTCCTGATTAAGTTATCTGTGCAGATAtggaaataaagaaaaacaatgaAACTATA
>XM_021594453.2
ACCATGACCTAATATTGAATGATCCCTATGCGCCGATATACTGTCATCATAGTGAGTGCGCGATATGATTCCACTGCACCCGCGGCACTTCCGTTCCACAGAAGGCTATACGCACGAGCTCAGGCAGTGGGGAGATCCAGACACAAAGGAGGTTCCTGCTAATTTCTTGTCCAAACCGGTATGTCGGATGAGGAGTCGCGTGTCAGCACCAGCTCTTCATCTTCTTCCTCCAATCAAAACAAACCGAAGGACACACCTTGCAAGAAACGGGAGAGCAAAGCCAGTATGAGCAAGACCTCCAAGCTGCTATCCACCAGTGCGAAGAGGATTCAGAAAGAGCTGGCAGATATCACGCTGGACCCTCCGCCAAACTGCAGCGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTGGACATCGCCTTCACACCCGACTATCCCTTCAAACCACCCAAGGTAACGTTTCGGACAAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCTGATCCCCTGGTTGGAAGCATAGCCACCCAGTACACGACAAACAGAGCCGAGCATGACAGAACAGCCAAACAGTGGACGAAGCGGTACGCCACATAGGCCCATAGAGCACAGCCGTGTGGGGGGGAATTTCTATTTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTTGGTTCCTGATTAAGTTATCTGTGCAGATAtggaaataaagaaaaacaatgaAACTATA

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 E1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594448.2 False 908 mRNA 0.50 6 25747786 25757241
XM_021594453.2 True 889 mRNA 0.50 6 25747787 25757241

Neighbor

gene id symbol gene type direction distance location
LOC110515597 LOC105021876 coding upstream 382 25717287 ~ 25747404 (+)
LOC110515550 LOC106582071 coding upstream 162850 25577166 ~ 25584936 (+)
si:dkey-82o10.4 LOC106582066 coding upstream 181379 25563330 ~ 25566407 (+)
LOC110515430 LOC106582018 coding upstream 411963 25275403 ~ 25335823 (+)
LOC110515419 LOC106582023 coding upstream 477358 25262873 ~ 25270428 (+)
LOC110515629 LOC106582110 coding downstream 2973 25760214 ~ 25771793 (+)
LOC110515656 LOC106582123 coding downstream 25034 25782275 ~ 25800223 (+)
LOC110515724 LOC106582140 coding downstream 53786 25811027 ~ 25823121 (+)
si:dkey-256h2.1 pngf coding downstream 67940 25825181 ~ 25837840 (+)
LOC110515778 LOC106582151 coding downstream 98114 25855355 ~ 25865532 (+)
G239217 NA non-coding upstream 38082 25709421 ~ 25709704 (+)
G239196 NA non-coding upstream 63159 25684411 ~ 25684627 (+)
G239073 NA non-coding upstream 155902 25591619 ~ 25591884 (+)
G239043 NA non-coding upstream 185981 25561588 ~ 25561805 (+)
G239280 LOC106582155 non-coding downstream 82361 25839602 ~ 25840173 (+)
G239295 NA non-coding downstream 130249 25887490 ~ 25887835 (+)
G239296 NA non-coding downstream 135043 25892284 ~ 25894425 (+)
G239321 LOC106582184 non-coding downstream 189554 25946795 ~ 25947982 (+)
G239604 LOC106582196 non-coding downstream 317207 26074448 ~ 26075042 (+)
G239026 NA other upstream 206173 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 548552 25195287 ~ 25199234 (+)
G238050 NA other upstream 971841 24775279 ~ 24775945 (+)
G238047 NA other upstream 981423 24765666 ~ 24766363 (+)
G238034 NA other upstream 997403 24749405 ~ 24750383 (+)
G239697 LOC106582257 other downstream 456401 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 570167 26327408 ~ 26328331 (+)
G240244 NA other downstream 1293945 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 1499347 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 1798931 27556172 ~ 27558532 (+)

Expression


Co-expression Network