LOC110515724 (LOC106582140)


Basic Information

Item Value
gene id LOC110515724
gene name LOC106582140
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25811027 ~ 25823121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594520.2
GTTTCTGTCAGGTTTCTGttaatagaaaataaataaaatcaaaacAGAGATTCTCTTTAGCAAAAATGTAATATTGTTGTCGCGATAGCATGTGGATAACTCAGGAAATGAACAAACTACCGCGAGATGTTTGGTCCTTAATTTTGGTCCTATTCATAATCGCAGTACGCATTGTATCTGGCGTACTCTCCGTCGTTCAGGTGTGAAATTACGTCGGCCATAGTACGTAGGTATGCGCTAGTGGTAAAGAAGCGGAATGTCGGGTTGTGAATGATCGGTTTCTGAGCGGCAGCGAACGTCAACATTATGGCtCAACAAAAGAATCTGGAGGGGTATGTGGGCTTTGCTAGCCTTCCCAATCAAGTGTACAGAAAATCAGTGAAGAGAGGCTTTGAATTCACCCTGATGGTTGTGGGTGAATCGGGATTGGGCAAGTCCACGTTGATCAATTCTCTGTTCCTAACAGATTTGTACTCGTCAGAATACCCTGGGCCTTCACACAGAGTCAAAAAGACTGTACAGGTGGAGCAATCCAAAGTGTTAGTAAAGGAAGGTGGTGTCCAGCTCCTGCTCACAATAGTCGACACCCCAGGATTCGGCGACGCTGTGGACAATAGCAACTGCTGGCAGCCGGTCATCGACCACATAGACAGCAAGTTTGAGGATTTCCTCAACTGTGAGTCGCGGGTGAACAGACGACTGATGCCCGACAGCAGAGTGCAGTGCTGCCTCTACTTCATCGCCCCCTCGGGACACGGACTGAAGCCTCTGGATATTGAGTTTATGAAACGGTTGCATGAGAAGGTGAACGTTATCCCACTGATCGCAAAAGCAGACACTCTCACCCCAGAGGAGTGCCAACGGTTCAAGAAGCAGATCATGCGGGAAATCCTGGAGCACAAAATCCAGATCTACGAGTTCCCAGAGacggatgatgaggaggagaacaAACTGGTGAAGAAGATCAAGGACCGTCTGCCCCTGGCCGTGGTGGGCAGTAACACCATCATCGAGGTGAATGGGAAGAGGACCAGAGGACGACAGTACCCATGGGGAGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATCCTACGAGACATGCTCATCAGAACCCACATGCAGGACCTGAAGGACGTGACCAATAACGTCCACTATGAGAACTACCGCAGCAGGAAGCTGGCGGCTGTCACCTACAACGGACAGGACAACAACAGGGTCAAGGGTCAACAGTCGACCAAACATGACACAGTTGAAGGCATGAGCCCCCTGGCCCAGATGGAGGAGGAGCGGCGGGAGCACGTGGCCAAGATGAAGAAGATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAGGTCAAGGAGAAGATCCAGAAGCTGAAAGATTCCGAGGCTGAGCTCTCGAGGCGTCATGAGCAGATGAAGAAGAATCTGGAGGCCCAGCACAaggagctggaggagaagagACGCCAGTTTGAGGATGACCGGGCCAACTGGGAGACCAATCAGCGCCTGGAGCAACAGAGACTGGATGCCTCCAGGACTCTCGAAAAGAACAAAAAGAAGGGGAAGATATTTTAGAGACAGTCTGCAGAAACACCAAGTTGTACTTGTTGCCAATGTTGCCAGCTCGGACATCTGTGTGTGGCACCAAACCAACACCAAAGCTCATGTACAGCCCAGCTGGGTCTGCATGTACTGTCACAATGACCGGAAGAGAGCTGCCTGTGGACTTCTCCAAGGAATGTGTTTACCTTCATGAAACTTACTGTCTTAGACAGGCCAAACCCATATATAACTGAATACtgccccccccttccccccaagGTTGCATTGTCTATTTAACAACTGATGTCTACTGTTTAATgcagagcaacaacaaaaaaatgaactGTTATACAATCATGTTTCAGTGGTTTTATTTGTTTACATGCACAAAAGATCTTCAATGATGTGGAAAAGGAAATGGCATTTACAAAATCATTTTTGTTTAGTAAAGTGTAACAGATAAACCTCATACTGAACAGCTCCCCATGCAATGTAGCCTAACACGAAACGACTGTCTCAGTCTCTCAACAGGAGTAATGGGAAATCTGGAGGGTAAAATGCACCTTGGGTTTTGTTATGGCTGAAGCTTTTTCCAAAATGTAACGCTTTCTTCTGTTTTTAGCAAATTTTACTAGTCTTGGACCACCATTAACTtcataaatgttatatttcagttagtttattttttatatataccgAGCCAGCTAAagtaatgttttttgttttttttttgtatggaGAATTTTTCTGAAGCTTTGACCAGTTTCTGAAGAGGATTGACTGTTCAAAATACATTCAGTAGTCCTacaaagagcaaaaataaatgaAAGGAATATTTCTGTAACTCCACGTGTCATCAGATTATGTGGGAAAGGAAAGTCAACACCATATTTTGCTTTGGCTATGTactcatctgtattttttttatttgtattgtaCAAAGTCACTTAATAAACATGTAATAGACTTGTAA
>XM_021594529.2
GTTTCTGTCAGGTTTCTGttaatagaaaataaataaaatcaaaacAGAGATTCTCTTTAGCAAAAATGTAATATTGTTGTCGCGATAGCATGTGGATAACTCAGGAAATGAACAAACTACCGCGAGATGTTTGGTCCTTAATTTTGGTCCTATTCATAATCGCAGTACGCATTGTATCTGGCGTACTCTCCGTCGTTCAGGTGTGAAATTACGTCGGCCATAGTACGTAGGTATGCGCTAGTGGTAAAGAAGCGGAATGTCGGGTTGTGAATGATCGGTTTCTGAGCGGCAGCGAACGTCAACATTATGGCtCAACAAAAGAATCTGGAGGGGTATGTGGGCTTTGCTAGCCTTCCCAATCAAGTGTACAGAAAATCAGTGAAGAGAGGCTTTGAATTCACCCTGATGGTTGTGGGTGAATCGGGATTGGGCAAGTCCACGTTGATCAATTCTCTGTTCCTAACAGATTTGTACTCGTCAGAATACCCTGGGCCTTCACACAGAGTCAAAAAGACTGTACAGGTGGAGCAATCCAAAGTGTTAGTAAAGGAAGGTGGTGTCCAGCTCCTGCTCACAATAGTCGACACCCCAGGATTCGGCGACGCTGTGGACAATAGCAACTGCTGGCAGCCGGTCATCGACCACATAGACAGCAAGTTTGAGGATTTCCTCAACTGTGAGTCGCGGGTGAACAGACGACTGATGCCCGACAGCAGAGTGCAGTGCTGCCTCTACTTCATCGCCCCCTCGGGACACGGACTGAAGCCTCTGGATATTGAGTTTATGAAACGGTTGCATGAGAAGGTGAACGTTATCCCACTGATCGCAAAAGCAGACACTCTCACCCCAGAGGAGTGCCAACGGTTCAAGAAGCAGATCATGCGGGAAATCCTGGAGCACAAAATCCAGATCTACGAGTTCCCAGAGacggatgatgaggaggagaacaAACTGGTGAAGAAGATCAAGGACCGTCTGCCCCTGGCCGTGGTGGGCAGTAACACCATCATCGAGGTGAATGGGAAGAGGACCAGAGGACGACAGTACCCATGGGGAGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATCCTACGAGACATGCTCATCAGAACCCACATGCAGGACCTGAAGGACGTGACCAATAACGTCCACTATGAGAACTACCGCAGCAGGAAGCTGGCGGCTGTCACCTACAACGGACAGGACAACAACAGGGTCAAGGGTCAACAGTCGACCAAGAGCCCCCTGGCCCAGATGGAGGAGGAGCGGCGGGAGCACGTGGCCAAGATGAAGAAGATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAGGTCAAGGAGAAGATCCAGAAGCTGAAAGATTCCGAGGCTGAGCTCTCGAGGCGTCATGAGCAGATGAAGAAGAATCTGGAGGCCCAGCACAaggagctggaggagaagagACGCCAGTTTGAGGATGACCGGGCCAACTGGGAGACCAATCAGCGCCTGGAGCAACAGAGACTGGATGCCTCCAGGACTCTCGAAAAGAACAAAAAGAAGGGGAAGATATTTTAGAGACAGTCTGCAGAAACACCAAGTTGTACTTGTTGCCAATGTTGCCAGCTCGGACATCTGTGTGTGGCACCAAACCAACACCAAAGCTCATGTACAGCCCAGCTGGGTCTGCATGTACTGTCACAATGACCGGAAGAGAGCTGCCTGTGGACTTCTCCAAGGAATGTGTTTACCTTCATGAAACTTACTGTCTTAGACAGGCCAAACCCATATATAACTGAATACtgccccccccttccccccaagGTTGCATTGTCTATTTAACAACTGATGTCTACTGTTTAATgcagagcaacaacaaaaaaatgaactGTTATACAATCATGTTTCAGTGGTTTTATTTGTTTACATGCACAAAAGATCTTCAATGATGTGGAAAAGGAAATGGCATTTACAAAATCATTTTTGTTTAGTAAAGTGTAACAGATAAACCTCATACTGAACAGCTCCCCATGCAATGTAGCCTAACACGAAACGACTGTCTCAGTCTCTCAACAGGAGTAATGGGAAATCTGGAGGGTAAAATGCACCTTGGGTTTTGTTATGGCTGAAGCTTTTTCCAAAATGTAACGCTTTCTTCTGTTTTTAGCAAATTTTACTAGTCTTGGACCACCATTAACTtcataaatgttatatttcagttagtttattttttatatataccgAGCCAGCTAAagtaatgttttttgttttttttttgtatggaGAATTTTTCTGAAGCTTTGACCAGTTTCTGAAGAGGATTGACTGTTCAAAATACATTCAGTAGTCCTacaaagagcaaaaataaatgaAAGGAATATTTCTGTAACTCCACGTGTCATCAGATTATGTGGGAAAGGAAAGTCAACACCATATTTTGCTTTGGCTATGTactcatctgtattttttttatttgtattgtaCAAAGTCACTTAATAAACATGTAATAGACTTGTAA
>XM_021594526.2
GCATTGTATCTGGCGTACTCTCCGTCGTTCAGGTGTGAAATTACGTCGGCCATAGTACGTAGGTATGCGCTAGTGGTAAAGAAGCGGAATGTCGGGTTGTGAATGATCGGTTTCTGAGCGGCAGCGAACGTCAACATTATGGCtAATCTGGAGGGGTATGTGGGCTTTGCTAGCCTTCCCAATCAAGTGTACAGAAAATCAGTGAAGAGAGGCTTTGAATTCACCCTGATGGTTGTGGGTGAATCGGGATTGGGCAAGTCCACGTTGATCAATTCTCTGTTCCTAACAGATTTGTACTCGTCAGAATACCCTGGGCCTTCACACAGAGTCAAAAAGACTGTACAGGTGGAGCAATCCAAAGTGTTAGTAAAGGAAGGTGGTGTCCAGCTCCTGCTCACAATAGTCGACACCCCAGGATTCGGCGACGCTGTGGACAATAGCAACTGCTGGCAGCCGGTCATCGACCACATAGACAGCAAGTTTGAGGATTTCCTCAACTGTGAGTCGCGGGTGAACAGACGACTGATGCCCGACAGCAGAGTGCAGTGCTGCCTCTACTTCATCGCCCCCTCGGGACACGGACTGAAGCCTCTGGATATTGAGTTTATGAAACGGTTGCATGAGAAGGTGAACGTTATCCCACTGATCGCAAAAGCAGACACTCTCACCCCAGAGGAGTGCCAACGGTTCAAGAAGCAGATCATGCGGGAAATCCTGGAGCACAAAATCCAGATCTACGAGTTCCCAGAGacggatgatgaggaggagaacaAACTGGTGAAGAAGATCAAGGACCGTCTGCCCCTGGCCGTGGTGGGCAGTAACACCATCATCGAGGTGAATGGGAAGAGGACCAGAGGACGACAGTACCCATGGGGAGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATCCTACGAGACATGCTCATCAGAACCCACATGCAGGACCTGAAGGACGTGACCAATAACGTCCACTATGAGAACTACCGCAGCAGGAAGCTGGCGGCTGTCACCTACAACGGACAGGACAACAACAGGGTCAAGGGTCAACAGTCGACCAAACATGACACAGTTGAAGGCATGAGCCCCCTGGCCCAGATGGAGGAGGAGCGGCGGGAGCACGTGGCCAAGATGAAGAAGATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAGGTCAAGGAGAAGATCCAGAAGCTGAAAGATTCCGAGGCTGAGCTCTCGAGGCGTCATGAGCAGATGAAGAAGAATCTGGAGGCCCAGCACAaggagctggaggagaagagACGCCAGTTTGAGGATGACCGGGCCAACTGGGAGACCAATCAGCGCCTGGAGCAACAGAGACTGGATGCCTCCAGGACTCTCGAAAAGAACAAAAAGAAGGGGAAGATATTTTAGAGACAGTCTGCAGAAACACCAAGTTGTACTTGTTGCCAATGTTGCCAGCTCGGACATCTGTGTGTGGCACCAAACCAACACCAAAGCTCATGTACAGCCCAGCTGGGTCTGCATGTACTGTCACAATGACCGGAAGAGAGCTGCCTGTGGACTTCTCCAAGGAATGTGTTTACCTTCATGAAACTTACTGTCTTAGACAGGCCAAACCCATATATAACTGAATACtgccccccccttccccccaagGTTGCATTGTCTATTTAACAACTGATGTCTACTGTTTAATgcagagcaacaacaaaaaaatgaactGTTATACAATCATGTTTCAGTGGTTTTATTTGTTTACATGCACAAAAGATCTTCAATGATGTGGAAAAGGAAATGGCATTTACAAAATCATTTTTGTTTAGTAAAGTGTAACAGATAAACCTCATACTGAACAGCTCCCCATGCAATGTAGCCTAACACGAAACGACTGTCTCAGTCTCTCAACAGGAGTAATGGGAAATCTGGAGGGTAAAATGCACCTTGGGTTTTGTTATGGCTGAAGCTTTTTCCAAAATGTAACGCTTTCTTCTGTTTTTAGCAAATTTTACTAGTCTTGGACCACCATTAACTtcataaatgttatatttcagttagtttattttttatatataccgAGCCAGCTAAagtaatgttttttgttttttttttgtatggaGAATTTTTCTGAAGCTTTGACCAGTTTCTGAAGAGGATTGACTGTTCAAAATACATTCAGTAGTCCTacaaagagcaaaaataaatgaAAGGAATATTTCTGTAACTCCACGTGTCATCAGATTATGTGGGAAAGGAAAGTCAACACCATATTTTGCTTTGGCTATGTactcatctgtattttttttatttgtattgtaCAAAGTCACTTAATAAACATGTAATAGACTTGTAA

Function

NR:

description
septin-7-like isoform X2

GO: NA

KEGG:

id description
K16944 SEPT7, CDC3; septin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594520.2 False 2527 mRNA 0.45 15 25811027 25823121
XM_021594529.2 False 2506 mRNA 0.45 14 25811027 25823121
XM_021594526.2 True 2350 mRNA 0.46 15 25811195 25823121

Neighbor

gene id symbol gene type direction distance location
LOC110515656 LOC106582123 coding upstream 10804 25782275 ~ 25800223 (+)
LOC110515629 LOC106582110 coding upstream 39234 25760214 ~ 25771793 (+)
LOC110515611 LOC106582094 coding upstream 53786 25747786 ~ 25757241 (+)
LOC110515597 LOC105021876 coding upstream 63623 25717287 ~ 25747404 (+)
LOC110515550 LOC106582071 coding upstream 226091 25577166 ~ 25584936 (+)
si:dkey-256h2.1 pngf coding downstream 2060 25825181 ~ 25837840 (+)
LOC110515778 LOC106582151 coding downstream 32234 25855355 ~ 25865532 (+)
LOC110515810 LOC106582161 coding downstream 43052 25866173 ~ 25883288 (+)
LOC110515888 LOC106582194 coding downstream 226200 26049321 ~ 26057011 (+)
LOC110515914 LOC106582211 coding downstream 245421 26068542 ~ 26070879 (+)
G239217 NA non-coding upstream 101323 25709421 ~ 25709704 (+)
G239196 NA non-coding upstream 126400 25684411 ~ 25684627 (+)
G239073 NA non-coding upstream 219143 25591619 ~ 25591884 (+)
G239043 NA non-coding upstream 249222 25561588 ~ 25561805 (+)
G239280 LOC106582155 non-coding downstream 16481 25839602 ~ 25840173 (+)
G239295 NA non-coding downstream 64369 25887490 ~ 25887835 (+)
G239296 NA non-coding downstream 69163 25892284 ~ 25894425 (+)
G239321 LOC106582184 non-coding downstream 123674 25946795 ~ 25947982 (+)
G239604 LOC106582196 non-coding downstream 251327 26074448 ~ 26075042 (+)
G239026 NA other upstream 269414 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 611793 25195287 ~ 25199234 (+)
G238050 NA other upstream 1035082 24775279 ~ 24775945 (+)
G238047 NA other upstream 1044664 24765666 ~ 24766363 (+)
G238034 NA other upstream 1060644 24749405 ~ 24750383 (+)
G239697 LOC106582257 other downstream 390521 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 504287 26327408 ~ 26328331 (+)
G240244 NA other downstream 1228065 27051186 ~ 27051954 (+)
LOC110516767 LOC106605158 other downstream 1433467 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 1733051 27556172 ~ 27558532 (+)

Expression


Co-expression Network