LOC110515750 (LOC106582146)


Basic Information

Item Value
gene id LOC110515750
gene name LOC106582146
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25822812 ~ 25825108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594530.2
TTCAAGGATTTCACTGTACATGCAcgctctgtctctttcttgctctctctctctctcacacacacatacctgcttTCTCGCTCACTCTGACACATCGCACTCTTTCTCAGTTGAACAGACTCTCACACATACCTGCTTTCTCGCTCACTCTGACACATCGCACTCTTTCTCAGTTGAACAGAAGCAACAGTGGTTTACCCCTTCAGAAATAAAACACAAAGACAAACCTACTGACTCATAATATGACCTAATTATGTTACAACAAAACGGCTTGACATTGACATCCACTTAAGCTCTGTCTCTGCATAAAAACGCCGGCGCGCCGATTGTAATGTCACGCCAATGGATAGACGCACTTCTCTCTGTTAAAATTTGCTCCATGGGGTATTCCAGCAGGCTGCATCTTTGAACTATTGATATTATAGGTATTCTGTATTTATTCAGGCCATTAGTCTGGTTTTATCAGTGAAGTTACTctcatcaaataaaataaacgCATGAAGAGGAACAACTTTACGCACAGCACACCTGCTAACACAATGAAGATAATTCTACTCATGGTATTTTCCCTCGTTTTGGCAACTGTCCTCagccaaaaaatctattttgacGACAGTTGGAGAGAAGACAATGAAACGAGCAAATGGCCACAATCTGAGCAATACAAAGAAATCCTGAAAAGAATGACTCGAAAACCTGAGTCACGCAAATTCTTTGGTCTTATGGGGAAAAGAGGCTCCGCAAAATCCCAGGTAACAAGAAGAAggcagaaatttgagtCTTTTGTTGGACTGATGGGTAAAAGGAGCTCAGAGGAACAAGGTTCCTTCTAATGGATCTTCAAAGCAGCTACATACAACTTTGAATCAAAAGAATCAAGTGTGAACCAGGATGCACTGaacatgtgtttgcatgattgtTTCAGTCACGCGTGATGTCCAATATTTTGAAAACATTTTGCATCAAATTAAACAGTACTTGCAAAAATTGCTTTAGACAATTAAGGAAGATGCATATTACTGTGGTGTGaaatgtcaaatcttttcaggcAAATAACCTGTTAGTGCTCTGAAAACATTCATATTGTGCATGTAATGTGGCAGAATACTTACATCAAAAGTAAAACCACTAAACTGAGAACCGCTGTATGAAGGTGGAGACATGGTGGAGACAAAGCAGATGAATAAACTACAGAGCAAAATAAGTATCACAATTAAACTGTTTAAATTTCAGTAGGCCTACTGAACGTAGTAATGCAGTATCAACATGCATCTCTTATCAGAATTCATTACATTACAAGTCTATTACATGTTTATTAAGTGACTTTGtacaatacaaataaaaaaaatacagatgagtACATAGCCAAAGCAAAATATGGTGTTGACTTTCCTTTCCCACATAATCTGATGACACGTGGAGTTACAGAAATATTCCTTtcatttatttttgctctttgtAGGACTACTGAATGTATTTTGAACAGTCAATCCTCTTCAGAAACTGGTCAAAGCTTCAGAAAAATTCtccatacaaaaaaaaaacaaaaaacattactTTAGCTGGCTcggtatatataaaaaataaactaactgaaatataa
>TU273578
CGCACTTCTCTCTGTTAAAATTTGCTCCATGGGGTATTCCAGCAGGCTGCATCTTTGAACTATTGATATTATAGGTATTCTGTATTTATTCAGGCCATTAGTCTGGTTTTATCAGTGAAGTTACTctcatcaaataaaataaacgCATGAAGAGGAACAACTTTACGCACAGCACACCTGCTAACACAATGAAGATAATTCTACTCATGGTATTTTCCCTCGTTTTGGCAACTGTCCTCagccaaaaaatctattttgacGACAGTTGGAGAGAAGACAATGAAACGAGCAAATGGCCACAATCTGAGCAATACAAAGAAATCCTGAAAAGAATGACTCGAAAACCTGAGTCACGCAAATTCTTTGGTCTTATGGGGAAAAGAGGCTCCGCAAAATCCCAGGTAACAAGAAGAAggcagaaatttgagtCTTTTGTTGGACTGATGGGTAAAAGGAGCTCAGAGGAACAAGGTTCCTTCTAATGGATCTTCAAAGCAGCTACATACAACTTTGAATCAAAAGAATCAAGTGTGAACCAGGATGCACTGaacatgtgtttgcatgattgtTTCAGTCACGCGTGATGTCCAATATTTTGAAAACATTTTGCATCAAATTAAACAGTACTTGCAAAAATTGCTTTAGACAATTAAGGAAGATGCATATTACTGTGGTGTGaaatgtcaaatcttttcaggcAAATAACCT

Function

NR:

description
protachykinin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594530.2 False 1603 mRNA 0.37 5 25822812 25825108
TU273578 True 708 TUCP 0.40 5 25823356 25824757

Neighbor

gene id symbol gene type direction distance location
LOC110515676 LOC106582133 coding downstream 12164 25800237 ~ 25810648 (-)
LOC110515569 LOC106605268 coding downstream 179314 25596704 ~ 25643498 (-)
LOC110503974 NA coding downstream 233388 25583941 ~ 25589424 (-)
LOC110515528 LOC106582056 coding downstream 247005 25568039 ~ 25575807 (-)
LOC110515443 LOC106605270 coding downstream 300983 25465851 ~ 25521829 (-)
LOC110515765 LOC106582155 coding upstream 12529 25837637 ~ 25854424 (-)
ica1 LOC106582178 coding upstream 58710 25883818 ~ 25895863 (-)
LOC110515870 LOC106584533 coding upstream 86599 25911707 ~ 25918481 (-)
LOC110515882 LOC106582184 coding upstream 93807 25918915 ~ 26024557 (-)
LOC110515898 LOC106582196 coding upstream 245948 26071056 ~ 26094219 (-)
G239402 NA non-coding downstream 9625 25811205 ~ 25813187 (-)
G239138 NA non-coding downstream 231262 25591351 ~ 25591550 (-)
G239133 NA non-coding downstream 244117 25577220 ~ 25578695 (-)
G239050 NA non-coding downstream 281408 25540874 ~ 25541404 (-)
G239480 pngf non-coding upstream 6904 25832012 ~ 25834240 (-)
G239502 NA non-coding upstream 49703 25874811 ~ 25875963 (-)
G239504 NA non-coding upstream 73710 25898818 ~ 25899130 (-)
G239519 NA non-coding upstream 111115 25936223 ~ 25936711 (-)
LOC110515384 LOC106582009 other downstream 586445 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 856604 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1052489 24767049 ~ 24799511 (-)
G237832 NA other downstream 1301268 24521219 ~ 24521544 (-)
G237657 LOC106605316 other downstream 1638848 24180556 ~ 24183964 (-)
G240409 NA other upstream 743993 26569101 ~ 26569522 (-)
G240464 NA other upstream 849484 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 1245947 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 1287074 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 1330460 27154680 ~ 27159987 (-)

Expression


Co-expression Network